TMA / EMA Submission checker

[psychemedia]

Tool to report on "health" of a zipped submission file and, optionally, repair items. Should be complemented by a "sumbission packer" to create a zip file that is well formed.

Issues might include:

• code cells not run;
• code cells run out of order;
• unwanted directories (.ipynb_checkpoints, _MACOSX);
• overlong filenames (break TMA uploader);
• oversized zip files (what is EMA upload system limit?)

[psychemedia]

Add warning around

nb_workflow_tools/tm351_nb_utils.py

Line 384 in cee31a1

if warnings and zip_contents:

to check for _MACOSX in path.

Are there other directories that might be included that are likely to be superfluous?

If there are files that are part of the original distribution, should we provide a way to omit those? eg based on path and file hash (if filepath and the filehash match the distribution, then optionally remove them from the archive and perhaps include small file that indicates they were in the zip and have been removed (and perhaps could be automatically reconstituted?)

[psychemedia]

Currently, we can use eg tm351zipview --warnings MY_SUBMISSION.zip to check the health of the zip file.

Should we perhaps have a tm351ziptidy MY_SUBMISSION.zip to tidy a zip file, perhaps with --dryrun and --inplace options?