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_toc.yml
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# Table of contents
format: jb-book
root: intro
parts:
- caption: General Information
chapters:
- file: GeneralInfo/OH_schedule
- file: GeneralInfo/OH_staff
- file: GeneralInfo/OH_teams
- file: GeneralInfo/datasets
- file: GeneralInfo/graduation_requirements
- caption: Brain Building Blocks
chapters:
- file: Fundamentals/BrainBuildingBlocks/Session1/S1_Intro
sections:
- file: Fundamentals/BrainBuildingBlocks/Session1/S1L1_HelloBrain
- file: Fundamentals/BrainBuildingBlocks/Session1/S1L2_EssentialNeuroanatomy
- file: Fundamentals/BrainBuildingBlocks/Session1/S1L3_FunctionalAreaAndNetwork
- file: Fundamentals/BrainBuildingBlocks/Session1/S1L4_LanguageOfTheBrain
- file: Fundamentals/BrainBuildingBlocks/Session2/S2_Intro
sections:
- file: Fundamentals/BrainBuildingBlocks/Session2/S2L1_IntroBrainScienceToolbox
- file: Fundamentals/BrainBuildingBlocks/Session2/S2L2_EraOfLocalization
- file: Fundamentals/BrainBuildingBlocks/Session2/S2L3_MeasuringImmeasurable
- file: Fundamentals/BrainBuildingBlocks/Session2/S2L4_SneakPeekInsideTheBlackBox
- file: Fundamentals/BrainBuildingBlocks/Session2/S2L5_JourneyIntoTheBrain
- file: Fundamentals/BrainBuildingBlocks/Session3/S3_Intro
sections:
- file: Fundamentals/BrainBuildingBlocks/Session3/S3L1_ConnectingBrainAndBehavior
- file: Fundamentals/BrainBuildingBlocks/Session3/S3L2_SingleNeuronStudies
- file: Fundamentals/BrainBuildingBlocks/Session3/S3L3_EEGStudies
- file: Fundamentals/BrainBuildingBlocks/Session3/S3L4_fMRIStudies
- file: Fundamentals/BrainBuildingBlocks/Session4/S4_Intro
sections:
- file: Fundamentals/BrainBuildingBlocks/Session4/S4L1_SolveTheBrainSignal
- file: Fundamentals/BrainBuildingBlocks/Session4/S4L2_NeuralFiring
- file: Fundamentals/BrainBuildingBlocks/Session4/S4L3_EEGSignal
- file: Fundamentals/BrainBuildingBlocks/Session4/S4L4_fMRISignal
- file: Fundamentals/BrainBuildingBlocks/Session5/S5_Intro
sections:
- file: Fundamentals/BrainBuildingBlocks/Session5/S5L1_TopographicOrganization
- file: Fundamentals/BrainBuildingBlocks/Session5/S5L2_BiologicalNeuron
- file: Fundamentals/BrainBuildingBlocks/Session5/S5L3_NeuralPopulationTuning
- file: Fundamentals/BrainBuildingBlocks/Session5/S5L4_NeuralRepresentation
- file: Fundamentals/BrainBuildingBlocks/Session5/S5L5_HowDoesBrainDecide
- file: Fundamentals/BrainBuildingBlocks/Session6/S6_Intro
sections:
- file: Fundamentals/BrainBuildingBlocks/Session6/S6L1_DataHandlingAndExploration
- file: Fundamentals/BrainBuildingBlocks/Session6/S6L2_GoalsOfModeling
- file: Fundamentals/BrainBuildingBlocks/Session6/S6L3_TypesOfModeling
- file: Fundamentals/BrainBuildingBlocks/Session6/S6L4_ModelEvaluation
- file: Fundamentals/BrainBuildingBlocks/Session7/S7_Intro
sections:
- file: Fundamentals/BrainBuildingBlocks/Session7/S7L1_AIAndBI
- file: Fundamentals/BrainBuildingBlocks/Session7/S7L2_AIAndBI2
- file: Fundamentals/BrainBuildingBlocks/Session7/S7L3_SupervisedDeepLearning
- file: Fundamentals/BrainBuildingBlocks/Session7/S7L4_ReinforcementLearning
- file: Fundamentals/BrainBuildingBlocks/Session7/S7L5_UnsupervisedLearning
- file: Fundamentals/BrainBuildingBlocks/Session7/S7L6_LanguageModels
- file: Fundamentals/BrainBuildingBlocks/Session8/S8_Intro
sections:
- file: Fundamentals/BrainBuildingBlocks/Session8/S8L1_DiagnosisAndMonitoring
- file: Fundamentals/BrainBuildingBlocks/Session8/S8L4_ComputationalNeuropsychiatry
- file: Fundamentals/BrainBuildingBlocks/Session9/S9_Intro
sections:
- file: Fundamentals/BrainBuildingBlocks/Session9/S9L2_BrainComputerInterface
- caption: Prerequisites
