From 7903995257f77ac387d460355dccf13a2ba678bb Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Mon, 15 Apr 2024 18:11:29 +0200
Subject: [PATCH 01/12] Initialize revdepcheck action

---
 .github/workflows/revdepcheck.yaml | 93 ++++++++++++++++++++++++++++++
 1 file changed, 93 insertions(+)
 create mode 100644 .github/workflows/revdepcheck.yaml

diff --git a/.github/workflows/revdepcheck.yaml b/.github/workflows/revdepcheck.yaml
new file mode 100644
index 00000000..7701d829
--- /dev/null
+++ b/.github/workflows/revdepcheck.yaml
@@ -0,0 +1,93 @@
+---
+name: revdepcheck ⏪
+
+on:
+  workflow_dispatch:
+  workflow_call:
+    secrets:
+      REPO_GITHUB_TOKEN:
+        description: |
+          Github token with read access to repositories, required for dependencies installation
+        required: false
+      GCHAT_WEBHOOK:
+        description: |
+          Google Chat webhook to send failure notifications
+        required: false
+    inputs:
+      additional-env-vars:
+        description: |
+          Extra environment variables, as a 'key=value' pair, with each pair on a new line.
+          Example usage:
+          additional-env-vars: |
+            ABC=123
+            XYZ=456
+        required: false
+        default: ""
+        type: string
+
+jobs:
+  dependency-test:
+    name: revdepcheck ⏪
+    runs-on: ubuntu-latest
+    if: >
+      !contains(github.event.commits[0].message, '[skip revdepcheck]')
+        && github.event.pull_request.draft == false
+    container:
+      image: ghcr.io/insightsengineering/rstudio:latest
+
+    steps:
+      - name: Setup token 🔑
+        id: github-token
+        run: |
+          if [ "${{ secrets.REPO_GITHUB_TOKEN }}" == "" ]; then
+            echo "REPO_GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN."
+            echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
+          else
+            echo "Using REPO_GITHUB_TOKEN."
+            echo "token=${{ secrets.REPO_GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
+          fi
+        shell: bash
+
+      - name: Get branch names 🌿
+        id: branch-name
+        uses: tj-actions/branch-names@v7
+
+      - name: Checkout repo 🛎
+        uses: actions/checkout@v4
+        with:
+          ref: ${{ steps.branch-name.outputs.head_ref_branch }}
+          fetch-depth: 1
+
+      - name: Check commit message 💬
+        run: |
+          git config --global --add safe.directory $(pwd)
+          export head_commit_message="$(git show -s --format=%B | tr '\r\n' ' ' | tr '\n' ' ')"
+          echo "head_commit_message = $head_commit_message"
+          if [[ $head_commit_message == *"$SKIP_INSTRUCTION"* ]]; then
+            echo "Skip instruction detected - cancelling the workflow."
+            exit 1
+          fi
+        shell: bash
+        env:
+          SKIP_INSTRUCTION: "[skip revdepcheck]"
+
+      - name: Normalize variables 📏
+        run: |
+          echo "gchat_webhook=${{ secrets.GCHAT_WEBHOOK }}" >> $GITHUB_ENV
+        shell: bash
+
+      - name: revdepcheck 🔄
+        id: revdepcheck
+        # TODO update branch to main
+        uses: insightsengineering/r-revdepcheck-action@initialize-action
+        with:
+          github-token: ${{ steps.github-token.outputs.token }}
+          additional-env-vars:  ${{ inputs.additional-env-vars }}
+
+      - name: GChat notification 🔔
+        if: (failure() || cancelled()) && steps.revdepcheck.outcome != 'success' && env.gchat_webhook != ''
+        uses: insightsengineering/google-chat-notification@master
+        with:
+          name: ${{ github.event.repository.name }} - revdepcheck - ${{ env.strategy }}
+          url: ${{ secrets.GCHAT_WEBHOOK }}
+          status: ${{ job.status }}

