diff --git a/.cruft.json b/.cruft.json new file mode 100644 index 0000000..22961fd --- /dev/null +++ b/.cruft.json @@ -0,0 +1,24 @@ +{ + "template": "https://github.com/monarch-initiative/monarch-project-template", + "commit": "9d4f915d4a4cd1a9d8206506db1e261bc397de9c", + "checkout": null, + "context": { + "cookiecutter": { + "project_name": "OptimGPT", + "github_org_name": "hrshdhgd", + "__project_slug": "optimgpt", + "project_description": "A language agnostic code optimizer.", + "min_python_version": "3.9", + "file_name": "main", + "greeting_recipient": "World", + "full_name": "Harshad Hegde", + "email": "hhegde@lbl.gov", + "__author": "Harshad Hegde ", + "license": "MIT", + "github_token_for_doc_deployment": "GH_TOKEN", + "github_token_for_pypi_deployment": "PYPI_TOKEN", + "_template": "https://github.com/monarch-initiative/monarch-project-template" + } + }, + "directory": null +} diff --git a/.github/workflows/deploy-docs.yml b/.github/workflows/deploy-docs.yml new file mode 100644 index 0000000..4ecd4e3 --- /dev/null +++ b/.github/workflows/deploy-docs.yml @@ -0,0 +1,43 @@ +name: Auto-deployment of Documentation +on: + push: + branches: [ main ] +jobs: + build-docs: + runs-on: ubuntu-latest + steps: + - name: Checkout + uses: actions/checkout@v3.0.2 + with: + fetch-depth: 0 # otherwise, you will failed to push refs to dest repo + + - name: Set up Python 3. + uses: actions/setup-python@v3 + with: + python-version: 3.9 + + - name: Install Poetry. + uses: snok/install-poetry@v1.3.1 + + - name: Install dependencies. + run: | + poetry install --with docs + + - name: Build documentation. + run: | + echo ${{ secrets.GH_TOKEN }} >> src/optimgpt/token.txt + mkdir gh-pages + touch gh-pages/.nojekyll + cd docs/ + poetry run sphinx-apidoc -o . ../src/optimgpt/ --ext-autodoc -f + poetry run sphinx-build -b html . _build + cp -r _build/* ../gh-pages/ + + - name: Deploy documentation. + if: ${{ github.event_name == 'push' }} + uses: JamesIves/github-pages-deploy-action@v4.4.1 + with: + branch: gh-pages + force: true + folder: gh-pages + token: ${{ secrets.GH_TOKEN }} diff --git a/.github/workflows/pypi-publish.yml b/.github/workflows/pypi-publish.yml new file mode 100644 index 0000000..c2c1d5e --- /dev/null +++ b/.github/workflows/pypi-publish.yml @@ -0,0 +1,34 @@ +name: Publish Python Package + +on: + workflow_dispatch: + release: + types: [created] + +jobs: + build-n-publish: + name: Build and publish Python 🐍 distributions 📦 to PyPI + runs-on: ubuntu-latest + + steps: + - uses: actions/checkout@v3.0.2 + + - name: Set up Python + uses: actions/setup-python@v3.1.2 + with: + python-version: 3.9 + + - name: Install Poetry + run: pip install poetry poetry-dynamic-versioning + + - name: Install dependencies + run: poetry install --no-interaction + + - name: Build source and wheel archives + run: poetry build + + - name: Publish distribution 📦 to PyPI + uses: pypa/gh-action-pypi-publish@v1.5.0 + with: + user: __token__ + password: ${{ secrets.PYPI_TOKEN }} diff --git a/.github/workflows/qc.yml b/.github/workflows/qc.yml new file mode 100644 index 0000000..c553ae8 --- /dev/null +++ b/.github/workflows/qc.yml @@ -0,0 +1,36 @@ +name: OptimGPT QC + +on: + push: + branches: [ main ] + pull_request: + branches: [ main ] + +jobs: + build: + runs-on: ubuntu-latest + strategy: + matrix: + python-version: [ "3.8", "3.11" ] + + steps: + - uses: actions/checkout@v3.0.2 + + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v3 + with: + python-version: ${{ matrix.python-version }} + + - name: Install Poetry + uses: snok/install-poetry@v1.3.1 + - name: Install dependencies + run: poetry install --no-interaction + + - name: Check common spelling errors + run: poetry run tox -e codespell + + - name: Check code quality with flake8 + run: poetry run tox -e lint + + - name: Test with pytest and generate coverage file + run: poetry run tox -e py diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..b6e4761 --- /dev/null +++ b/.gitignore @@ -0,0 +1,129 @@ +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# C extensions +*.so + +# Distribution / packaging +.Python +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +wheels/ +pip-wheel-metadata/ +share/python-wheels/ +*.egg-info/ +.installed.cfg +*.egg +MANIFEST + +# PyInstaller +# Usually these files are written by a python script from a template +# before PyInstaller builds the exe, so as to inject date/other infos into it. +*.manifest +*.spec + +# Installer logs +pip-log.txt +pip-delete-this-directory.txt + +# Unit test / coverage reports +htmlcov/ +.tox/ +.nox/ +.coverage +.coverage.