From b9163cda7872c26ef21b83c3f83b3940b5ca6a46 Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Tue, 23 Apr 2024 11:21:27 +0200
Subject: [PATCH 01/11] Update

---
 .github/workflows/build-check-install.yaml | 2 +-
 .github/workflows/roxygen.yaml             | 2 +-
 .github/workflows/test-coverage.yaml       | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/build-check-install.yaml b/.github/workflows/build-check-install.yaml
index 6a53c524..f15b4e5d 100644
--- a/.github/workflows/build-check-install.yaml
+++ b/.github/workflows/build-check-install.yaml
@@ -198,7 +198,7 @@ jobs:
       matrix:
         config:
           - image: ghcr.io/insightsengineering/rstudio
-            tag: latest
+            tag: '2024.04.05'
     name: ${{ matrix.config.image }}, version ${{ matrix.config.tag }}
     runs-on: ubuntu-latest
     if: >
diff --git a/.github/workflows/roxygen.yaml b/.github/workflows/roxygen.yaml
index 5020d230..35f26faa 100644
--- a/.github/workflows/roxygen.yaml
+++ b/.github/workflows/roxygen.yaml
@@ -59,7 +59,7 @@ jobs:
       !contains(github.event.commits[0].message, '[skip roxygen]')
         && github.event.pull_request.draft == false
     container:
-      image: ghcr.io/insightsengineering/rstudio:latest
+      image: ghcr.io/insightsengineering/rstudio:2024.04.05
 
     steps:
       - name: Setup token 🔑
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index f3aba70e..defd5d10 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -101,7 +101,7 @@ jobs:
       !contains(github.event.commits[0].message, '[skip coverage]')
         && github.event.pull_request.draft == false
     container:
-      image: ghcr.io/insightsengineering/rstudio:latest
+      image: ghcr.io/insightsengineering/rstudio:2024.04.05
     outputs:
       publish-coverage-html-report: ${{ steps.coverage-output.outputs.coverage-upload }}
       current-branch-or-tag: ${{ steps.current-branch-or-tag.outputs.ref-name }}

From 8168124fcd725762d9f8e3397bdc584a71acd759 Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Tue, 23 Apr 2024 11:31:32 +0200
Subject: [PATCH 02/11] Update

---
 .github/workflows/build-check-install.yaml | 8 ++++++++
 .github/workflows/roxygen.yaml             | 8 ++++++++
 .github/workflows/test-coverage.yaml       | 8 ++++++++
 3 files changed, 24 insertions(+)

diff --git a/.github/workflows/build-check-install.yaml b/.github/workflows/build-check-install.yaml
index f15b4e5d..9d654db7 100644
--- a/.github/workflows/build-check-install.yaml
+++ b/.github/workflows/build-check-install.yaml
@@ -359,6 +359,14 @@ jobs:
           update.packages()
         shell: Rscript {0}
 
+      - name: Test
+        shell: bash
+        run: |
+          apt update && apt install -yq tree
+          echo "pwd = $(pwd)"
+          ls -la
+          tree .
+
       - name: Run Staged dependencies 🎦
         if: >-
           env.enable_sd == 'true'
diff --git a/.github/workflows/roxygen.yaml b/.github/workflows/roxygen.yaml
index 35f26faa..97ff3e0b 100644
--- a/.github/workflows/roxygen.yaml
+++ b/.github/workflows/roxygen.yaml
@@ -114,6 +114,14 @@ jobs:
           key: sd-${{ runner.os }}-${{ github.event.repository.name }}
           path: ~/.staged.dependencies
 
+      - name: Test
+        shell: bash
+        run: |
+          apt update && apt install -yq tree
+          echo "pwd = $(pwd)"
+          ls -la
+          tree .
+
       - name: Run Staged dependencies 🎦
         uses: insightsengineering/staged-dependencies-action@v1
         env:
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index defd5d10..acc6289f 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -206,6 +206,14 @@ jobs:
           }
           fi
 
+      - name: Test
+        shell: bash
+        run: |
+          apt update && apt install -yq tree
+          echo "pwd = $(pwd)"
+          ls -la
+          tree .
+
       - name: Restore SD cache 💰
         uses: actions/cache@v4
         with:

From adda2369f032fd38388ae1f18b967ff82fe3a777 Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Tue, 23 Apr 2024 11:36:50 +0200
Subject: [PATCH 03/11] Update

---
 .github/workflows/build-check-install.yaml | 4 ++--
 .github/workflows/roxygen.yaml             | 4 ++--
 .github/workflows/test-coverage.yaml       | 4 ++--
 3 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/build-check-install.yaml b/.github/workflows/build-check-install.yaml
index 9d654db7..596e0a22 100644
--- a/.github/workflows/build-check-install.yaml
+++ b/.github/workflows/build-check-install.yaml
@@ -365,7 +365,7 @@ jobs:
           apt update && apt install -yq tree
           echo "pwd = $(pwd)"
           ls -la
-          tree .
+          tree -a .
 
