From 0c077dc34ad660e609fe0f9bd08a2df7390534fe Mon Sep 17 00:00:00 2001
From: "github-actions[bot]"
 <41898282+github-actions[bot]@users.noreply.github.com>
Date: Fri, 23 Feb 2024 15:07:39 +0000
Subject: [PATCH] Update pkgdown documentation
 518126054a5961153bd4f437a4b44682aa54cdf5

---
 main/404.html                   |  8 +-------
 main/CODE_OF_CONDUCT.html       |  8 +-------
 main/CONTRIBUTING.html          |  8 +-------
 main/LICENSE-text.html          |  8 +-------
 main/PULL_REQUEST_TEMPLATE.html |  8 +-------
 main/SECURITY.html              |  8 +-------
 main/articles/hello.html        | 10 ++--------
 main/articles/index.html        |  8 +-------
 main/authors.html               | 12 +++---------
 main/index.html                 |  8 +-------
 main/news/index.html            | 16 +++++-----------
 main/pkgdown.yml                |  2 +-
 main/reference/hello.html       |  8 +-------
 main/reference/index.html       |  8 +-------
 main/reference/plumber_api.html |  8 +-------
 main/reference/shiny_app.html   |  8 +-------
 main/search.json                |  2 +-
 main/workflows.html             |  8 +-------
 18 files changed, 25 insertions(+), 121 deletions(-)

diff --git a/main/404.html b/main/404.html
index 1731473a..a6d6ebea 100644
--- a/main/404.html
+++ b/main/404.html
@@ -29,7 +29,7 @@
     
     <a class="navbar-brand me-2" href="https://insightsengineering.github.io/r.pkg.template/index.html">r.pkg.template</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9142</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9143</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -50,12 +50,6 @@
 <li class="nav-item">
   <a class="nav-link" href="https://insightsengineering.github.io/r.pkg.template/news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/r.pkg.template/main">main</a> </div></li>
-<!-- end dropdown for versions -->
       </ul>
 <form class="form-inline my-2 my-lg-0" role="search">
         <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="search.json" id="search-input" placeholder="Search for" autocomplete="off">
diff --git a/main/CODE_OF_CONDUCT.html b/main/CODE_OF_CONDUCT.html
index 02704703..78eb0069 100644
--- a/main/CODE_OF_CONDUCT.html
+++ b/main/CODE_OF_CONDUCT.html
@@ -15,7 +15,7 @@
     
     <a class="navbar-brand me-2" href="index.html">r.pkg.template</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9142</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9143</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,12 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/r.pkg.template/main">main</a> </div></li>
-<!-- end dropdown for versions -->
       </ul><form class="form-inline my-2 my-lg-0" role="search">
         <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
 
diff --git a/main/CONTRIBUTING.html b/main/CONTRIBUTING.html
index c665f342..97bc3691 100644
--- a/main/CONTRIBUTING.html
+++ b/main/CONTRIBUTING.html
@@ -15,7 +15,7 @@
     
     <a class="navbar-brand me-2" href="index.html">r.pkg.template</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9142</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9143</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,12 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/r.pkg.template/main">main</a> </div></li>
-<!-- end dropdown for versions -->
       </ul><form class="form-inline my-2 my-lg-0" role="search">
         <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
 
diff --git a/main/LICENSE-text.html b/main/LICENSE-text.html
index 08e11015..f6b77092 100644
--- a/main/LICENSE-text.html
+++ b/main/LICENSE-text.html
@@ -15,7 +15,7 @@
     
     <a class="navbar-brand me-2" href="index.html">r.pkg.template</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9142</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9143</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,12 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/r.pkg.template/main">main</a> </div></li>
-<!-- end dropdown for versions -->
       </ul><form class="form-inline my-2 my-lg-0" role="search">
         <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
 
diff --git a/main/PULL_REQUEST_TEMPLATE.html b/main/PULL_REQUEST_TEMPLATE.html
index e14e5a01..0d74fbc4 100644
--- a/main/PULL_REQUEST_TEMPLATE.html
+++ b/main/PULL_REQUEST_TEMPLATE.html
@@ -15,7 +15,7 @@
     
     <a class="navbar-brand me-2" href="index.html">r.pkg.template</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9142</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9143</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,12 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/r.pkg.template/main">main</a> </div></li>
-<!-- end dropdown for versions -->
       </ul><form class="form-inline my-2 my-lg-0" role="search">
         <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
 
diff --git a/main/SECURITY.html b/main/SECURITY.html
index b6d3ab79..68a9dea2 100644
--- a/main/SECURITY.html
+++ b/main/SECURITY.html
@@ -15,7 +15,7 @@
     
     <a class="navbar-brand me-2" href="index.html">r.pkg.template</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9142</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9143</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,12 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/r.pkg.template/main">main</a> </div></li>
-<!-- end dropdown for versions -->
       </ul><form class="form-inline my-2 my-lg-0" role="search">
         <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
 
diff --git a/main/articles/hello.html b/main/articles/hello.html
index 7e09e1a9..36ba0907 100644
--- a/main/articles/hello.html
+++ b/main/articles/hello.html
@@ -31,7 +31,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">r.pkg.template</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9142</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9143</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -52,12 +52,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/r.pkg.template/main">main</a> </div></li>
-<!-- end dropdown for versions -->
       </ul>
 <form class="form-inline my-2 my-lg-0" role="search">
         <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off">
@@ -84,7 +78,7 @@
   <main id="main" class="col-md-9"><div class="page-header">
       <img src="" class="logo" alt=""><h1>Hello</h1>
             