* +.cache +nosetests.xml +coverage.xml +*.cover +*.py,cover +.hypothesis/ +.pytest_cache/ + +# Translations +*.mo +*.pot + +# Django stuff: +*.log +local_settings.py +db.sqlite3 +db.sqlite3-journal + +# Flask stuff: +instance/ +.webassets-cache + +# Scrapy stuff: +.scrapy + +# Sphinx documentation +docs/_build/ + +# PyBuilder +target/ + +# Jupyter Notebook +.ipynb_checkpoints + +# IPython +profile_default/ +ipython_config.py + +# pyenv +.python-version + +# pipenv +# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. +# However, in case of collaboration, if having platform-specific dependencies or dependencies +# having no cross-platform support, pipenv may install dependencies that don't work, or not +# install all needed dependencies. +#Pipfile.lock + +# PEP 582; used by e.g. github.com/David-OConnor/pyflow +__pypackages__/ + +# Celery stuff +celerybeat-schedule +celerybeat.pid + +# SageMath parsed files +*.sage.py + +# Environments +.env +.venv +env/ +venv/ +ENV/ +env.bak/ +venv.bak/ + +# Spyder project settings +.spyderproject +.spyproject + +# Rope project settings +.ropeproject + +# mkdocs documentation +/site + +# mypy +.mypy_cache/ +.dmypy.json +dmypy.json + +# Pyre type checker +.pyre/ diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000..b2e58a4 --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,25 @@ +default_language_version: + python: python3 +repos: +- repo: https://github.com/pre-commit/pre-commit-hooks + rev: v4.4.0 + hooks: + - id: end-of-file-fixer + - id: check-yaml + - id: check-toml + - id: trailing-whitespace +- repo: https://github.com/psf/black + rev: 23.7.0 + hooks: + - id: black +- repo: https://github.com/astral-sh/ruff-pre-commit + rev: v0.0.278 + hooks: + - id: ruff + args: [--fix, --exit-non-zero-on-fix] +- repo: https://github.com/codespell-project/codespell + rev: v2.2.4 + hooks: + - id: codespell + additional_dependencies: + - tomli diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md new file mode 100644 index 0000000..b2bcaf9 --- /dev/null +++ b/CONTRIBUTING.md @@ -0,0 +1,52 @@ +# Contribution Guidelines + +When contributing to this repository, please first discuss the changes you wish to make via an issue, email, or any other method, with the owners of this repository before issuing a pull request. + +## How to contribute + +### Reporting bugs or making feature requests + +To report a bug or suggest a new feature, please go to the [hrshdhgd/OptimGPT issue tracker](https://github.com/hrshdhgd/OptimGPT/issues), as we are +consolidating issues there. + +Please supply enough details to the developers to enable them to verify and troubleshoot your issue: + +* Provide a clear and descriptive title as well as a concise summary of the issue to identify the problem. +* Describe the exact steps which reproduce the problem in as many details as possible. +* Describe the behavior you observed after following the steps and point out what exactly is the problem with that behavior. +* Explain which behavior you expected to see instead and why. +* Provide screenshots of the expected or actual behaviour where applicable. + + +### The development lifecycle + +1. Create a bug fix or feature development branch, based off the `main` branch of the upstream repo, and not your fork. Name the branch appropriately, briefly summarizing the bug fix or feature request. If none come to mind, you can include the issue number in the branch name. Some examples of branch names are, `bugfix/breaking-pipfile-error` or `feature/add-click-cli-layer`, or `bugfix/issue-414` +2. Make sure your development branch has all the latest commits from the `main` branch. +3. After completing work and testing locally, push the code to the appropriate branch on your fork. +4. Create a pull request from the bug/feature branch of your fork to the `main` branch of the upstream repository. + +Note: All the development must be done on a branch on your fork. + +ALSO NOTE: github.com lets you create a pull request from the main branch, automating the steps above. + +> A code review (which happens with both the contributor and the reviewer present) is required for contributing. + +### How to write a great issue + +Please review GitHub's overview article, +["Tracking Your Work with Issues"][about-issues]. + + + +### How to create a great pull/merge request + +Please review GitHub's article, ["About