From faf8026f4b940dc87122f44075a5d4cb2e8d8e5d Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Mon, 15 Apr 2024 18:22:12 +0200
Subject: [PATCH 02/12] Update

---
 .github/workflows/revdepcheck.yaml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/revdepcheck.yaml b/.github/workflows/revdepcheck.yaml
index 7701d829..7feba7e2 100644
--- a/.github/workflows/revdepcheck.yaml
+++ b/.github/workflows/revdepcheck.yaml
@@ -31,7 +31,8 @@ jobs:
     runs-on: ubuntu-latest
     if: >
       !contains(github.event.commits[0].message, '[skip revdepcheck]')
-        && github.event.pull_request.draft == false
+    # Restore this in the if condition
+    #    && github.event.pull_request.draft == false
     container:
       image: ghcr.io/insightsengineering/rstudio:latest
 

From fddc5b46f611c89c72baaa56f1eca1b1712a51e6 Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Wed, 17 Apr 2024 15:12:00 +0200
Subject: [PATCH 03/12] List revdep directory

---
 .github/workflows/revdepcheck.yaml | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/.github/workflows/revdepcheck.yaml b/.github/workflows/revdepcheck.yaml
index 7feba7e2..fea37fb8 100644
--- a/.github/workflows/revdepcheck.yaml
+++ b/.github/workflows/revdepcheck.yaml
@@ -92,3 +92,9 @@ jobs:
           name: ${{ github.event.repository.name }} - revdepcheck - ${{ env.strategy }}
           url: ${{ secrets.GCHAT_WEBHOOK }}
           status: ${{ job.status }}
+
+      - name: List revdep directory
+        run: |
+          ls -la revdep
+          du -sh ./revdep
+        shell: bash

From 1e0f2c5cce3218f3d9392f9835334d2cd9fb5602 Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Wed, 17 Apr 2024 16:22:01 +0200
Subject: [PATCH 04/12] Upload artifact

---
 .github/workflows/revdepcheck.yaml | 17 ++++++++++++++---
 1 file changed, 14 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/revdepcheck.yaml b/.github/workflows/revdepcheck.yaml
index fea37fb8..38c815d6 100644
--- a/.github/workflows/revdepcheck.yaml
+++ b/.github/workflows/revdepcheck.yaml
@@ -77,6 +77,11 @@ jobs:
           echo "gchat_webhook=${{ secrets.GCHAT_WEBHOOK }}" >> $GITHUB_ENV
         shell: bash
 
+      - name: List CPU info
+        run: |
+          cat /proc/cpuinfo
+        shell: bash
+
       - name: revdepcheck 🔄
         id: revdepcheck
         # TODO update branch to main
@@ -93,8 +98,14 @@ jobs:
           url: ${{ secrets.GCHAT_WEBHOOK }}
           status: ${{ job.status }}
 
-      - name: List revdep directory
+      - name: Prepare revdep artifact
         run: |
-          ls -la revdep
-          du -sh ./revdep
+          rm -rf revdep/library.noindex
+          zip -r9 revdep.zip revdep/
         shell: bash
+
+      - name: Upload artifact ⬆
+        uses: actions/upload-artifact@v4
+        with:
+          name: revdep
+          path: revdep.zip

From add60e7456181acfe3fb4421aab724fa1ac55464 Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Wed, 17 Apr 2024 18:05:46 +0200
Subject: [PATCH 05/12] Update

---
 .github/workflows/revdepcheck.yaml | 8 +-------
 1 file changed, 1 insertion(+), 7 deletions(-)

diff --git a/.github/workflows/revdepcheck.yaml b/.github/workflows/revdepcheck.yaml
index 38c815d6..e2737a1f 100644
--- a/.github/workflows/revdepcheck.yaml
+++ b/.github/workflows/revdepcheck.yaml
@@ -77,11 +77,6 @@ jobs:
           echo "gchat_webhook=${{ secrets.GCHAT_WEBHOOK }}" >> $GITHUB_ENV
         shell: bash
 