       - name: Run Staged dependencies 🎦
         if: >-
@@ -375,7 +375,7 @@ jobs:
         env:
           GITHUB_PAT: ${{ steps.github-token.outputs.token }}
         with:
-          path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}
+          path: ${{ github.event.repository.name }}
           enable-check: ${{ inputs.enable-staged-dependencies-check }}
           run-system-dependencies: ${{ inputs.install-system-dependencies }}
           direction: ${{ inputs.sd-direction }}
diff --git a/.github/workflows/roxygen.yaml b/.github/workflows/roxygen.yaml
index 97ff3e0b..d70a4f3c 100644
--- a/.github/workflows/roxygen.yaml
+++ b/.github/workflows/roxygen.yaml
@@ -120,14 +120,14 @@ jobs:
           apt update && apt install -yq tree
           echo "pwd = $(pwd)"
           ls -la
-          tree .
+          tree -a .
 
       - name: Run Staged dependencies 🎦
         uses: insightsengineering/staged-dependencies-action@v1
         env:
           GITHUB_PAT: ${{ steps.github-token.outputs.token }}
         with:
-          path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}
+          path: ${{ github.event.repository.name }}
           enable-check: ${{ inputs.enable-staged-dependencies-check }}
           run-system-dependencies: ${{ inputs.install-system-dependencies }}
           direction: ${{ inputs.sd-direction }}
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index acc6289f..4546e8aa 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -212,7 +212,7 @@ jobs:
           apt update && apt install -yq tree
           echo "pwd = $(pwd)"
           ls -la
-          tree .
+          tree -a .
 
       - name: Restore SD cache 💰
         uses: actions/cache@v4
@@ -225,7 +225,7 @@ jobs:
         env:
           GITHUB_PAT: ${{ secrets.REPO_GITHUB_TOKEN }}
         with:
-          path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}
+          path: ${{ github.event.repository.name }}
           enable-check: ${{ inputs.enable-staged-dependencies-check }}
           run-system-dependencies: ${{ inputs.install-system-dependencies }}
           direction: ${{ inputs.sd-direction }}

From 2a317b1494e93a9e163d85ad028259654890f41b Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Tue, 23 Apr 2024 11:45:43 +0200
Subject: [PATCH 04/11] Update

---
 .github/workflows/build-check-install.yaml | 14 ++++++++++----
 .github/workflows/roxygen.yaml             |  5 +++--
 .github/workflows/test-coverage.yaml       |  3 ++-
 3 files changed, 15 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/build-check-install.yaml b/.github/workflows/build-check-install.yaml
index 596e0a22..34fb8ebe 100644
--- a/.github/workflows/build-check-install.yaml
+++ b/.github/workflows/build-check-install.yaml
@@ -236,8 +236,8 @@ jobs:
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
           path: ${{ github.event.repository.name }}
-          repository: ${{ github.event.pull_request.head.repo.full_name }}
-          fetch-depth: 0
+          # repository: ${{ github.event.pull_request.head.repo.full_name }}
+          # fetch-depth: 0
 
       - name: Checkout repo 🛎
         uses: actions/checkout@v4
@@ -352,9 +352,14 @@ jobs:
           key: sd-${{ runner.os }}-${{ github.event.repository.name }}
           path: ~/.staged.dependencies
 
+      - name: Test
+        shell: bash
+        run: |
+          R -e -q 'packageVersion("git2r")'
+
       - name: Update R packages 🗓️
-        if: >-
-          inputs.update-r-packages == true
+        # if: >-
+        #   inputs.update-r-packages == true
         run: |
           update.packages()
         shell: Rscript {0}
@@ -366,6 +371,7 @@ jobs:
           echo "pwd = $(pwd)"
           ls -la
           tree -a .
+          R -e -q 'packageVersion("git2r")'
 
       - name: Run Staged dependencies 🎦
         if: >-
diff --git a/.github/workflows/roxygen.yaml b/.github/workflows/roxygen.yaml
index d70a4f3c..29bd8c0f 100644
--- a/.github/workflows/roxygen.yaml
+++ b/.github/workflows/roxygen.yaml
@@ -84,8 +84,8 @@ jobs:
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
           path: ${{ github.event.repository.name }}
-          repository: ${{ github.event.pull_request.head.repo.full_name }}
-          token: ${{ steps.github-token.outputs.token }}
+          # repository: ${{ github.event.pull_request.head.repo.full_name }}
+          # token: ${{ steps.github-token.outputs.token }}
 
       - name: Checkout repo 🛎
         uses: actions/checkout@v4
@@ -121,6 +121,7 @@ jobs:
           echo "pwd = $(pwd)"
           ls -la
           tree -a .
+          R -e -q 'packageVersion("git2r")'
 
       - name: Run Staged dependencies 🎦
         uses: insightsengineering/staged-dependencies-action@v1
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index 4546e8aa..8e5577be 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -172,7 +172,7 @@ jobs:
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
           path: ${{ github.event.repository.name }}
-          repository: ${{ github.event.pull_request.head.repo.full_name }}
+          # repository: ${{ github.event.pull_request.head.repo.full_name }}
 
       - name: Checkout repo 🛎
         uses: actions/checkout@v4
@@ -213,6 +213,7 @@ jobs:
           echo "pwd = $(pwd)"
           ls -la
           tree -a .
+          R -e -q 'packageVersion("git2r")'
 
