diff --git a/.github/workflows/bioccheck.yaml b/.github/workflows/bioccheck.yaml index 0a59282a..dcccb144 100644 --- a/.github/workflows/bioccheck.yaml +++ b/.github/workflows/bioccheck.yaml @@ -159,9 +159,10 @@ jobs: if: >- inputs.deps-installation-method == 'setup-r-dependencies' uses: insightsengineering/setup-r-dependencies@v1 + env: + GITHUB_PAT: ${{ steps.github-token.outputs.token }} with: lookup-refs: ${{ inputs.lookup-refs }} - github-token: ${{ steps.github-token.outputs.token }} repository-path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }} - name: Run BiocCheck ☣️ diff --git a/.github/workflows/build-check-install.yaml b/.github/workflows/build-check-install.yaml index e15b40f5..df85c1d9 100644 --- a/.github/workflows/build-check-install.yaml +++ b/.github/workflows/build-check-install.yaml @@ -437,9 +437,10 @@ jobs: env.deps_installation_method == 'setup-r-dependencies' && inputs.install-deps-from-package-repositories == '' uses: insightsengineering/setup-r-dependencies@v1 + env: + GITHUB_PAT: ${{ steps.github-token.outputs.token }} with: lookup-refs: ${{ inputs.lookup-refs }} - github-token: ${{ steps.github-token.outputs.token }} repository-path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }} skip-desc-branch: ${{ inputs.skip-desc-branch }} skip-desc-dev: ${{ inputs.skip-desc-dev }} diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml index 63952abb..3db00e17 100644 --- a/.github/workflows/pkgdown.yaml +++ b/.github/workflows/pkgdown.yaml @@ -231,9 +231,10 @@ jobs: if: >- inputs.deps-installation-method == 'setup-r-dependencies' uses: insightsengineering/setup-r-dependencies@v1 + env: + GITHUB_PAT: ${{ steps.github-token.outputs.token }} with: lookup-refs: ${{ inputs.lookup-refs }} - github-token: ${{ steps.github-token.outputs.token }} repository-path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }} - name: Install R package 🚧 diff --git a/.github/workflows/revdepcheck.yaml b/.github/workflows/revdepcheck.yaml index 4ac6f1a1..ce163f51 100644 --- a/.github/workflows/revdepcheck.yaml +++ b/.github/workflows/revdepcheck.yaml @@ -92,10 +92,11 @@ jobs: - name: Install dependencies uses: insightsengineering/setup-r-dependencies@v1 + env: + GITHUB_PAT: ${{ steps.github-token.outputs.token }} with: lookup-refs: ${{ inputs.lookup-refs }} skip-desc-branch: true - github-token: ${{ steps.github-token.outputs.token }} - name: revdepcheck 🔄 id: revdepcheck diff --git a/.github/workflows/rhub.yaml b/.github/workflows/rhub.yaml index be38ed51..4a1240d6 100644 --- a/.github/workflows/rhub.yaml +++ b/.github/workflows/rhub.yaml @@ -97,10 +97,11 @@ jobs: job-config: ${{ matrix.config.job-config }} - uses: insightsengineering/setup-r-dependencies@v1 + env: + GITHUB_PAT: ${{ steps.github-token.outputs.token }} with: lookup-refs: ${{ inputs.lookup-refs }} skip-install: true - github-token: ${{ steps.github-token.outputs.token }} restore-description: false install-quarto: "false" @@ -149,10 +150,11 @@ jobs: job-config: ${{ matrix.config.job-config }} - uses: insightsengineering/setup-r-dependencies@v1 + env: + GITHUB_PAT: ${{ steps.github-token.outputs.token }} with: lookup-refs: ${{ inputs.lookup-refs }} skip-install: true - github-token: ${{ steps.github-token.outputs.token }} restore-description: false install-quarto: "false" diff --git a/.github/workflows/roxygen.yaml b/.github/workflows/roxygen.yaml index 56e22f8e..73562c59 100644 --- a/.github/workflows/roxygen.yaml +++ b/.github/workflows/roxygen.yaml @@ -153,9 +153,10 @@ jobs: if: >- env.deps_installation_method == 'setup-r-dependencies' uses: insightsengineering/setup-r-dependencies@v1 + env: + GITHUB_PAT: ${{ steps.github-token.outputs.token }} with: lookup-refs: ${{ inputs.lookup-refs }} - github-token: ${{ steps.github-token.outputs.token }} repository-path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }} - name: Generate man pages 📄 diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml index 24058269..1c89bdf8 100644 --- a/.github/workflows/test-coverage.yaml +++ b/.github/workflows/test-coverage.yaml @@ -244,9 +244,10 @@ jobs: if: >- inputs.deps-installation-method == 'setup-r-dependencies' uses: insightsengineering/setup-r-dependencies@v1 + env: + GITHUB_PAT: ${{ steps.github-token.outputs.token }} with: lookup-refs: ${{ inputs.lookup-refs }} - github-token: ${{ steps.github-token.outputs.token }} repository-path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }} - name: Install R package 🚧 diff --git a/.github/workflows/validation.yaml b/.github/workflows/validation.yaml index f33b21a2..961d4e39 100644 --- a/.github/workflows/validation.yaml +++ b/.github/workflows/validation.yaml @@ -148,9 +148,10 @@ jobs: if: >- inputs.deps-installation-method == 'setup-r-dependencies' uses: insightsengineering/setup-r-dependencies@v1 + env: + GITHUB_PAT: ${{ steps.github-token.outputs.token }} with: lookup-refs: ${{ inputs.lookup-refs }} - github-token: ${{ steps.github-token.outputs.token }} repository-path: ${{ env.package_subdirectory }} - name: Build report 🏗