-            <h4 data-toc-skip class="date">2024-02-22</h4>
+            <h4 data-toc-skip class="date">2024-02-23</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/insightsengineering/r.pkg.template/blob/HEAD/vignettes/hello.Rmd" class="external-link"><code>vignettes/hello.Rmd</code></a></small>
       <div class="d-none name"><code>hello.Rmd</code></div>
diff --git a/main/articles/index.html b/main/articles/index.html
index c341c813..c029383d 100644
--- a/main/articles/index.html
+++ b/main/articles/index.html
@@ -15,7 +15,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">r.pkg.template</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9142</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9143</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,12 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/r.pkg.template/main">main</a> </div></li>
-<!-- end dropdown for versions -->
       </ul><form class="form-inline my-2 my-lg-0" role="search">
         <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
 
diff --git a/main/authors.html b/main/authors.html
index 6f358912..de5de38b 100644
--- a/main/authors.html
+++ b/main/authors.html
@@ -15,7 +15,7 @@
     
     <a class="navbar-brand me-2" href="index.html">r.pkg.template</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9142</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9143</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,12 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/r.pkg.template/main">main</a> </div></li>
-<!-- end dropdown for versions -->
       </ul><form class="form-inline my-2 my-lg-0" role="search">
         <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
 
@@ -75,13 +69,13 @@ <h2 id="citation">Citation</h2>
 
       <p>insightsengineering (2024).
 <em>r.pkg.template: R Package Template</em>.
-R package version 0.1.0.9142, <a href="https://github.com/insightsengineering/r.pkg.template/" class="external-link">https://github.com/insightsengineering/r.pkg.template/</a>. 
+R package version 0.1.0.9143, <a href="https://github.com/insightsengineering/r.pkg.template/" class="external-link">https://github.com/insightsengineering/r.pkg.template/</a>. 
 </p>
       <pre>@Manual{,
   title = {r.pkg.template: R Package Template},
   author = {{insightsengineering}},
   year = {2024},
-  note = {R package version 0.1.0.9142},
+  note = {R package version 0.1.0.9143},
   url = {https://github.com/insightsengineering/r.pkg.template/},
 }</pre>
     </div>
diff --git a/main/index.html b/main/index.html
index 085a804a..b89909e8 100644
--- a/main/index.html
+++ b/main/index.html
@@ -31,7 +31,7 @@
     
     <a class="navbar-brand me-2" href="index.html">r.pkg.template</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9142</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9143</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -52,12 +52,6 @@
 <li class="nav-item">
   <a class="nav-link" href="news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/r.pkg.template/main">main</a> </div></li>
-<!-- end dropdown for versions -->
       </ul>
 <form class="form-inline my-2 my-lg-0" role="search">
         <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="search.json" id="search-input" placeholder="Search for" autocomplete="off">
diff --git a/main/news/index.html b/main/news/index.html
index 34bdcc29..2ae687db 100644
--- a/main/news/index.html
+++ b/main/news/index.html
@@ -15,7 +15,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">r.pkg.template</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9142</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9143</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,12 +35,6 @@
 <li class="active nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/r.pkg.template/main">main</a> </div></li>
-<!-- end dropdown for versions -->
       </ul><form class="form-inline my-2 my-lg-0" role="search">
         <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
 
@@ -62,17 +56,17 @@
     </div>
 
     <div class="section level2">
-<h2 class="pkg-version" data-toc-text="0.1.0.9142" id="rpkgtemplate-0109142">r.pkg.template 0.1.0.9142<a class="anchor" aria-label="anchor" href="#rpkgtemplate-0109142"></a></h2>
+<h2 class="pkg-version" data-toc-text="0.1.0.9143" id="rpkgtemplate-0109143">r.pkg.template 0.1.0.9143<a class="anchor" aria-label="anchor" href="#rpkgtemplate-0109143"></a></h2>
 <div class="section level4">
-<h4 id="new-features-0-1-0-9142">New features<a class="anchor" aria-label="anchor" href="#new-features-0-1-0-9142"></a></h4>
+<h4 id="new-features-0-1-0-9143">New features<a class="anchor" aria-label="anchor" href="#new-features-0-1-0-9143"></a></h4>
 <ul><li>Add an initializer script.</li>
 </ul></div>
 <div class="section level4">
-<h4 id="enhancements-0-1-0-9142">Enhancements<a class="anchor" aria-label="anchor" href="#enhancements-0-1-0-9142"></a></h4>
+<h4 id="enhancements-0-1-0-9143">Enhancements<a class="anchor" aria-label="anchor" href="#enhancements-0-1-0-9143"></a></h4>
 <ul><li>Documentation on how to use the initialize a package.</li>
 </ul></div>
 <div class="section level4">
-<h4 id="bug-fixes-0-1-0-9142">Bug fixes<a class="anchor" aria-label="anchor" href="#bug-fixes-0-1-0-9142"></a></h4>
+<h4 id="bug-fixes-0-1-0-9143">Bug fixes<a class="anchor" aria-label="anchor" href="#bug-fixes-0-1-0-9143"></a></h4>
 <ul><li>None.</li>
 </ul></div>
 </div>
diff --git a/main/pkgdown.yml b/main/pkgdown.yml
index 5e6a3456..534b8f0d 100644
--- a/main/pkgdown.yml
+++ b/main/pkgdown.yml
@@ -3,7 +3,7 @@ pkgdown: 2.0.7
 pkgdown_sha: ~
 articles:
   hello: hello.html
-last_built: 2024-02-22T17:38Z
+last_built: 2024-02-23T15:07Z
 urls:
   reference: https://insightsengineering.github.io/r.pkg.template/reference
   article: https://insightsengineering.github.io/r.pkg.template/articles
diff --git a/main/reference/hello.html b/main/reference/hello.html
index 91309f79..738a8ce6 100644
--- a/main/reference/hello.html
+++ b/main/reference/hello.html
@@ -15,7 +15,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">r.pkg.template</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9142</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9143</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,12 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/r.pkg.template/main">main</a> </div></li>
-<!-- end dropdown for versions -->
       </ul><form class="form-inline my-2 my-lg-0" role="search">
         <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
 