-      - name: List CPU info
-        run: |
-          cat /proc/cpuinfo
-        shell: bash
-
       - name: revdepcheck 🔄
         id: revdepcheck
         # TODO update branch to main
@@ -101,11 +96,10 @@ jobs:
       - name: Prepare revdep artifact
         run: |
           rm -rf revdep/library.noindex
-          zip -r9 revdep.zip revdep/
         shell: bash
 
       - name: Upload artifact ⬆
         uses: actions/upload-artifact@v4
         with:
           name: revdep
-          path: revdep.zip
+          path: revdep/

From 81988a10ddc51a5c4434ba38a8bd96451517954c Mon Sep 17 00:00:00 2001
From: walkowif <59475134+walkowif@users.noreply.github.com>
Date: Thu, 18 Apr 2024 09:24:49 +0200
Subject: [PATCH 06/12] Update .github/workflows/revdepcheck.yaml

Co-authored-by: Pawel Rucki <12943682+pawelru@users.noreply.github.com>
Signed-off-by: walkowif <59475134+walkowif@users.noreply.github.com>
---
 .github/workflows/revdepcheck.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/revdepcheck.yaml b/.github/workflows/revdepcheck.yaml
index e2737a1f..abdeab65 100644
--- a/.github/workflows/revdepcheck.yaml
+++ b/.github/workflows/revdepcheck.yaml
@@ -96,6 +96,7 @@ jobs:
       - name: Prepare revdep artifact
         run: |
           rm -rf revdep/library.noindex
+          rm -rf revdep/library
         shell: bash
 
       - name: Upload artifact ⬆

From aa155f992071fb81ec1d04c5cfd7817cde1f7c0d Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Fri, 19 Apr 2024 12:34:34 +0200
Subject: [PATCH 07/12] List cache directories

---
 .github/workflows/revdepcheck.yaml | 12 ++++++++++++
 1 file changed, 12 insertions(+)

diff --git a/.github/workflows/revdepcheck.yaml b/.github/workflows/revdepcheck.yaml
index abdeab65..9f0dd5ea 100644
--- a/.github/workflows/revdepcheck.yaml
+++ b/.github/workflows/revdepcheck.yaml
@@ -85,6 +85,18 @@ jobs:
           github-token: ${{ steps.github-token.outputs.token }}
           additional-env-vars:  ${{ inputs.additional-env-vars }}
 
+      - name: Get cache
+        run : |
+          crancache_path="$(R -q -e 'cat(crancache::get_cache_dir(), "\n")' 2>/dev/null | head -2 | tail -1 | tr -d ' ')"
+          pkgcache_path="$(R -q -e 'cat(pkgcache::pkg_cache_summary()$cachepath, "\n")' 2>/dev/null | head -2 | tail -1 | tr -d ' ')"
+          echo "crancache_path = $crancache_path"
+          echo "pkgcache_path = $pkgcache_path"
+          echo "crancache size:"
+          du -sh "$crancache_path" || true
+          echo "pkgcache size:"
+          du -sh "$pkgcache_path" || true
+        shell: bash
+
       - name: GChat notification 🔔
         if: (failure() || cancelled()) && steps.revdepcheck.outcome != 'success' && env.gchat_webhook != ''
         uses: insightsengineering/google-chat-notification@master

From da5a77dd2a2fcbd204163d322facbcb81ae83be8 Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Fri, 19 Apr 2024 12:38:22 +0200
Subject: [PATCH 08/12] Update

---
 .github/workflows/revdepcheck.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/revdepcheck.yaml b/.github/workflows/revdepcheck.yaml
index 9f0dd5ea..2bac617e 100644
--- a/.github/workflows/revdepcheck.yaml
+++ b/.github/workflows/revdepcheck.yaml
@@ -86,6 +86,7 @@ jobs:
           additional-env-vars:  ${{ inputs.additional-env-vars }}
 