       - name: Restore SD cache 💰
         uses: actions/cache@v4

From 234393d3e4c166301a06cd27dbef150bc5cad45e Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Tue, 23 Apr 2024 11:50:19 +0200
Subject: [PATCH 05/11] Update

---
 .github/workflows/build-check-install.yaml | 4 ++--
 .github/workflows/roxygen.yaml             | 2 +-
 .github/workflows/test-coverage.yaml       | 2 +-
 3 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/build-check-install.yaml b/.github/workflows/build-check-install.yaml
index 34fb8ebe..26707943 100644
--- a/.github/workflows/build-check-install.yaml
+++ b/.github/workflows/build-check-install.yaml
@@ -355,7 +355,7 @@ jobs:
       - name: Test
         shell: bash
         run: |
-          R -e -q 'packageVersion("git2r")'
+          R -q -e 'packageVersion("git2r")'
 
       - name: Update R packages 🗓️
         # if: >-
@@ -371,7 +371,7 @@ jobs:
           echo "pwd = $(pwd)"
           ls -la
           tree -a .
-          R -e -q 'packageVersion("git2r")'
+          R -q -e 'packageVersion("git2r")'
 
       - name: Run Staged dependencies 🎦
         if: >-
diff --git a/.github/workflows/roxygen.yaml b/.github/workflows/roxygen.yaml
index 29bd8c0f..3d440cc8 100644
--- a/.github/workflows/roxygen.yaml
+++ b/.github/workflows/roxygen.yaml
@@ -121,7 +121,7 @@ jobs:
           echo "pwd = $(pwd)"
           ls -la
           tree -a .
-          R -e -q 'packageVersion("git2r")'
+          R -q -e 'packageVersion("git2r")'
 
       - name: Run Staged dependencies 🎦
         uses: insightsengineering/staged-dependencies-action@v1
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index 8e5577be..889fa824 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -213,7 +213,7 @@ jobs:
           echo "pwd = $(pwd)"
           ls -la
           tree -a .
-          R -e -q 'packageVersion("git2r")'
+          R -q -e 'packageVersion("git2r")'
 
       - name: Restore SD cache 💰
         uses: actions/cache@v4

From 29fbc0ffe2140a52adc45d23504700eb22006456 Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Tue, 23 Apr 2024 12:01:25 +0200
Subject: [PATCH 06/11] Update

---
 .github/workflows/build-check-install.yaml | 10 +++-------
 .github/workflows/roxygen.yaml             |  1 +
 .github/workflows/test-coverage.yaml       |  1 +
 3 files changed, 5 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/build-check-install.yaml b/.github/workflows/build-check-install.yaml
index 26707943..6840f51a 100644
--- a/.github/workflows/build-check-install.yaml
+++ b/.github/workflows/build-check-install.yaml
@@ -352,14 +352,9 @@ jobs:
           key: sd-${{ runner.os }}-${{ github.event.repository.name }}
           path: ~/.staged.dependencies
 
-      - name: Test
-        shell: bash
-        run: |
-          R -q -e 'packageVersion("git2r")'
-
       - name: Update R packages 🗓️
-        # if: >-
-        #   inputs.update-r-packages == true
+        if: >-
+          inputs.update-r-packages == true
         run: |
           update.packages()
         shell: Rscript {0}
@@ -372,6 +367,7 @@ jobs:
           ls -la
           tree -a .
           R -q -e 'packageVersion("git2r")'
+          chmod -R 777 ${{ github.event.repository.name }}
 
       - name: Run Staged dependencies 🎦
         if: >-
diff --git a/.github/workflows/roxygen.yaml b/.github/workflows/roxygen.yaml
index 3d440cc8..a66f6239 100644
--- a/.github/workflows/roxygen.yaml
+++ b/.github/workflows/roxygen.yaml
@@ -122,6 +122,7 @@ jobs:
           ls -la
           tree -a .
           R -q -e 'packageVersion("git2r")'
+          chmod -R 777 ${{ github.event.repository.name }}
 
       - name: Run Staged dependencies 🎦
         uses: insightsengineering/staged-dependencies-action@v1
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index 889fa824..86004304 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -214,6 +214,7 @@ jobs:
           ls -la
           tree -a .
           R -q -e 'packageVersion("git2r")'
+          chmod -R 777 ${{ github.event.repository.name }}
 
       - name: Restore SD cache 💰
         uses: actions/cache@v4

From 4d752249e7b8005e90afd0d34e6a7e2284dcc293 Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Tue, 23 Apr 2024 12:16:25 +0200
Subject: [PATCH 07/11] Update

---
 .github/workflows/build-check-install.yaml | 6 ++++--
 .github/workflows/roxygen.yaml             | 6 ++++--
 .github/workflows/test-coverage.yaml       | 6 ++++--
 3 files changed, 12 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/build-check-install.yaml b/.github/workflows/build-check-install.yaml
index 6840f51a..0270caf5 100644
--- a/.github/workflows/build-check-install.yaml
+++ b/.github/workflows/build-check-install.yaml
@@ -362,12 +362,14 @@ jobs:
       - name: Test
         shell: bash
         run: |
-          apt update && apt install -yq tree
+          # apt update && apt install -yq tree
           echo "pwd = $(pwd)"
           ls -la
-          tree -a .
+          # tree -a .
           R -q -e 'packageVersion("git2r")'
           chmod -R 777 ${{ github.event.repository.name }}
+          ls -la
+          ls -la ${{ github.event.repository.name }}
 