diff --git a/main/reference/index.html b/main/reference/index.html
index fbce8944..87f5bd03 100644
--- a/main/reference/index.html
+++ b/main/reference/index.html
@@ -15,7 +15,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">r.pkg.template</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9142</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9143</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,12 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/r.pkg.template/main">main</a> </div></li>
-<!-- end dropdown for versions -->
       </ul><form class="form-inline my-2 my-lg-0" role="search">
         <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
 
diff --git a/main/reference/plumber_api.html b/main/reference/plumber_api.html
index f35c46fc..21a5315b 100644
--- a/main/reference/plumber_api.html
+++ b/main/reference/plumber_api.html
@@ -17,7 +17,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">r.pkg.template</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9142</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9143</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -37,12 +37,6 @@
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   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
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-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/r.pkg.template/main">main</a> </div></li>
-<!-- end dropdown for versions -->
       </ul><form class="form-inline my-2 my-lg-0" role="search">
         <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
 
diff --git a/main/reference/shiny_app.html b/main/reference/shiny_app.html
index 76236925..6f2f5e91 100644
--- a/main/reference/shiny_app.html
+++ b/main/reference/shiny_app.html
@@ -17,7 +17,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">r.pkg.template</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9142</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9143</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -37,12 +37,6 @@
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-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/r.pkg.template/main">main</a> </div></li>
-<!-- end dropdown for versions -->
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diff --git a/main/search.json b/main/search.json
index 2f053f6d..b240d2b7 100644
--- a/main/search.json
+++ b/main/search.json
@@ -1 +1 @@
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Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement [INSERT CONTACT METHOD]. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. 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Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.1, available https://www.contributor-covenant.org/version/2/1/code_of_conduct.html. Community Impact Guidelines inspired Mozilla’s code conduct enforcement ladder. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. 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Make changes Make sure code passes checks imposed GitHub Actions well documented well tested unit tests sufficiently covering changes introduced Create pull request (PR) pull request description, please link relevant issue (), provide detailed description change, include assumptions. Address review comments, Post approval Merge PR write access. Otherwise, reviewer merge PR behalf. Pat back Congratulations! 🎉 now official contributor project! grateful contribution.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/CONTRIBUTING.html","id":"branch-naming-convention","dir":"","previous_headings":"Pull requests","what":"Branch naming convention","title":"Contribution Guidelines","text":"Suppose changes related current issue current project; please name branch follows: <issue_id>_<short_description>. Please use underscore (_) delimiter word separation. example, 420_fix_ui_bug suitable branch name change resolving UI-related bug reported issue number 420 current project. change affects multiple repositories, please name branches follows: <issue_id>_<issue_repo>_<short description>. example, 69_awesomeproject_fix_spelling_error reference issue 69 reported project awesomeproject aims resolve one spelling errors multiple (likely related) repositories.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/CONTRIBUTING.html","id":"monorepo-and-stageddependencies","dir":"","previous_headings":"Pull requests","what":"monorepo and staged.dependencies","title":"Contribution Guidelines","text":"Sometimes might need change upstream dependent package(s) able submit meaningful change. using staged.dependencies functionality simulate monorepo behavior. dependency configuration already specified project’s staged_dependencies.yaml file. need name feature branches appropriately. exception branch naming convention described . Please refer staged.dependencies package documentation details.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/CONTRIBUTING.html","id":"coding-guidelines","dir":"","previous_headings":"","what":"Coding guidelines","title":"Contribution Guidelines","text":"repository follows unified processes standards adopted maintainers ensure software development carried consistently within teams cohesively across repositories.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/CONTRIBUTING.html","id":"style-guide","dir":"","previous_headings":"Coding guidelines","what":"Style guide","title":"Contribution Guidelines","text":"repository follows standard tidyverse style guide uses lintr lint checks. 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Please report security vulnerabilities public GitHub issues, discussions, pull requests. Instead, please send email vulnerability.management[@]roche.com. Please include much information listed can help us better understand resolve issue: type issue (e.g., buffer overflow, SQL injection, cross-site scripting) Full paths source file(s) related manifestation issue location affected source code (tag/branch/commit direct URL) special configuration required reproduce issue Step--step instructions reproduce issue Proof--concept exploit code (possible) Impact issue, including attacker might exploit issue information help us triage report quickly.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/SECURITY.html","id":"data-security-standards-dss","dir":"","previous_headings":"","what":"Data Security Standards (DSS)","title":"Security Policy","text":"Please make sure reporting issues form bug, feature, pull request, sensitive information PII, PHI, PCI completely removed text attachments, including pictures videos.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"insightsengineering. Author, maintainer.