       - name: Get cache
+        if: always()
         run : |
           crancache_path="$(R -q -e 'cat(crancache::get_cache_dir(), "\n")' 2>/dev/null | head -2 | tail -1 | tr -d ' ')"
           pkgcache_path="$(R -q -e 'cat(pkgcache::pkg_cache_summary()$cachepath, "\n")' 2>/dev/null | head -2 | tail -1 | tr -d ' ')"

From 4524a0383d1a2504e0581ffa4e2bdffab71e7e30 Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Fri, 19 Apr 2024 14:58:47 +0200
Subject: [PATCH 09/12] Debug cache

---
 .github/workflows/revdepcheck.yaml | 15 ++++++++++++++-
 1 file changed, 14 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/revdepcheck.yaml b/.github/workflows/revdepcheck.yaml
index 2bac617e..ca0e829b 100644
--- a/.github/workflows/revdepcheck.yaml
+++ b/.github/workflows/revdepcheck.yaml
@@ -59,6 +59,16 @@ jobs:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
           fetch-depth: 1
 
+      - name: Debug
+        run: |
+          echo "Home is at: $(echo ~)"
+
+      - name: Restore cache 💰
+        uses: actions/cache@v4
+        with:
+          key: revdepcheck-${{ runner.os }}-${{ github.event.repository.name }}
+          path: /github/home/.cache/R/pkgcache/pkg
+
       - name: Check commit message 💬
         run: |
           git config --global --add safe.directory $(pwd)
@@ -88,7 +98,7 @@ jobs:
       - name: Get cache
         if: always()
         run : |
-          crancache_path="$(R -q -e 'cat(crancache::get_cache_dir(), "\n")' 2>/dev/null | head -2 | tail -1 | tr -d ' ')"
+          crancache_path="$(R -q -e 'cat(normalizePath(crancache::get_cache_dir()), "\n")' 2>/dev/null | head -2 | tail -1 | tr -d ' ')"
           pkgcache_path="$(R -q -e 'cat(pkgcache::pkg_cache_summary()$cachepath, "\n")' 2>/dev/null | head -2 | tail -1 | tr -d ' ')"
           echo "crancache_path = $crancache_path"
           echo "pkgcache_path = $pkgcache_path"
@@ -96,6 +106,9 @@ jobs:
           du -sh "$crancache_path" || true
           echo "pkgcache size:"
           du -sh "$pkgcache_path" || true
+          apt-get update && apt-get install -yq tree
+          echo "listing cache directory"
+          tree ~/.cache
         shell: bash
 
       - name: GChat notification 🔔

From e2a03c5a8927d8132253af231af170278065c4cc Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Fri, 19 Apr 2024 16:12:06 +0200
Subject: [PATCH 10/12] Also cache crancache

---
 .github/workflows/revdepcheck.yaml | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/revdepcheck.yaml b/.github/workflows/revdepcheck.yaml
index ca0e829b..0e5a3ecf 100644
--- a/.github/workflows/revdepcheck.yaml
+++ b/.github/workflows/revdepcheck.yaml
@@ -67,7 +67,9 @@ jobs:
         uses: actions/cache@v4
         with:
           key: revdepcheck-${{ runner.os }}-${{ github.event.repository.name }}
-          path: /github/home/.cache/R/pkgcache/pkg
+          path: |
+            /github/home/.cache/R/pkgcache/pkg
+            /github/home/.cache/R-crancache
 
       - name: Check commit message 💬
         run: |

From 4ebc21731dd02d3f902eb083dc45aaaa6209e476 Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Thu, 25 Apr 2024 13:35:20 +0200
Subject: [PATCH 11/12] Cleanup

---
 .github/workflows/revdepcheck.yaml | 34 ++++++------------------------
 1 file changed, 6 insertions(+), 28 deletions(-)

diff --git a/.github/workflows/revdepcheck.yaml b/.github/workflows/revdepcheck.yaml
index 0e5a3ecf..e89464a6 100644
--- a/.github/workflows/revdepcheck.yaml
+++ b/.github/workflows/revdepcheck.yaml
@@ -26,13 +26,12 @@ on:
         type: string
 
 jobs:
-  dependency-test:
+  revdepcheck:
     name: revdepcheck ⏪
     runs-on: ubuntu-latest
     if: >
       !contains(github.event.commits[0].message, '[skip revdepcheck]')
-    # Restore this in the if condition
-    #    && github.event.pull_request.draft == false
+       && github.event.pull_request.draft == false
     container:
       image: ghcr.io/insightsengineering/rstudio:latest
 
