From 4e9bb8105c85a68ed01596054c552399ed7a4027 Mon Sep 17 00:00:00 2001 From: Ric Evans <19216225+ric-evans@users.noreply.github.com> Date: Thu, 20 Oct 2022 12:43:00 -0500 Subject: [PATCH] Move Legacy Files to `deprecated_files/` (#70) Co-authored-by: github-actions --- .github/workflows/tests.yml | 24 +++++++++++++++---- .../CMakeLists.txt | 0 .../cloud_tools}/Dockerfile | 0 .../cloud_tools}/README.md | 0 .../pulsar_terraform_ansible/.gitignore | 0 .../pulsar_terraform_ansible/README.md | 0 .../pulsar_terraform_ansible/ansible.cfg | 0 .../pulsar_terraform_ansible/backend.tf | 0 .../deploy-pulsar.yaml | 0 .../pulsar_terraform_ansible/instances.tf | 0 .../aws_ec2/pulsar_terraform_ansible/keys.tf | 0 .../pulsar_terraform_ansible/network.tf | 0 .../pulsar_terraform_ansible/output.tf | 0 .../pulsar_terraform_ansible/provider.tf | 0 .../pulsar_terraform_ansible/route53.tf | 0 .../secrets/.gitignore | 0 .../pulsar_terraform_ansible/security.tf | 0 .../templates/bookkeeper.conf | 0 .../templates/bookkeeper.service | 0 .../templates/broker.conf | 0 .../templates/client.conf | 0 .../templates/functions_worker.yml | 0 .../pulsar_terraform_ansible/templates/myid | 0 .../templates/proxy.conf | 0 .../templates/pulsar.broker.service | 0 .../templates/pulsar.proxy.service | 0 .../templates/pulsar_env.sh | 0 .../templates/zoo.cfg | 0 .../templates/zookeeper.service | 0 .../pulsar_terraform_ansible/terraform.tfvars | 0 .../pulsar_terraform_ansible/variables.tf | 0 .../pulsar_terraform_ansible/versions.tf | 0 .../aws_ec2/submit_scan_to_ec2.py | 0 .../cloud_tools}/aws_ec2/vm_images/README.md | 0 .../vm_images/generated_files/.empty_dir | 0 .../aws_ec2/vm_images/ubuntu_docker.json | 0 .../vm_images/upload_files/daemon.json | 0 .../upload_files/my-ip6tables-rules.service | 0 .../vm_images/upload_files/my-ip6tables.rules | 0 .../calculate_online_alert_dict.py | 0 .../cloud_tools}/clean_old_frame_objects.py | 0 .../cloud_tools}/collect_pixels.py | 0 .../cloud_tools}/config.py | 0 .../cloud_tools}/entrypoint.py | 0 .../cloud_tools}/extract_i3_file.py | 0 .../cloud_tools}/extract_json_message.py | 0 .../input_files/extract_single_event.py | 0 .../input_files/extract_single_event_l2p2a.py | 0 .../cloud_tools}/onlinel2filter.py.patch | 0 .../cloud_tools}/perform_scan.py | 0 .../cloud_tools}/prepare_frames.py | 0 .../cloud_tools}/pulsar_icetray.py | 0 .../cloud_tools}/requirements.txt | 0 .../scripts/dump_json_from_i3live.py | 0 .../scripts/event_HESE_2017-11-28.json | 0 .../scripts/example_event_json_url.txt | 0 .../extract_single_event.py | 0 ...pixel_number_old_dec_new_dec_definition.py | 0 .../scripts/ignore_first_2_frames.py | 0 .../resources/scripts/split_GCD_and_QP.py | 0 .../resources/scripts/split_gcdqp_and_P.py | 0 .../resources/scripts/strip_GCDQp.py | 0 .../cloud_tools}/save_pixels.py | 0 .../cloud_tools}/scan_pixel.py | 0 .../cloud_tools}/segments.py.patch | 0 .../cloud_tools}/send_scan.py | 0 .../cloud_tools}/submit_all.sh | 0 .../cloud_tools}/submit_all_July2020.sh | 0 .../cloud_tools}/utils.py | 0 .../python}/__init__.py | 0 .../python}/choose_new_pixels_to_scan.py | 0 {python => deprecated_files/python}/config.py | 0 .../python}/create_pickle.py | 0 .../python}/create_plot.py | 0 .../python}/create_plot_zoomed.py | 0 .../python}/extract_cascade_info.py | 0 .../python}/extract_json_message.py | 0 .../python}/get_best_fit_v2.py | 0 .../python}/import_old_style_scan.py | 0 .../python}/import_simulation_p_frame.py | 0 .../python}/load_scan_state.py | 0 .../python}/perform_scan.py | 0 .../python}/prepare_frames.py | 0 .../python}/scan_logic.py | 0 .../python}/scan_pixel_distributed.py | 0 .../python}/slack_tools.py | 0 .../python}/traysegments/__init__.py | 0 .../traysegments/scan_pixel_distributed.py | 0 {python => deprecated_files/python}/utils.py | 0 .../resources}/scripts/EHE_scan_listener.py | 0 .../resources}/scripts/HESE_scan_listener.py | 0 .../resources}/scripts/alert_v2_listener.py | 0 .../scripts/choose_new_pixels_to_scan.py | 0 .../resources}/scripts/create_plot.py | 0 .../resources}/scripts/create_plot_zoomed.py | 0 .../scripts/do_scan_for_json_blob.py | 0 .../scripts/example_event_json_url.txt | 0 .../scripts/extract_cascade_info.py | 0 .../scripts/extract_json_message.py | 0 .../resources}/scripts/get_best_fit.py | 0 .../resources}/scripts/get_best_fit_v2.py | 0 .../scripts/geti3FilesWithGCDdiff.py | 0 .../scripts/import_old_style_scan.py | 0 .../resources}/scripts/load_scan_state.py | 0 .../resources}/scripts/perform_scan.py | 0 .../resources}/scripts/spawn_session.sh | 0 .../resources}/scripts/start_env.sh | 0 requirements.txt | 4 ++-- 108 files changed, 22 insertions(+), 6 deletions(-) rename CMakeLists.txt => deprecated_files/CMakeLists.txt (100%) rename {cloud_tools => deprecated_files/cloud_tools}/Dockerfile (100%) rename {cloud_tools => deprecated_files/cloud_tools}/README.md (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/.gitignore (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/README.md (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/ansible.cfg (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/backend.tf (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/deploy-pulsar.yaml (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/instances.tf (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/keys.tf (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/network.tf (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/output.tf (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/provider.tf (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/route53.tf (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/secrets/.gitignore (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/security.tf (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/templates/bookkeeper.conf (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/templates/bookkeeper.service (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/templates/broker.conf (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/templates/client.conf (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/templates/functions_worker.yml (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/templates/myid (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/templates/proxy.conf (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/templates/pulsar.broker.service (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/templates/pulsar.proxy.service (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/templates/pulsar_env.sh (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/templates/zoo.cfg (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/templates/zookeeper.service (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/terraform.tfvars (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/variables.tf (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/pulsar_terraform_ansible/versions.tf (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/submit_scan_to_ec2.py (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/vm_images/README.md (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/vm_images/generated_files/.empty_dir (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/vm_images/ubuntu_docker.json (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/vm_images/upload_files/daemon.json (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/vm_images/upload_files/my-ip6tables-rules.service (100%) rename {cloud_tools => deprecated_files/cloud_tools}/aws_ec2/vm_images/upload_files/my-ip6tables.rules (100%) rename {cloud_tools => deprecated_files/cloud_tools}/calculate_online_alert_dict.py (100%) rename {cloud_tools => deprecated_files/cloud_tools}/clean_old_frame_objects.py (100%) rename {cloud_tools => deprecated_files/cloud_tools}/collect_pixels.py (100%) rename {cloud_tools => deprecated_files/cloud_tools}/config.py (100%) rename {cloud_tools => deprecated_files/cloud_tools}/entrypoint.py (100%) rename {cloud_tools => deprecated_files/cloud_tools}/extract_i3_file.py (100%) rename {cloud_tools => deprecated_files/cloud_tools}/extract_json_message.py (100%) rename {cloud_tools => deprecated_files/cloud_tools}/input_files/extract_single_event.py (100%) rename {cloud_tools => deprecated_files/cloud_tools}/input_files/extract_single_event_l2p2a.py (100%) rename {cloud_tools => deprecated_files/cloud_tools}/onlinel2filter.py.patch (100%) rename {cloud_tools => deprecated_files/cloud_tools}/perform_scan.py (100%) rename {cloud_tools => deprecated_files/cloud_tools}/prepare_frames.py (100%) rename {cloud_tools => deprecated_files/cloud_tools}/pulsar_icetray.py (100%) rename {cloud_tools => deprecated_files/cloud_tools}/requirements.txt (100%) rename {cloud_tools => deprecated_files/cloud_tools}/resources/scripts/dump_json_from_i3live.py (100%) rename {cloud_tools => deprecated_files/cloud_tools}/resources/scripts/event_HESE_2017-11-28.json (100%) rename {cloud_tools => deprecated_files/cloud_tools}/resources/scripts/example_event_json_url.txt (100%) rename {cloud_tools => deprecated_files/cloud_tools}/resources/scripts/extract_event_from_run/extract_single_event.py (100%) rename {cloud_tools => deprecated_files/cloud_tools}/resources/scripts/fix_pixel_number_old_dec_new_dec_definition.py (100%) rename {cloud_tools => deprecated_files/cloud_tools}/resources/scripts/ignore_first_2_frames.py (100%) rename {cloud_tools => deprecated_files/cloud_tools}/resources/scripts/split_GCD_and_QP.py (100%) rename {cloud_tools => deprecated_files/cloud_tools}/resources/scripts/split_gcdqp_and_P.py (100%) rename {cloud_tools => 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rename {python => deprecated_files/python}/extract_cascade_info.py (100%) rename {python => deprecated_files/python}/extract_json_message.py (100%) rename {python => deprecated_files/python}/get_best_fit_v2.py (100%) rename {python => deprecated_files/python}/import_old_style_scan.py (100%) rename {python => deprecated_files/python}/import_simulation_p_frame.py (100%) rename {python => deprecated_files/python}/load_scan_state.py (100%) rename {python => deprecated_files/python}/perform_scan.py (100%) rename {python => deprecated_files/python}/prepare_frames.py (100%) rename {python => deprecated_files/python}/scan_logic.py (100%) rename {python => deprecated_files/python}/scan_pixel_distributed.py (100%) rename {python => deprecated_files/python}/slack_tools.py (100%) rename {python => deprecated_files/python}/traysegments/__init__.py (100%) rename {python => deprecated_files/python}/traysegments/scan_pixel_distributed.py (100%) rename {python => deprecated_files/python}/utils.py (100%) rename {resources => deprecated_files/resources}/scripts/EHE_scan_listener.py (100%) rename {resources => deprecated_files/resources}/scripts/HESE_scan_listener.py (100%) rename {resources => deprecated_files/resources}/scripts/alert_v2_listener.py (100%) rename {resources => deprecated_files/resources}/scripts/choose_new_pixels_to_scan.py (100%) rename {resources => deprecated_files/resources}/scripts/create_plot.py (100%) rename {resources => deprecated_files/resources}/scripts/create_plot_zoomed.py (100%) rename {resources => deprecated_files/resources}/scripts/do_scan_for_json_blob.py (100%) rename {resources => deprecated_files/resources}/scripts/example_event_json_url.txt (100%) rename {resources => deprecated_files/resources}/scripts/extract_cascade_info.py (100%) rename {resources => deprecated_files/resources}/scripts/extract_json_message.py (100%) rename {resources => deprecated_files/resources}/scripts/get_best_fit.py (100%) rename {resources => deprecated_files/resources}/scripts/get_best_fit_v2.py (100%) rename {resources => deprecated_files/resources}/scripts/geti3FilesWithGCDdiff.py (100%) rename {resources => deprecated_files/resources}/scripts/import_old_style_scan.py (100%) rename {resources => deprecated_files/resources}/scripts/load_scan_state.py (100%) rename {resources => deprecated_files/resources}/scripts/perform_scan.py (100%) rename {resources => deprecated_files/resources}/scripts/spawn_session.sh (100%) rename {resources => deprecated_files/resources}/scripts/start_env.sh (100%) diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml index 90586d297..cdc66b409 100644 --- a/.github/workflows/tests.yml +++ b/.github/workflows/tests.yml @@ -20,6 +20,25 @@ env: jobs: + test-build-images: + runs-on: ubuntu-latest + steps: + - name: Free Disk Space (Ubuntu) + uses: jlumbroso/free-disk-space@main + with: + tool-cache: 'true' + - uses: actions/checkout@v3 + - uses: eWaterCycle/setup-apptainer@v2 + with: + apptainer-version: 1.1.2 + - name: Build Docker Image + run: | + docker build --no-cache -t icecube/skymap_scanner:local . + - name: Build Singularity Image + run: | + sudo singularity build skymap_scanner.sif docker-daemon://icecube/skymap_scanner:local + ls -lh skymap_scanner.sif + test-run-singularity-dummy-reco: runs-on: ubuntu-latest steps: @@ -37,10 +56,7 @@ jobs: run: | set -x ./MQClient/resources/docker-pulsar.sh - - name: Apptainer/Singularity Deps - run: | - sudo apt-get -y install squashfuse fuse2fs - - uses: eWaterCycle/setup-apptainer@v1 + - uses: eWaterCycle/setup-apptainer@v2 with: apptainer-version: 1.1.2 - name: Build Docker Image diff --git a/CMakeLists.txt b/deprecated_files/CMakeLists.txt similarity index 100% rename from CMakeLists.txt rename to deprecated_files/CMakeLists.txt diff --git a/cloud_tools/Dockerfile b/deprecated_files/cloud_tools/Dockerfile similarity index 100% rename from cloud_tools/Dockerfile rename to deprecated_files/cloud_tools/Dockerfile diff --git a/cloud_tools/README.md b/deprecated_files/cloud_tools/README.md similarity index 100% rename from cloud_tools/README.md rename to deprecated_files/cloud_tools/README.md diff --git a/cloud_tools/aws_ec2/pulsar_terraform_ansible/.gitignore b/deprecated_files/cloud_tools/aws_ec2/pulsar_terraform_ansible/.gitignore similarity index 100% rename from cloud_tools/aws_ec2/pulsar_terraform_ansible/.gitignore rename to deprecated_files/cloud_tools/aws_ec2/pulsar_terraform_ansible/.gitignore diff --git a/cloud_tools/aws_ec2/pulsar_terraform_ansible/README.md b/deprecated_files/cloud_tools/aws_ec2/pulsar_terraform_ansible/README.md similarity index 100% rename from cloud_tools/aws_ec2/pulsar_terraform_ansible/README.md rename to deprecated_files/cloud_tools/aws_ec2/pulsar_terraform_ansible/README.md diff --git a/cloud_tools/aws_ec2/pulsar_terraform_ansible/ansible.cfg b/deprecated_files/cloud_tools/aws_ec2/pulsar_terraform_ansible/ansible.cfg similarity index 100% rename from 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100% rename from resources/scripts/perform_scan.py rename to deprecated_files/resources/scripts/perform_scan.py diff --git a/resources/scripts/spawn_session.sh b/deprecated_files/resources/scripts/spawn_session.sh similarity index 100% rename from resources/scripts/spawn_session.sh rename to deprecated_files/resources/scripts/spawn_session.sh diff --git a/resources/scripts/start_env.sh b/deprecated_files/resources/scripts/start_env.sh similarity index 100% rename from resources/scripts/start_env.sh rename to deprecated_files/resources/scripts/start_env.sh diff --git a/requirements.txt b/requirements.txt index efbbaaaf0..3e297cd39 100644 --- a/requirements.txt +++ b/requirements.txt @@ -50,7 +50,7 @@ packaging==21.3 # matplotlib pillow==9.2.0 # via matplotlib -pulsar-client==2.10.1 +pulsar-client==2.10.2 # via wipac-mqclient pyerfa==2.0.0.1 # via astropy @@ -64,7 +64,7 @@ pyyaml==6.0 # via astropy requests==2.28.1 # via wipac-dev-tools -scipy==1.9.2 +scipy==1.9.3 # via healpy six==1.16.0 # via