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"insightsengineering (2024). r.pkg.template: R Package Template. 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Git hooks run every commit automatically point solve issues missing semicolons, trailing whitespaces, code formatting spell checks.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/index.html","id":"setting-up-pre-commit-for-r-project","dir":"","previous_headings":"Usage","what":"Setting up pre-commit for R project","title":"R Package Template","text":"Install pre-commit framework. Use official installation guide. Install R package precommit Run use_precommit() function generate example pre-commit configuration called .pre-commit-config.yaml: Install git hooks script: moment , scripts .pre-commit-config.yaml run every git commit command. want run manually without committing can use command pre-commit run ---files. information, please refer official pre-commit documentation. NOTE: Frequently run pre-commit autoupdate update hooks .pre-commit-config.yaml configuration file.","code":"R -e 'install.packages(\"precommit\")' [ ! -f \".pre-commit-config.yaml\" ] && R -e 'precommit::use_precommit()' pre-commit install"},{"path":"https://insightsengineering.github.io/r.pkg.template/main/index.html","id":"example-output-from-pre-commit","dir":"","previous_headings":"Usage","what":"Example output from pre-commit","title":"R Package Template","text":"","code":"$ git add . $ git commit -m \"Add pre-commit configuration\" [INFO] Installing environment for https://github.com/pre-commit/pre-commit-hooks. [INFO] Once installed this environment will be reused. [INFO] This may take a few minutes... style-files..............................................................Passed roxygenize...........................................(no files to check)Skipped use-tidy-description.....................................................Passed spell-check..............................................................Failed - hook id: spell-check - exit code: 1 - files were modified by this hook  The following spelling errors were found:   WORD          FOUND IN commiting     README.md:77 indentify     README.md:49 informatoin   README.md:77 All spelling errors found were copied to inst/WORDLIST assuming they were not spelling errors and will be ignored in the future. Please  review the above list and for each word that is an actual typo:  - fix it in the source code.  - remove it again manually from inst/WORDLIST to make sure it's not    ignored in the future.  Then, try committing again. 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Additional arguments plumber::pr_run()","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/reference/plumber_api.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Personal greeting as a Plumber API — plumber_api","text":"Plumber API showcasing personal greeting feature.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/reference/shiny_app.html","id":null,"dir":"Reference","previous_headings":"","what":"Personal greeting as a Shiny app — shiny_app","title":"Personal greeting as a Shiny app — shiny_app","text":"Greet person appropriately capitalize name Shiny app.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/reference/shiny_app.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Personal greeting as a Shiny app — shiny_app","text":"","code":"shiny_app()"},{"path":"https://insightsengineering.github.io/r.pkg.template/main/reference/shiny_app.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Personal greeting as a Shiny app — shiny_app","text":"Shiny app showcasing personal greeting feature.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/r.pkg.template/main/workflows.html","id":"audityaml","dir":"","previous_headings":"","what":"audit.yaml","title":"What these workflows do?","text":"workflow scans dependencies package vulnerabilities using oysteR. 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Additionally, runs presidio-cli find personally identifiable information (PII) within git repo.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/workflows.html","id":"grammaryaml","dir":"","previous_headings":"","what":"grammar.yaml","title":"What these workflows do?","text":"workflow uses write-good check changed files names matching pattern English sentences corrected. , adds annotations pull request problematic grammar can reviewed.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/workflows.html","id":"licensesyaml","dir":"","previous_headings":"","what":"licenses.yaml","title":"What these workflows do?","text":"workflow generates license report R package’s dependencies continuous compliance.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/workflows.html","id":"linksyaml","dir":"","previous_headings":"","what":"links.yaml","title":"What these workflows do?","text":"workflow checks whether URLs embedded code documentation valid. workflow uses lychee detect broken links. Occasionally, check detect false positives strings look like URLs. remedy, please add false positive .lycheeignore file.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/workflows.html","id":"linteryaml","dir":"","previous_headings":"","what":"linter.yaml","title":"What these workflows do?","text":"workflow lints codebase using super-linter.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/workflows.html","id":"pkgdownyaml","dir":"","previous_headings":"","what":"pkgdown.yaml","title":"What these workflows do?","text":"Documentation R package generated via workflow. workflow uses pkgdown framework generate documentation HTML, HTML pages deployed gh-pages branch. Moreover, additional Versions dropdown generated via GitHub Action, end user can view multiple versions documentation package.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/workflows.html","id":"releaseyaml","dir":"","previous_headings":"","what":"release.yaml","title":"What these workflows do?","text":"workflow creates GitHub release git tag generates changelog based NEWS.md file.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/workflows.html","id":"roxygenyaml","dir":"","previous_headings":"","what":"roxygen.yaml","title":"What these workflows do?","text":"workflow uses roxygen generate .Rd files man/ directory. also checks manuals --date roxygen comments code.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/workflows.html","id":"spellingyaml","dir":"","previous_headings":"","what":"spelling.yaml","title":"What these workflows do?","text":"Spellchecks performed workflow, spelling R package used detect spelling mistakes. inst/WORDLIST file, can add words /acronyms want spell check ignore.