chapters:
- file: Fundamentals/Prereqs/BBB2BCC/PrereqBCC
sections:
- file: Fundamentals/Prereqs/BBB2BCC/DataVisualization
- file: Fundamentals/Prereqs/BBB2BCC/DimensionalityReduction
- file: Fundamentals/Prereqs/BBB2BCC/NeuroscienceData
- file: Fundamentals/Prereqs/BBB2BCC/Modeling
- file: Fundamentals/Prereqs/Coding/PrereqCoding
sections:
- file: Fundamentals/Prereqs/Coding/00_basic_python
- file: Fundamentals/Prereqs/Coding/01_numpy
- caption: Welcome to Brain Code Camp! (Week 1)
chapters:
- file: Fundamentals/WelcomeToBrainCodeCamp/Intro
- caption: Prerequisites & Project Idea Exploration (Week 2)
chapters:
- file: Fundamentals/PrereqAndProjectExploration/Intro
- caption: Intro to Modeling and Model Selection (Week 3)
chapters:
- file: Fundamentals/IntroToModeling/modeling_intro
- file: Fundamentals/IntroToModeling/modeling_part1_simple_linear_model
- file: Fundamentals/IntroToModeling/modeling_part2_poly_overfit_regularization
- file: Fundamentals/IntroToModeling/modeling_part3_data_splitting
- file: Fundamentals/IntroToModeling/modeling_outro
- caption: Dimensionality Reduction (Week 4)
chapters:
- file: Fundamentals/DimensionalityReduction/dim_reduct_intro
- file: Fundamentals/DimensionalityReduction/dim_reduct_part1_basics
- file: Fundamentals/DimensionalityReduction/dim_reduct_part2_pca
- file: Fundamentals/DimensionalityReduction/dim_reduct_part3_pca_CDT_images
- file: Fundamentals/DimensionalityReduction/dim_reduct_part4_nonlinear_methods
- file: Fundamentals/DimensionalityReduction/dim_reduct_outro
- caption: Machine Learning (Weeks 5-6)
chapters:
- file: Fundamentals/MachineLearning/ml_part1_intro
title: ML Part 1 (Week 5)
sections:
- file: Fundamentals/MachineLearning/intro_to_machine_learning
- file: Fundamentals/MachineLearning/logistic_regression
- file: Fundamentals/MachineLearning/svm
- file: Fundamentals/MachineLearning/ml_part2_intro
title: ML Part 2 (Week 6)
sections:
- file: Fundamentals/MachineLearning/decision_tree_random_forest
- file: Fundamentals/MachineLearning/knn
- file: Fundamentals/MachineLearning/ml_part2_outro
- caption: Deep Learning (Weeks 7-8)
chapters:
- file: Fundamentals/DeepLearning/deep_learning_intro
title: DL Part 1 (Week 7)
sections:
- file: Fundamentals/DeepLearning/deep_learning_fundamentals
- file: Fundamentals/DeepLearning/intro_pytorch
- file: Fundamentals/DeepLearning/concentration_prediction_with_EEG
- file: Fundamentals/DeepLearning/cnn_cdt_pytorch
- file: Fundamentals/DeepLearning/deep_learning_part2_intro
title: DL Part 2 (Week 8)
sections:
- file: Fundamentals/DeepLearning/object_detection_transformer
- file: Fundamentals/DeepLearning/breast_cancer_segmentation_transformers
- file: Fundamentals/DeepLearning/thai_food_classification_transformers
- file: Fundamentals/DeepLearning/deep_learning_outro
- caption: Signal Processing (Week 9)
chapters:
- file: Fundamentals/SignalProcessing/signal_processing_intro
- file: Fundamentals/SignalProcessing/signal_processing_part1_sampling_averaging
- file: Fundamentals/SignalProcessing/signal_processing_part2_dft
- file: Fundamentals/SignalProcessing/signal_processing_part3_STFT
- file: Fundamentals/SignalProcessing/signal_processing_part4_application
- file: Fundamentals/SignalProcessing/signal_processing_outro
- caption: Applications (Weeks 10-12)
chapters:
- file: Applications/MiniProjects
- caption: Extra Resources
chapters:
- file: ExtraResources/HandsOnDeepLearningWithPytorch
- file: ExtraResources/RecurrentNeuralNetwork
- file: ExtraResources/AttentionTransformer
- file: ExtraResources/GraphNeuralNetwork
- file: ExtraResources/ReinforcementLearning
- file: ExtraResources/Statistics