Pull Requests"][about-pulls], +and make your changes on a [new branch][about-branches]. + +[about-branches]: https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/about-branches +[about-issues]: https://docs.github.com/en/issues/tracking-your-work-with-issues/about-issues +[about-pulls]: https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/about-pull-requests +[issues]: https://github.com/hrshdhgd/OptimGPT/issues/ +[pulls]: https://github.com/hrshdhgd/OptimGPT/pulls/ + +We recommend also reading [GitHub Pull Requests: 10 Tips to Know](https://blog.mergify.com/github-pull-requests-10-tips-to-know/) diff --git a/LICENSE b/LICENSE new file mode 100644 index 0000000..293ccff --- /dev/null +++ b/LICENSE @@ -0,0 +1,22 @@ + +The MIT License (MIT) + +Copyright (c) 2024 Monarch Initiative + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in +all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +THE SOFTWARE. diff --git a/README.md b/README.md new file mode 100644 index 0000000..cbbc01d --- /dev/null +++ b/README.md @@ -0,0 +1,7 @@ +# OptimGPT + +A language agnostic code optimizer. + +# Acknowledgements + +This [cookiecutter](https://cookiecutter.readthedocs.io/en/stable/README.html) project was developed from the [monarch-project-template](https://github.com/monarch-initiative/monarch-project-template) template and will be kept up-to-date using [cruft](https://cruft.github.io/cruft/). diff --git a/docs/Makefile b/docs/Makefile new file mode 100644 index 0000000..d0c3cbf --- /dev/null +++ b/docs/Makefile @@ -0,0 +1,20 @@ +# Minimal makefile for Sphinx documentation +# + +# You can set these variables from the command line, and also +# from the environment for the first two. +SPHINXOPTS ?= +SPHINXBUILD ?= sphinx-build +SOURCEDIR = source +BUILDDIR = build + +# Put it first so that "make" without argument is like "make help". +help: + @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) + +.PHONY: help Makefile + +# Catch-all target: route all unknown targets to Sphinx using the new +# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). +%: Makefile + @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) diff --git a/docs/conf.py b/docs/conf.py new file mode 100644 index 0000000..813a8f5 --- /dev/null +++ b/docs/conf.py @@ -0,0 +1,60 @@ +"""Configuration file for the Sphinx documentation builder.""" +# For the full list of built-in configuration values, see the documentation: +# https://www.sphinx-doc.org/en/master/usage/configuration.html + +import os +from datetime import date + +from optimgpt import __version__ + +# -- Project information ----------------------------------------------------- +# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information + +project = "OptimGPT" +copyright = f"{date.today().year}, Harshad Hegde " +author = "Harshad Hegde " +release = __version__ + +# -- General configuration --------------------------------------------------- +# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration + +extensions = [ + "sphinx.ext.autodoc", + "sphinx.ext.githubpages", + "sphinx_rtd_theme", + "sphinx_click", + "sphinx_autodoc_typehints", + "myst_parser", +] + +# generate autosummary pages +autosummary_generate = True + +# The master toctree document. +master_doc = "index" + +# The language for content autogenerated by Sphinx. Refer to documentation +# for a list of supported languages. +# +# This is also used if you do content translation via gettext catalogs. +# Usually you set "language" from the command line for these cases. +language = "en" + +# List of patterns, relative to source directory, that match files and +# directories to ignore when looking for source files. +# This pattern also affects html_static_path and html_extra_path. +exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"] + +templates_path = ["_templates"] + +# -- Options for HTML output ------------------------------------------------- +# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output + +html_theme = "sphinx_rtd_theme" +html_static_path = ["_static"] + +# The name of an image file (relative to this directory) to place at the top +# of the sidebar. +# +if os.path.exists("logo.png"): + html_logo = "logo.png" diff --git a/docs/index.rst b/docs/index.rst new file mode 100644 index 0000000..ec85748 --- /dev/null +++ b/docs/index.rst @@ -0,0 +1,20 @@ +.. OptimGPT documentation master file, created by + sphinx-quickstart on Fri Aug 12 08:35:01 2022. + You can adapt this file completely