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/workflows.html","id":"styleyaml","dir":"","previous_headings":"","what":"style.yaml","title":"What these workflows do?","text":"Code style enforced via styler R package. workflow can configured commit files styling problems automatically, remediating problems.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/workflows.html","id":"test-coverageyaml","dir":"","previous_headings":"","what":"test-coverage.yaml","title":"What these workflows do?","text":"workflow examines test coverage given R package covr. Following , coverage report added PR. Additional feature ability compare code coverage branches, PR can declined coverage decrease following merge. second part workflow runs utilizes covtracer : prepare traceability matrix identify untested behavior verify directly tested functions","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/workflows.html","id":"validationyaml","dir":"","previous_headings":"","what":"validation.yaml","title":"What these workflows do?","text":"workflow generates publishes validation report.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/workflows.html","id":"version-bumpyaml","dir":"","previous_headings":"","what":"version-bump.yaml","title":"What these workflows do?","text":"workflow increases R package version NEWS.md DESCRIPTION files commits change repository.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/workflows.html","id":"versionyaml","dir":"","previous_headings":"","what":"version.yaml","title":"What these workflows do?","text":"workflow checks NEWS.md DESCRPTION files R package version.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/main/workflows.html","id":"adding-unit-test-and-coverage-reports-to-pkgdown-documentation","dir":"","previous_headings":"","what":"Adding unit test and coverage reports to pkgdown documentation","title":"What these workflows do?","text":"order add unit test reports coverage reports documentation generated pkgdown, following steps needed. ’d like custom branding unit test report, add unit-test-report-brand parameter build-check-install.yaml workflow. See examples . Don’t use skip-r-cmd-install parameter unit test report gets generated. build-check-install.yaml test-coverage.yaml depend pkgdown.yaml workflow. ensure race condition pkgdown.yaml workflow overwrites gh-pages branch avoided. can done example : setting needs: [docs] build-check-install.yaml test-coverage.yaml workflows, build-check-install.yaml test-coverage.yaml invoked another workflow pkgdown.yaml, additional dependency can added trigger test-coverage.yaml build-check-install.yaml pkgdown.yaml finished running. See example . _pkgdown.yaml updated following contents ensure links coverage report unit test report appear navbar. 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+[{"path":[]},{"path":"https://insightsengineering.github.io/r.pkg.template/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, caste, color, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. 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Correction","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Use inappropriate language behavior deemed unprofessional unwelcome community. Consequence: private, written warning community leaders, providing clarity around nature violation explanation behavior inappropriate. public apology may requested.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/CODE_OF_CONDUCT.html","id":"id_2-warning","dir":"","previous_headings":"Enforcement Guidelines","what":"2. Warning","title":"Contributor Covenant Code of Conduct","text":"Community Impact: violation single incident series actions. Consequence: warning consequences continued behavior. interaction people involved, including unsolicited interaction enforcing Code Conduct, specified period time. includes avoiding interactions community spaces well external channels like social media. Violating terms may lead temporary permanent ban.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.1, available https://www.contributor-covenant.org/version/2/1/code_of_conduct.html. Community Impact Guidelines inspired Mozilla’s code conduct enforcement ladder. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. 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Please use underscore (_) delimiter word separation. example, 420_fix_ui_bug suitable branch name change resolving UI-related bug reported issue number 420 current project. change affects multiple repositories, please name branches follows: <issue_id>_<issue_repo>_<short description>. example, 69_awesomeproject_fix_spelling_error reference issue 69 reported project awesomeproject aims resolve one spelling errors multiple (likely related) repositories.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/CONTRIBUTING.html","id":"monorepo-and-stageddependencies","dir":"","previous_headings":"Pull requests","what":"monorepo and staged.dependencies","title":"Contribution Guidelines","text":"Sometimes might need change upstream dependent package(s) able submit meaningful change. using staged.dependencies functionality simulate monorepo behavior. dependency configuration already specified project’s staged_dependencies.yaml file. need name feature branches appropriately. exception branch naming convention described . 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Pre-commit hooks already available repository’s .pre-commit-config.yaml file.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/CONTRIBUTING.html","id":"recognition-model","dir":"","previous_headings":"","what":"Recognition model","title":"Contribution Guidelines","text":"mentioned previously, contributions deeply valued appreciated. contribution data available part repository insights, recognize significant contribution hence add contributor package authors list, following rules enforced: Minimum 5% lines code authored* (determined git blame query) top 5 contributors terms number commits lines added lines removed* *Excluding auto-generated code, including limited roxygen comments renv.lock files. package maintainer also reserves right adjust criteria recognize contributions.