       - name: Run Staged dependencies 🎦
         if: >-
diff --git a/.github/workflows/roxygen.yaml b/.github/workflows/roxygen.yaml
index a66f6239..337312c0 100644
--- a/.github/workflows/roxygen.yaml
+++ b/.github/workflows/roxygen.yaml
@@ -117,12 +117,14 @@ jobs:
       - name: Test
         shell: bash
         run: |
-          apt update && apt install -yq tree
+          # apt update && apt install -yq tree
           echo "pwd = $(pwd)"
           ls -la
-          tree -a .
+          # tree -a .
           R -q -e 'packageVersion("git2r")'
           chmod -R 777 ${{ github.event.repository.name }}
+          ls -la
+          ls -la ${{ github.event.repository.name }}
 
       - name: Run Staged dependencies 🎦
         uses: insightsengineering/staged-dependencies-action@v1
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index 86004304..10ad4f37 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -209,12 +209,14 @@ jobs:
       - name: Test
         shell: bash
         run: |
-          apt update && apt install -yq tree
+          # apt update && apt install -yq tree
           echo "pwd = $(pwd)"
           ls -la
-          tree -a .
+          # tree -a .
           R -q -e 'packageVersion("git2r")'
           chmod -R 777 ${{ github.event.repository.name }}
+          ls -la
+          ls -la ${{ github.event.repository.name }}
 
       - name: Restore SD cache 💰
         uses: actions/cache@v4

From 4e55e729103c9d2c9a2e5927146d856e3fd0b365 Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Tue, 23 Apr 2024 12:24:46 +0200
Subject: [PATCH 08/11] Update

---
 .github/workflows/build-check-install.yaml | 28 +++++++++++-----------
 .github/workflows/roxygen.yaml             | 28 +++++++++++-----------
 .github/workflows/test-coverage.yaml       | 26 ++++++++++----------
 3 files changed, 41 insertions(+), 41 deletions(-)

diff --git a/.github/workflows/build-check-install.yaml b/.github/workflows/build-check-install.yaml
index 0270caf5..3848c587 100644
--- a/.github/workflows/build-check-install.yaml
+++ b/.github/workflows/build-check-install.yaml
@@ -231,13 +231,13 @@ jobs:
         uses: tj-actions/branch-names@v7
 
       - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name == 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
           path: ${{ github.event.repository.name }}
-          # repository: ${{ github.event.pull_request.head.repo.full_name }}
-          # fetch-depth: 0
+          repository: ${{ github.event.pull_request.head.repo.full_name }}
+          fetch-depth: 0
 
       - name: Checkout repo 🛎
         uses: actions/checkout@v4
@@ -359,17 +359,17 @@ jobs:
           update.packages()
         shell: Rscript {0}
 
-      - name: Test
-        shell: bash
-        run: |
-          # apt update && apt install -yq tree
-          echo "pwd = $(pwd)"
-          ls -la
-          # tree -a .
-          R -q -e 'packageVersion("git2r")'
-          chmod -R 777 ${{ github.event.repository.name }}
-          ls -la
-          ls -la ${{ github.event.repository.name }}
+      # - name: Test
+      #   shell: bash
+      #   run: |
+      #     # apt update && apt install -yq tree
+      #     echo "pwd = $(pwd)"
+      #     ls -la
+      #     # tree -a .
+      #     R -q -e 'packageVersion("git2r")'
+      #     chmod -R 777 ${{ github.event.repository.name }}
+      #     ls -la
+      #     ls -la ${{ github.event.repository.name }}
 
       - name: Run Staged dependencies 🎦
         if: >-
diff --git a/.github/workflows/roxygen.yaml b/.github/workflows/roxygen.yaml
index 337312c0..48fa1a48 100644
--- a/.github/workflows/roxygen.yaml
+++ b/.github/workflows/roxygen.yaml
@@ -79,13 +79,13 @@ jobs:
         uses: tj-actions/branch-names@v7
 
       - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name == 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
           path: ${{ github.event.repository.name }}
-          # repository: ${{ github.event.pull_request.head.repo.full_name }}
-          # token: ${{ steps.github-token.outputs.token }}
+          repository: ${{ github.event.pull_request.head.repo.full_name }}
+          token: ${{ steps.github-token.outputs.token }}
 
       - name: Checkout repo 🛎
         uses: actions/checkout@v4
@@ -114,17 +114,17 @@ jobs:
           key: sd-${{ runner.os }}-${{ github.event.repository.name }}
           path: ~/.staged.dependencies
 
