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not able to upload data #255

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elfunesto opened this issue Oct 1, 2024 · 2 comments
Open

not able to upload data #255

elfunesto opened this issue Oct 1, 2024 · 2 comments
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@colinpmillar
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@elfunesto
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elfunesto commented Oct 1, 2024 •
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Dear all,
I am not able to upload my fish stock assessment data, receiving a message
Screening file ... Client error: (404) Not Found Erreur dans icesSAG::uploadStock(stock_info, fishdata, verbose = TRUE) : There was a problem with the screening utility. Check input data, and try again.
If I run the uploadStock function, it seems to fail at lines 26 27

datsu_resp <- httr::GET(uri) message(httr::http_status(datsu_resp)$message)

with the content of datsu_resp being:

Response [http://datsu.ices.dk/DatsuRest/api/ScreenFile/sg.ices.dk!UserUploads!drouineau_lwiep1oehsh.xml/hilaire.drouineau%40irstea.fr/SAG]
  Date: 2024-10-01 07:15
  Status: 404
  Content-Type: text/html
  Size: 1.25 kB
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"/>
<title>404 - File or directory not found.</title>

I have been able to download the xml drouineau_lwiep1oehsh.xml and test it manually on datsu, and it seems to be correction (no errror, correct number of records). Any clues on what is happening?
Thank you by advance,
Hilaire
@elfunesto
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My package version is icesSAG 1.4.1

@colinpmillar colinpmillar self-assigned this Oct 15, 2024
@colinpmillar
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Hi,

Unfortunately the upload is not working at pressent. I hope to fix this in the next few days.

If you install from github or from r-universe most other things should work as they should...

install.packages("icesSAG", repos = c("https://ices-tools-prod.r-universe.dev", "https://cloud.r-project.org"))

For example:

library(icesSAG)
library(dplyr)
options(icesSAG.use_token = FALSE)
getListStocks(2024) |> filter(Status != "Published")

options(icesSAG.use_token = TRUE)
getListStocks(2024) |> filter(Status != "Published")

The only thing missing is the upload capability... I hope to fix that soon!
I will be pushing to CRAN soon.

Cheers,
Colin

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@colinpmillar @elfunesto