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/CONTRIBUTING.html","id":"questions","dir":"","previous_headings":"","what":"Questions","title":"Contribution Guidelines","text":"questions regarding contribution guidelines, please contact package/repository maintainer.","code":""},{"path":[]},{"path":[]},{"path":"https://insightsengineering.github.io/r.pkg.template/SECURITY.html","id":"reporting-security-issues","dir":"","previous_headings":"","what":"Reporting Security Issues","title":"Security Policy","text":"believe found security vulnerability repositories organization, please report us coordinated disclosure. Please report security vulnerabilities public GitHub issues, discussions, pull requests. Instead, please send email vulnerability.management[@]roche.com. Please include much information listed can help us better understand resolve issue: type issue (e.g., buffer overflow, SQL injection, cross-site scripting) Full paths source file(s) related manifestation issue location affected source code (tag/branch/commit direct URL) special configuration required reproduce issue Step--step instructions reproduce issue Proof--concept exploit code (possible) Impact issue, including attacker might exploit issue information help us triage report quickly.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/SECURITY.html","id":"data-security-standards-dss","dir":"","previous_headings":"","what":"Data Security Standards (DSS)","title":"Security Policy","text":"Please make sure reporting issues form bug, feature, pull request, sensitive information PII, PHI, PCI completely removed text attachments, including pictures videos.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"insightsengineering. Author, maintainer.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"insightsengineering (2024). r.pkg.template: R Package Template. R package version 0.1.0.9143, https://github.com/insightsengineering/r.pkg.template/.","code":"@Manual{,   title = {r.pkg.template: R Package Template},   author = {{insightsengineering}},   year = {2024},   note = {R package version 0.1.0.9143},   url = {https://github.com/insightsengineering/r.pkg.template/}, }"},{"path":"https://insightsengineering.github.io/r.pkg.template/index.html","id":"rpkgtemplate","dir":"","previous_headings":"","what":"R Package Template","title":"R Package Template","text":"R package template built-GitHub Actions-based CI/CD workflows.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/r.pkg.template/index.html","id":"initialization","dir":"","previous_headings":"Usage","what":"Initialization","title":"R Package Template","text":"initialize repository one two ways:","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/index.html","id":"clone-this-template","dir":"","previous_headings":"Usage > Initialization","what":"Clone this template","title":"R Package Template","text":"Clone repository: Run initializer script:","code":"git clone https://github.com/insightsengineering/r.pkg.template.git cd r.pkg.template ./init.sh"},{"path":"https://insightsengineering.github.io/r.pkg.template/index.html","id":"use-githubs-template-importer","dir":"","previous_headings":"Usage > Initialization","what":"Use GitHub’s template importer","title":"R Package Template","text":"Click generate copy template directly within GitHub. Clone repository account/organization. Run initializer script:","code":"./init.sh"},{"path":"https://insightsengineering.github.io/r.pkg.template/index.html","id":"cicd-configurations","dir":"","previous_headings":"Usage","what":"CI/CD Configurations","title":"R Package Template","text":"CI/CD jobs defined .github/workflows directory form GitHub Action workflows. can modified per requirements, designed implemented follow best practices ensure highest quality standards package. workflows originating repository can repurposed R package GitHub repositories. 👉 information including detailed description screenshots workflows, please refer Workflows documentation.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/index.html","id":"pre-commit","dir":"","previous_headings":"Usage","what":"Pre-commit","title":"R Package Template","text":"repository contains example pre-commit configuration. pre-commit tool uses Git hooks identify resolve simple issues submission code review. Git hooks run every commit automatically point solve issues missing semicolons, trailing whitespaces, code formatting spell checks.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/index.html","id":"setting-up-pre-commit-for-r-project","dir":"","previous_headings":"Usage","what":"Setting up pre-commit for R project","title":"R Package Template","text":"Install pre-commit framework. Use official installation guide. Install R package precommit Run use_precommit() function generate example pre-commit configuration called .pre-commit-config.yaml: Install git hooks script: moment , scripts .pre-commit-config.yaml run every git commit command. want run manually without committing can use command pre-commit run ---files. information, please refer official pre-commit documentation. NOTE: Frequently run pre-commit autoupdate update hooks .pre-commit-config.yaml configuration file.","code":"R -e 'install.packages(\"precommit\")' [ ! -f \".pre-commit-config.yaml\" ] && R -e 'precommit::use_precommit()' pre-commit install"},{"path":"https://insightsengineering.github.io/r.pkg.template/index.html","id":"example-output-from-pre-commit","dir":"","previous_headings":"Usage","what":"Example output from pre-commit","title":"R Package Template","text":"","code":"$ git add . $ git commit -m \"Add pre-commit configuration\" [INFO] Installing environment for https://github.com/pre-commit/pre-commit-hooks. [INFO] Once installed this environment will be reused. [INFO] This may take a few minutes... style-files..............................................................Passed roxygenize...........................................(no files to check)Skipped use-tidy-description.....................................................Passed spell-check..............................................................Failed - hook id: spell-check - exit code: 1 - files were modified by this hook  The following spelling errors were found:   WORD          FOUND IN commiting     README.md:77 indentify     README.md:49 informatoin   README.md:77 All spelling errors found were copied to inst/WORDLIST assuming they were not spelling errors and will be ignored in the future. Please  review the above list and for each word that is an actual typo:  - fix it in the source code.  - remove it again manually from inst/WORDLIST to make sure it's not    ignored in the future.  Then, try committing again. Error: Spell check failed Execution halted  lintr....................................................................Passed readme-rmd-rendered......................................................Passed parsable-R...............................................................Passed no-browser-statement.....................................................Passed deps-in-desc.............................................................Passed prettier.................................................................Failed - hook id: prettier - files were modified by this hook  .pre-commit-config.yaml README.md  Check for added large files..............................................Passed Fix End of Files.........................................................Passed Trim Trailing Whitespace.................................................Failed - hook id: trailing-whitespace - exit code: 1 - files were modified by this hook  Fixing .pre-commit-config.yaml Fixing README.md  Check Yaml...............................................................Passed Don't commit to branch...................................................Passed Mixed line ending........................................................Passed Don't commit common R artifacts......................