@@ -54,22 +53,18 @@ jobs:
         uses: tj-actions/branch-names@v7
 
       - name: Checkout repo 🛎
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
         with:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
           fetch-depth: 1
 
-      - name: Debug
-        run: |
-          echo "Home is at: $(echo ~)"
-
       - name: Restore cache 💰
         uses: actions/cache@v4
         with:
           key: revdepcheck-${{ runner.os }}-${{ github.event.repository.name }}
           path: |
-            /github/home/.cache/R/pkgcache/pkg
-            /github/home/.cache/R-crancache
+            ~/.cache/R/pkgcache/pkg
+            ~/.cache/R-crancache
 
       - name: Check commit message 💬
         run: |
@@ -91,28 +86,11 @@ jobs:
 
       - name: revdepcheck 🔄
         id: revdepcheck
-        # TODO update branch to main
         uses: insightsengineering/r-revdepcheck-action@initialize-action
         with:
           github-token: ${{ steps.github-token.outputs.token }}
           additional-env-vars:  ${{ inputs.additional-env-vars }}
 
-      - name: Get cache
-        if: always()
-        run : |
-          crancache_path="$(R -q -e 'cat(normalizePath(crancache::get_cache_dir()), "\n")' 2>/dev/null | head -2 | tail -1 | tr -d ' ')"
-          pkgcache_path="$(R -q -e 'cat(pkgcache::pkg_cache_summary()$cachepath, "\n")' 2>/dev/null | head -2 | tail -1 | tr -d ' ')"
-          echo "crancache_path = $crancache_path"
-          echo "pkgcache_path = $pkgcache_path"
-          echo "crancache size:"
-          du -sh "$crancache_path" || true
-          echo "pkgcache size:"
-          du -sh "$pkgcache_path" || true
-          apt-get update && apt-get install -yq tree
-          echo "listing cache directory"
-          tree ~/.cache
-        shell: bash
-
       - name: GChat notification 🔔
         if: (failure() || cancelled()) && steps.revdepcheck.outcome != 'success' && env.gchat_webhook != ''
         uses: insightsengineering/google-chat-notification@master
@@ -121,7 +99,7 @@ jobs:
           url: ${{ secrets.GCHAT_WEBHOOK }}
           status: ${{ job.status }}
 
-      - name: Prepare revdep artifact
+      - name: Prepare revdep artifact 🎁
         run: |
           rm -rf revdep/library.noindex
           rm -rf revdep/library

From b66f8dc4b16a62c2f50d128eeb07cc08dafee2d5 Mon Sep 17 00:00:00 2001
From: walkowif <59475134+walkowif@users.noreply.github.com>
Date: Thu, 25 Apr 2024 17:31:17 +0200
Subject: [PATCH 12/12] Update .github/workflows/revdepcheck.yaml

Signed-off-by: walkowif <59475134+walkowif@users.noreply.github.com>
---
 .github/workflows/revdepcheck.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/revdepcheck.yaml b/.github/workflows/revdepcheck.yaml
index e89464a6..73f6eacb 100644
--- a/.github/workflows/revdepcheck.yaml
+++ b/.github/workflows/revdepcheck.yaml
@@ -86,7 +86,7 @@ jobs:
 
       - name: revdepcheck 🔄
         id: revdepcheck
-        uses: insightsengineering/r-revdepcheck-action@initialize-action
+        uses: insightsengineering/r-revdepcheck-action@main
         with:
           github-token: ${{ steps.github-token.outputs.token }}
           additional-env-vars:  ${{ inputs.additional-env-vars }}