-      - name: Test
-        shell: bash
-        run: |
-          # apt update && apt install -yq tree
-          echo "pwd = $(pwd)"
-          ls -la
-          # tree -a .
-          R -q -e 'packageVersion("git2r")'
-          chmod -R 777 ${{ github.event.repository.name }}
-          ls -la
-          ls -la ${{ github.event.repository.name }}
+      # - name: Test
+      #   shell: bash
+      #   run: |
+      #     # apt update && apt install -yq tree
+      #     echo "pwd = $(pwd)"
+      #     ls -la
+      #     # tree -a .
+      #     R -q -e 'packageVersion("git2r")'
+      #     chmod -R 777 ${{ github.event.repository.name }}
+      #     ls -la
+      #     ls -la ${{ github.event.repository.name }}
 
       - name: Run Staged dependencies 🎦
         uses: insightsengineering/staged-dependencies-action@v1
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index 10ad4f37..e8171896 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -167,12 +167,12 @@ jobs:
         shell: bash
 
       - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name == 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
           path: ${{ github.event.repository.name }}
-          # repository: ${{ github.event.pull_request.head.repo.full_name }}
+          repository: ${{ github.event.pull_request.head.repo.full_name }}
 
       - name: Checkout repo 🛎
         uses: actions/checkout@v4
@@ -206,17 +206,17 @@ jobs:
           }
           fi
 
-      - name: Test
-        shell: bash
-        run: |
-          # apt update && apt install -yq tree
-          echo "pwd = $(pwd)"
-          ls -la
-          # tree -a .
-          R -q -e 'packageVersion("git2r")'
-          chmod -R 777 ${{ github.event.repository.name }}
-          ls -la
-          ls -la ${{ github.event.repository.name }}
+      # - name: Test
+      #   shell: bash
+      #   run: |
+      #     # apt update && apt install -yq tree
+      #     echo "pwd = $(pwd)"
+      #     ls -la
+      #     # tree -a .
+      #     R -q -e 'packageVersion("git2r")'
+      #     chmod -R 777 ${{ github.event.repository.name }}
+      #     ls -la
+      #     ls -la ${{ github.event.repository.name }}
 
       - name: Restore SD cache 💰
         uses: actions/cache@v4

From e47e4dbf2613d3adf3cea82ca60e3afd905fe98a Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Tue, 23 Apr 2024 12:34:41 +0200
Subject: [PATCH 09/11] Update

---
 .github/workflows/build-check-install.yaml | 4 ++--
 .github/workflows/roxygen.yaml             | 4 ++--
 .github/workflows/test-coverage.yaml       | 4 ++--
 3 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/build-check-install.yaml b/.github/workflows/build-check-install.yaml
index 3848c587..59a3d437 100644
--- a/.github/workflows/build-check-install.yaml
+++ b/.github/workflows/build-check-install.yaml
@@ -198,7 +198,7 @@ jobs:
       matrix:
         config:
           - image: ghcr.io/insightsengineering/rstudio
-            tag: '2024.04.05'
+            tag: latest
     name: ${{ matrix.config.image }}, version ${{ matrix.config.tag }}
     runs-on: ubuntu-latest
     if: >
@@ -379,7 +379,7 @@ jobs:
         env:
           GITHUB_PAT: ${{ steps.github-token.outputs.token }}
         with:
-          path: ${{ github.event.repository.name }}
+          path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}
           enable-check: ${{ inputs.enable-staged-dependencies-check }}
           run-system-dependencies: ${{ inputs.install-system-dependencies }}
           direction: ${{ inputs.sd-direction }}
diff --git a/.github/workflows/roxygen.yaml b/.github/workflows/roxygen.yaml
index 48fa1a48..55da9332 100644
--- a/.github/workflows/roxygen.yaml
+++ b/.github/workflows/roxygen.yaml
@@ -59,7 +59,7 @@ jobs:
       !contains(github.event.commits[0].message, '[skip roxygen]')
         && github.event.pull_request.draft == false
     container:
-      image: ghcr.io/insightsengineering/rstudio:2024.04.05
+      image: ghcr.io/insightsengineering/rstudio:latest
 
     steps:
       - name: Setup token 🔑
@@ -131,7 +131,7 @@ jobs:
         env:
           GITHUB_PAT: ${{ steps.github-token.outputs.token }}
         with:
-          path: ${{ github.event.repository.name }}
+          path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}
           enable-check: ${{ inputs.enable-staged-dependencies-check }}
           run-system-dependencies: ${{ inputs.install-system-dependencies }}
           direction: ${{ inputs.sd-direction }}
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index e8171896..cecc5138 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -101,7 +101,7 @@ jobs:
       !contains(github.event.commits[0].message, '[skip coverage]')
         && github.event.pull_request.draft == false
     container:
-      image: ghcr.io/insightsengineering/rstudio:2024.04.05
+      image: ghcr.io/insightsengineering/rstudio:latest
     outputs:
       publish-coverage-html-report: ${{ steps.coverage-output.outputs.coverage-upload }}
       current-branch-or-tag: ${{ steps.current-branch-or-tag.outputs.ref-name }}
@@ -229,7 +229,7 @@ jobs:
         env:
           GITHUB_PAT: ${{ secrets.REPO_GITHUB_TOKEN }}
         with:
-          path: ${{ github.event.repository.name }}
+          path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}
           enable-check: ${{ inputs.enable-staged-dependencies-check }}
           run-system-dependencies: ${{ inputs.install-system-dependencies }}
           direction: ${{ inputs.sd-direction }}