(no files to check)Skipped"},{"path":[]},{"path":[]},{"path":[]},{"path":[]},{"path":"https://insightsengineering.github.io/r.pkg.template/reference/hello.html","id":null,"dir":"Reference","previous_headings":"","what":"Personal greeting — hello","title":"Personal greeting — hello","text":"Greet person appropriately capitalize name.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/reference/hello.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Personal greeting — hello","text":"","code":"hello(name = \"your name\")"},{"path":"https://insightsengineering.github.io/r.pkg.template/reference/hello.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Personal greeting — hello","text":"name name (character string; e.g. \"john doe\").","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/reference/hello.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Personal greeting — hello","text":"character string, capitalized title case.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/reference/hello.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Personal greeting — hello","text":"","code":"hello(\"james bond\") #> [1] \"Hello, James Bond\""},{"path":"https://insightsengineering.github.io/r.pkg.template/reference/plumber_api.html","id":null,"dir":"Reference","previous_headings":"","what":"Personal greeting as a Plumber API — plumber_api","title":"Personal greeting as a Plumber API — plumber_api","text":"Greet person appropriately capitalize name Plumber API.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/reference/plumber_api.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Personal greeting as a Plumber API — plumber_api","text":"","code":"plumber_api(...)"},{"path":"https://insightsengineering.github.io/r.pkg.template/reference/plumber_api.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Personal greeting as a Plumber API — plumber_api","text":"... Additional arguments plumber::pr_run()","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/reference/plumber_api.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Personal greeting as a Plumber API — plumber_api","text":"Plumber API showcasing personal greeting feature.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/reference/shiny_app.html","id":null,"dir":"Reference","previous_headings":"","what":"Personal greeting as a Shiny app — shiny_app","title":"Personal greeting as a Shiny app — shiny_app","text":"Greet person appropriately capitalize name Shiny app.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/reference/shiny_app.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Personal greeting as a Shiny app — shiny_app","text":"","code":"shiny_app()"},{"path":"https://insightsengineering.github.io/r.pkg.template/reference/shiny_app.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Personal greeting as a Shiny app — shiny_app","text":"Shiny app showcasing personal greeting feature.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/r.pkg.template/workflows.html","id":"audityaml","dir":"","previous_headings":"","what":"audit.yaml","title":"What these workflows do?","text":"workflow scans dependencies package vulnerabilities using oysteR. Dependencies can retrieved either DESCRIPTION file renv.lock file.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/workflows.html","id":"bioccheckyaml","dir":"","previous_headings":"","what":"bioccheck.yaml","title":"What these workflows do?","text":"workflow implements Bioconductor-specific R package checks BiocCheck.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/workflows.html","id":"branch-cleanupyaml","dir":"","previous_headings":"","what":"branch-cleanup.yaml","title":"What these workflows do?","text":"workflow checks (non-default) branches last commit added configurable number days ago. yes, branches deleted.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/workflows.html","id":"build-check-installyaml","dir":"","previous_headings":"","what":"build-check-install.yaml","title":"What these workflows do?","text":"workflow includes following activities: Build R package. Run R CMD check. Publish unit test summary. Catch notes, warnings etc. R CMD check output. Install package.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/workflows.html","id":"gitleaksyaml","dir":"","previous_headings":"","what":"gitleaks.yaml","title":"What these workflows do?","text":"workflow runs gitleaks repo discover secrets might hardcoded.  Additionally, runs presidio-cli find personally identifiable information (PII) within git repo.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/workflows.html","id":"grammaryaml","dir":"","previous_headings":"","what":"grammar.yaml","title":"What these workflows do?","text":"workflow uses write-good check changed files names matching pattern English sentences corrected. , adds annotations pull request problematic grammar can reviewed.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/workflows.html","id":"licensesyaml","dir":"","previous_headings":"","what":"licenses.yaml","title":"What these workflows do?","text":"workflow generates license report R package’s dependencies continuous compliance.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/workflows.html","id":"linksyaml","dir":"","previous_headings":"","what":"links.yaml","title":"What these workflows do?","text":"workflow checks whether URLs embedded code documentation valid. workflow uses lychee detect broken links. Occasionally, check detect false positives strings look like URLs. remedy, please add false positive .lycheeignore file.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/workflows.html","id":"linteryaml","dir":"","previous_headings":"","what":"linter.yaml","title":"What these workflows do?","text":"workflow lints codebase using super-linter.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/workflows.html","id":"pkgdownyaml","dir":"","previous_headings":"","what":"pkgdown.yaml","title":"What these workflows do?","text":"Documentation R package generated via workflow. workflow uses pkgdown framework generate documentation HTML, HTML pages deployed gh-pages branch. Moreover, additional Versions dropdown generated via GitHub Action, end user can view multiple versions documentation package.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/workflows.html","id":"releaseyaml","dir":"","previous_headings":"","what":"release.yaml","title":"What these workflows do?","text":"workflow creates GitHub release git tag generates changelog based NEWS.md file.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/workflows.html","id":"roxygenyaml","dir":"","previous_headings":"","what":"roxygen.yaml","title":"What these workflows do?","text":"workflow uses roxygen generate .Rd files man/ directory. also checks manuals --date roxygen comments code.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/workflows.html","id":"spellingyaml","dir":"","previous_headings":"","what":"spelling.yaml","title":"What these workflows do?","text":"Spellchecks performed workflow, spelling R package used detect spelling mistakes. inst/WORDLIST file, can add words /acronyms want spell check ignore.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/workflows.html","id":"styleyaml","dir":"","previous_headings":"","what":"style.yaml","title":"What these workflows do?","text":"Code style enforced via styler R package. workflow can configured commit files styling problems automatically, remediating problems.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/workflows.html","id":"test-coverageyaml","dir":"","previous_headings":"","what":"test-coverage.yaml","title":"What these workflows do?","text":"workflow examines test coverage given R package covr. Following , coverage report added PR. Additional feature ability compare code coverage branches, PR can declined coverage decrease following merge. second part workflow runs utilizes covtracer : prepare traceability matrix identify untested behavior verify directly tested functions","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/workflows.html","id":"validationyaml","dir":"","previous_headings":"","what":"validation.yaml","title":"What these workflows do?","text":"workflow generates publishes validation report.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/workflows.html","id":"version-bumpyaml","dir":"","previous_headings":"","what":"version-bump.yaml","title":"What these workflows do?","text":"workflow increases R package version NEWS.md DESCRIPTION files commits change repository.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/workflows.html","id":"versionyaml","dir":"","previous_headings":"","what":"version.yaml","title":"What these workflows do?","text":"workflow checks NEWS.md DESCRPTION files R package version.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/workflows.html","id":"adding-unit-test-and-coverage-reports-to-pkgdown-documentation","dir":"","previous_headings":"","what":"Adding unit test and coverage reports to pkgdown documentation","title":"What these workflows do?","text":"order add unit test reports coverage reports documentation generated pkgdown, following steps needed. ’d like custom branding unit test report, add unit-test-report-brand parameter build-check-install.yaml workflow. See examples . Don’t use skip-r-cmd-install parameter unit test report gets generated. build-check-install.yaml test-coverage.yaml depend pkgdown.yaml workflow. ensure race condition pkgdown.yaml workflow overwrites gh-pages branch avoided. can done example : setting needs: [docs] build-check-install.yaml test-coverage.yaml workflows, build-check-install.yaml test-coverage.yaml invoked another workflow pkgdown.yaml, additional dependency can added trigger test-coverage.yaml build-check-install.yaml pkgdown.yaml finished running. See example . _pkgdown.yaml updated following contents ensure links coverage report unit test report appear navbar. Example configuration main branch: Example configuration tags:","code":"navbar:   structure:     left: [intro, reference, articles, tutorials, news, reports]     right: [search, github]   components:     reports:       text: Reports       menu:       - text: Coverage report         href: coverage-report/       - text: Unit test report         href: unit-test-report/     github:       icon: fa-github       href: <url-to-the-repository> name: Check 🛠 on:   push:     branches:       - main   workflow_run:     workflows: [\"Docs 📚\"]     types:       - completed jobs:   r-cmd:     name: R CMD Check 🧬     uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main     with:       unit-test-report-brand: >-         https://github.com/insightsengineering/hex-stickers/raw/main/thumbs/tern.png   coverage:     name: Coverage 📔     uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main name: Release 🎈 on:   push:     tags:       - \"v*\" jobs:   build:     name: Build package 🎁     needs: [release, docs]     uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main     with:       unit-test-report-brand: >-         https://github.com/insightsengineering/hex-stickers/raw/main/thumbs/tern.png   coverage:     name: Coverage 📔     needs: [release, docs]     uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main   docs:     name: Pkgdown Docs 📚     needs: release     uses: insightsengineering/r.pkg.template/.github/workflows/pkgdown.yaml@main"},{"path":[]},{"path":"https://insightsengineering.github.io/r.pkg.template/news/index.html","id":"new-features-0-1-0-9143","dir":"Changelog","previous_headings":"","what":"New features","title":"r.pkg.template 0.1.0.9143","text":"Add initializer script.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/news/index.html","id":"enhancements-0-1-0-9143","dir":"Changelog","previous_headings":"","what":"Enhancements","title":"r.pkg.template 0.1.0.9143","text":"Documentation use initialize package.","code":""},{"path":"https://insightsengineering.github.io/r.pkg.template/news/index.html","id":"bug-fixes-0-1-0-9143","dir":"Changelog","previous_headings":"","what":"Bug fixes","title":"r.pkg.template 0.1.0.9143","text":"None.","code":""}]
diff --git a/main/workflows.html b/main/workflows.html
index 42a339b4..85d752c4 100644
--- a/main/workflows.html
+++ b/main/workflows.html
@@ -15,7 +15,7 @@
     
     <a class="navbar-brand me-2" href="index.html">r.pkg.template</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9142</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.0.9143</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,12 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/r.pkg.template/main">main</a> </div></li>
-<!-- end dropdown for versions -->
       </ul><form class="form-inline my-2 my-lg-0" role="search">
         <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>