From e2d712e5f4d6db4c5027d2a0587d70465c01ffcb Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Tue, 23 Apr 2024 12:39:44 +0200
Subject: [PATCH 10/11] Cleanup

---
 .github/workflows/build-check-install.yaml | 12 ------------
 .github/workflows/roxygen.yaml             | 12 ------------
 .github/workflows/test-coverage.yaml       | 12 ------------
 3 files changed, 36 deletions(-)

diff --git a/.github/workflows/build-check-install.yaml b/.github/workflows/build-check-install.yaml
index 59a3d437..09158b3d 100644
--- a/.github/workflows/build-check-install.yaml
+++ b/.github/workflows/build-check-install.yaml
@@ -359,18 +359,6 @@ jobs:
           update.packages()
         shell: Rscript {0}
 
-      # - name: Test
-      #   shell: bash
-      #   run: |
-      #     # apt update && apt install -yq tree
-      #     echo "pwd = $(pwd)"
-      #     ls -la
-      #     # tree -a .
-      #     R -q -e 'packageVersion("git2r")'
-      #     chmod -R 777 ${{ github.event.repository.name }}
-      #     ls -la
-      #     ls -la ${{ github.event.repository.name }}
-
       - name: Run Staged dependencies 🎦
         if: >-
           env.enable_sd == 'true'
diff --git a/.github/workflows/roxygen.yaml b/.github/workflows/roxygen.yaml
index 55da9332..e6210382 100644
--- a/.github/workflows/roxygen.yaml
+++ b/.github/workflows/roxygen.yaml
@@ -114,18 +114,6 @@ jobs:
           key: sd-${{ runner.os }}-${{ github.event.repository.name }}
           path: ~/.staged.dependencies
 
-      # - name: Test
-      #   shell: bash
-      #   run: |
-      #     # apt update && apt install -yq tree
-      #     echo "pwd = $(pwd)"
-      #     ls -la
-      #     # tree -a .
-      #     R -q -e 'packageVersion("git2r")'
-      #     chmod -R 777 ${{ github.event.repository.name }}
-      #     ls -la
-      #     ls -la ${{ github.event.repository.name }}
-
       - name: Run Staged dependencies 🎦
         uses: insightsengineering/staged-dependencies-action@v1
         env:
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index cecc5138..9966b695 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -206,18 +206,6 @@ jobs:
           }
           fi
 
-      # - name: Test
-      #   shell: bash
-      #   run: |
-      #     # apt update && apt install -yq tree
-      #     echo "pwd = $(pwd)"
-      #     ls -la
-      #     # tree -a .
-      #     R -q -e 'packageVersion("git2r")'
-      #     chmod -R 777 ${{ github.event.repository.name }}
-      #     ls -la
-      #     ls -la ${{ github.event.repository.name }}
-
       - name: Restore SD cache 💰
         uses: actions/cache@v4
         with:

From d2e54907b3b7e38a8a6679691dcf4dd7381032e4 Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Tue, 23 Apr 2024 12:48:39 +0200
Subject: [PATCH 11/11] Switch to actions/checkout@v4.1.1 in all workflows

---
 .github/workflows/audit.yaml               |  4 ++--
 .github/workflows/bioccheck.yaml           |  4 ++--
 .github/workflows/branch-cleanup.yaml      |  2 +-
 .github/workflows/build-check-install.yaml | 10 +++++-----
 .github/workflows/gitleaks.yaml            |  8 ++++----
 .github/workflows/grammar.yaml             |  4 ++--
 .github/workflows/licenses.yaml            |  4 ++--
 .github/workflows/links.yaml               |  4 ++--
 .github/workflows/linter.yaml              |  8 ++++----
 .github/workflows/pkgdown.yaml             | 10 +++++-----
 .github/workflows/release.yaml             |  2 +-
 .github/workflows/roxygen.yaml             |  2 +-
 .github/workflows/spelling.yaml            |  4 ++--
 .github/workflows/style.yaml               |  4 ++--
 .github/workflows/test-coverage.yaml       |  8 ++++----
 .github/workflows/validation.yaml          |  6 +++---
 .github/workflows/verdepcheck.yaml         |  2 +-
 .github/workflows/version-bump.yaml        |  2 +-
 .github/workflows/version.yaml             |  8 ++++----
 19 files changed, 48 insertions(+), 48 deletions(-)

diff --git a/.github/workflows/audit.yaml b/.github/workflows/audit.yaml
index 6ddf6db0..0a5ad5da 100644
--- a/.github/workflows/audit.yaml
+++ b/.github/workflows/audit.yaml
@@ -41,7 +41,7 @@ jobs:
         uses: tj-actions/branch-names@v7
 
       - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name == 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
@@ -49,7 +49,7 @@ jobs:
           fetch-depth: 1
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name != 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
diff --git a/.github/workflows/bioccheck.yaml b/.github/workflows/bioccheck.yaml
index d79b4179..022be715 100644
--- a/.github/workflows/bioccheck.yaml
+++ b/.github/workflows/bioccheck.yaml
@@ -93,7 +93,7 @@ jobs:
         uses: tj-actions/branch-names@v7
 
       - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name == 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
@@ -101,7 +101,7 @@ jobs:
           repository: ${{ github.event.pull_request.head.repo.full_name }}
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name != 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
diff --git a/.github/workflows/branch-cleanup.yaml b/.github/workflows/branch-cleanup.yaml
index f9b09b25..97b042fd 100644
--- a/.github/workflows/branch-cleanup.yaml
+++ b/.github/workflows/branch-cleanup.yaml
@@ -37,7 +37,7 @@ jobs:
         shell: bash
 
       - name: Checkout Code 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
 
       - name: Cleanup branches 🌿
         uses: phpdocker-io/github-actions-delete-abandoned-branches@v1
diff --git a/.github/workflows/build-check-install.yaml b/.github/workflows/build-check-install.yaml
index 09158b3d..04ed446e 100644
--- a/.github/workflows/build-check-install.yaml
+++ b/.github/workflows/build-check-install.yaml
@@ -240,7 +240,7 @@ jobs:
           fetch-depth: 0
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name != 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
@@ -265,7 +265,7 @@ jobs:
           inputs.publish-unit-test-report-gh-pages == true
             && github.event_name != 'pull_request'
         id: checkout-gh-pages
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         with:
           ref: gh-pages
           path: gh-pages
@@ -488,7 +488,7 @@ jobs:
 
       - name: Fetch report from ${{ env.junit_xml_storage }} ⤵️
         if: env.junit_xml_comparison == 'true'
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         with:
           path: ${{ env.junit_xml_storage }}
           fetch-depth: 0
@@ -587,7 +587,7 @@ jobs:
 
       - name: Fetch JUnit XML reports from ${{ env.junit_xml_storage }} ⤵️
         if: steps.check-junit-xml.outputs.files_exists == 'true' && env.junit_xml_comparison == 'true'
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         with:
           path: ${{ env.junit_xml_storage }}
           fetch-depth: 0
@@ -858,7 +858,7 @@ jobs:
 
     steps:
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
 
       - name: Get package build filename 📦
         run: |
diff --git a/.github/workflows/gitleaks.yaml b/.github/workflows/gitleaks.yaml
index 07c8223d..4decb2b9 100644
--- a/.github/workflows/gitleaks.yaml
+++ b/.github/workflows/gitleaks.yaml
@@ -45,14 +45,14 @@ jobs:
         uses: tj-actions/branch-names@v7
 
       - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name == 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
           repository: ${{ github.event.pull_request.head.repo.full_name }}
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name != 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
@@ -103,7 +103,7 @@ jobs:
         uses: tj-actions/branch-names@v7
 
       - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name == 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
@@ -111,7 +111,7 @@ jobs:
           fetch-depth: 0
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name != 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
diff --git a/.github/workflows/grammar.yaml b/.github/workflows/grammar.yaml
index e2a16a7d..a5671181 100644
--- a/.github/workflows/grammar.yaml
+++ b/.github/workflows/grammar.yaml
@@ -44,14 +44,14 @@ jobs:
         uses: tj-actions/branch-names@v7
 
       - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name == 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
           repository: ${{ github.event.pull_request.head.repo.full_name }}
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name != 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
diff --git a/.github/workflows/licenses.yaml b/.github/workflows/licenses.yaml
index bf105903..66d98ca3 100644
--- a/.github/workflows/licenses.yaml
+++ b/.github/workflows/licenses.yaml
@@ -39,14 +39,14 @@ jobs:
         uses: tj-actions/branch-names@v7
 
       - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name == 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
           repository: ${{ github.event.pull_request.head.repo.full_name }}
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name != 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
diff --git a/.github/workflows/links.yaml b/.github/workflows/links.yaml
index 403ca526..768dd205 100644
--- a/.github/workflows/links.yaml
+++ b/.github/workflows/links.yaml
@@ -39,14 +39,14 @@ jobs:
         uses: tj-actions/branch-names@v7
 
       - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name == 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
           repository: ${{ github.event.pull_request.head.repo.full_name }}
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name != 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
diff --git a/.github/workflows/linter.yaml b/.github/workflows/linter.yaml
index 88d45551..28067889 100644
--- a/.github/workflows/linter.yaml
+++ b/.github/workflows/linter.yaml
@@ -45,7 +45,7 @@ jobs:
         uses: tj-actions/branch-names@v7
 
       - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name == 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
@@ -53,7 +53,7 @@ jobs:
           fetch-depth: 0
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name != 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
@@ -121,14 +121,14 @@ jobs:
 
     steps:
       - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name == 'pull_request'
         with:
           ref: ${{ github.event.pull_request.head.sha }}
           fetch-depth: 0
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name != 'pull_request'
         with:
           fetch-depth: 0
diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
index 7e18c672..d2a0142d 100644
--- a/.github/workflows/pkgdown.yaml
+++ b/.github/workflows/pkgdown.yaml
@@ -160,7 +160,7 @@ jobs:
         shell: bash
 
       - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name == 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
@@ -168,7 +168,7 @@ jobs:
           repository: ${{ github.event.pull_request.head.repo.full_name }}
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name != 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
@@ -243,7 +243,7 @@ jobs:
 
       - name: Checkout gh-pages 🛎
         if: startsWith(github.ref, 'refs/tags/v') || github.event_name == 'push'
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         with:
           path: "gh-pages"
           fetch-depth: 0
@@ -300,7 +300,7 @@ jobs:
         && !contains(github.event.commits[0].message, '[skip docs]')
     steps:
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         with:
           path: ${{ github.event.repository.name }}
           ref: "gh-pages"
@@ -336,7 +336,7 @@ jobs:
         && !contains(github.event.commits[0].message, '[skip docs]')
     steps:
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
 
       - name: Download artifact ⏬
         uses: actions/download-artifact@v4
diff --git a/.github/workflows/release.yaml b/.github/workflows/release.yaml
index 543cd005..c262048f 100644
--- a/.github/workflows/release.yaml
+++ b/.github/workflows/release.yaml
@@ -50,7 +50,7 @@ jobs:
         shell: bash
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
 
       - name: Check commit message 💬
         run: |
diff --git a/.github/workflows/roxygen.yaml b/.github/workflows/roxygen.yaml
index e6210382..497f6b03 100644
--- a/.github/workflows/roxygen.yaml
+++ b/.github/workflows/roxygen.yaml
@@ -88,7 +88,7 @@ jobs:
           token: ${{ steps.github-token.outputs.token }}
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name != 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
diff --git a/.github/workflows/spelling.yaml b/.github/workflows/spelling.yaml
index 8d1e335a..3f594e7d 100644
--- a/.github/workflows/spelling.yaml
+++ b/.github/workflows/spelling.yaml
@@ -63,7 +63,7 @@ jobs:
         uses: tj-actions/branch-names@v7
 
       - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name == 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
@@ -72,7 +72,7 @@ jobs:
           token: ${{ steps.github-token.outputs.token }}
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name != 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
diff --git a/.github/workflows/style.yaml b/.github/workflows/style.yaml
index 5a24b8a8..4572694a 100644
--- a/.github/workflows/style.yaml
+++ b/.github/workflows/style.yaml
@@ -64,7 +64,7 @@ jobs:
         uses: tj-actions/branch-names@v7
 
       - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name == 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
@@ -74,7 +74,7 @@ jobs:
           token: ${{ steps.github-token.outputs.token }}
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name != 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index 9966b695..9ab106e4 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -131,7 +131,7 @@ jobs:
           github.event_name != 'pull_request'
             && inputs.publish-coverage-report-gh-pages == true
         id: checkout-gh-pages
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         with:
           ref: gh-pages
           path: gh-pages
@@ -175,7 +175,7 @@ jobs:
           repository: ${{ github.event.pull_request.head.repo.full_name }}
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name != 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
@@ -333,7 +333,7 @@ jobs:
         uses: tj-actions/branch-names@v7
 
       - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name == 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
@@ -341,7 +341,7 @@ jobs:
           repository: ${{ github.event.pull_request.head.repo.full_name }}
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name != 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
diff --git a/.github/workflows/validation.yaml b/.github/workflows/validation.yaml
index 33e95151..0396f549 100644
--- a/.github/workflows/validation.yaml
+++ b/.github/workflows/validation.yaml
@@ -79,14 +79,14 @@ jobs:
         uses: tj-actions/branch-names@v7
 
       - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name == 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
           repository: ${{ github.event.pull_request.head.repo.full_name }}
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name != 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
@@ -148,7 +148,7 @@ jobs:
     if: startsWith(github.ref, 'refs/tags/v')
     steps:
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
 
       - name: Download artifact ⏬
         uses: actions/download-artifact@v4
diff --git a/.github/workflows/verdepcheck.yaml b/.github/workflows/verdepcheck.yaml
index 5c352207..9dd4a5e2 100644
--- a/.github/workflows/verdepcheck.yaml
+++ b/.github/workflows/verdepcheck.yaml
@@ -67,7 +67,7 @@ jobs:
         uses: tj-actions/branch-names@v7
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
           fetch-depth: 1
diff --git a/.github/workflows/version-bump.yaml b/.github/workflows/version-bump.yaml
index cf1b7c9b..1ea6190e 100644
--- a/.github/workflows/version-bump.yaml
+++ b/.github/workflows/version-bump.yaml
@@ -61,7 +61,7 @@ jobs:
         uses: tj-actions/branch-names@v7
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
           token: ${{ steps.github-token.outputs.token }}
diff --git a/.github/workflows/version.yaml b/.github/workflows/version.yaml
index 58264edf..7e4c2506 100644
--- a/.github/workflows/version.yaml
+++ b/.github/workflows/version.yaml
@@ -40,14 +40,14 @@ jobs:
         uses: tj-actions/branch-names@v7
 
       - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name == 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
           repository: ${{ github.event.pull_request.head.repo.full_name }}
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name != 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
@@ -103,14 +103,14 @@ jobs:
         uses: tj-actions/branch-names@v7
 
       - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name == 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
           repository: ${{ github.event.pull_request.head.repo.full_name }}
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         if: github.event_name != 'pull_request'
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}