to your liking, but it should at least + contain the root `toctree` directive. + +Welcome to OptimGPT's documentation! +========================================================= + +.. toctree:: + :maxdepth: 2 + :caption: Contents: + + modules + +Indices and tables +================== + +* :ref:`genindex` +* :ref:`modindex` +* :ref:`search` diff --git a/docs/make.bat b/docs/make.bat new file mode 100644 index 0000000..747ffb7 --- /dev/null +++ b/docs/make.bat @@ -0,0 +1,35 @@ +@ECHO OFF + +pushd %~dp0 + +REM Command file for Sphinx documentation + +if "%SPHINXBUILD%" == "" ( + set SPHINXBUILD=sphinx-build +) +set SOURCEDIR=source +set BUILDDIR=build + +%SPHINXBUILD% >NUL 2>NUL +if errorlevel 9009 ( + echo. + echo.The 'sphinx-build' command was not found. Make sure you have Sphinx + echo.installed, then set the SPHINXBUILD environment variable to point + echo.to the full path of the 'sphinx-build' executable. Alternatively you + echo.may add the Sphinx directory to PATH. + echo. + echo.If you don't have Sphinx installed, grab it from + echo.https://www.sphinx-doc.org/ + exit /b 1 +) + +if "%1" == "" goto help + +%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% +goto end + +:help +%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% + +:end +popd diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..49a767f --- /dev/null +++ b/poetry.lock @@ -0,0 +1,2052 @@ +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. + +[[package]] +name = "aiohttp" +version = "3.9.3" +description = "Async http client/server framework (asyncio)" +optional = false +python-versions = ">=3.8" +files = [ + {file = "aiohttp-3.9.3-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:939677b61f9d72a4fa2a042a5eee2a99a24001a67c13da113b2e30396567db54"}, + {file = "aiohttp-3.9.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = 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+[tool.poetry.group.dev.dependencies] +pytest = {version = ">=7.1.2"} +tox = {version = ">=3.25.1"} +pre-commit = {version = ">=3.3.3"} + +[tool.poetry.group.docs] +optional = true + +[tool.poetry.group.docs.dependencies] +sphinx = {version = ">=6.1.3"} +sphinx-rtd-theme = {version = ">=1.0.0"} +sphinx-autodoc-typehints = {version = ">=1.2.0"} +sphinx-click = {version = ">=4.3.0"} +myst-parser = {version = ">=0.18.1"} + +[tool.poetry.scripts] +OptimGPT = "optimgpt.cli:main" + +[tool.poetry-dynamic-versioning] +enable = true +vcs = "git" +style = "pep440" + +[tool.black] +line-length = 120 +target-version = ["py38", "py39", "py310"] + +[tool.ruff] +extend-ignore = [ + "D211", # `no-blank-line-before-class` + "D212", # `multi-line-summary-first-line` + "D203", # `blank-line-before-docstring` + ] +line-length = 120 + +# Allow autofix for all enabled rules (when `--fix`) is provided. +fixable = ["ALL"] + +# Select or ignore from https://beta.ruff.rs/docs/rules/ +select = [ + "B", # bugbear + "D", # pydocstyle + "E", # pycodestyle errors + "F", # Pyflakes + "I", # isort + "S", # flake8-bandit + "W", # Warning +] + +unfixable = [] +target-version = "py310" + +[tool.ruff.mccabe] +# Unlike Flake8, default to a complexity level of 10. +max-complexity = 10 + +[tool.codespell] +skip = "*.po,*.ts,.git,pyproject.toml" +count = "" +quiet-level = 3 +# ignore-words-list = "" + +[build-system] +requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning"] +build-backend = "poetry_dynamic_versioning.backend" diff --git a/src/optimgpt/__init__.py b/src/optimgpt/__init__.py new file mode 100644 index 0000000..530d070 --- /dev/null +++ b/src/optimgpt/__init__.py @@ -0,0 +1,9 @@ +"""OptimGPT package.""" + +import importlib_metadata + +try: + __version__ = importlib_metadata.version(__name__) +except importlib_metadata.PackageNotFoundError: + # package is not installed + __version__ = "0.0.0" # pragma: no cover diff --git a/src/optimgpt/cli.py b/src/optimgpt/cli.py new file mode 100644 index 0000000..0a89424 --- /dev/null +++ b/src/optimgpt/cli.py @@ -0,0 +1,45 @@ +"""Command line interface for OptimGPT.""" + +import logging + +import click + +from optimgpt import __version__ +from optimgpt.main import demo + +__all__ = [ + "main", +] + +logger = logging.getLogger(__name__) + + +@click.group() +@click.option("-v", "--verbose", count=True) +@click.option("-q", "--quiet") +@click.version_option(__version__) +def main(verbose: int, quiet: bool): + """ + CLI for OptimGPT. + + :param verbose: Verbosity while running. + :param quiet: Boolean to be quiet or verbose. + """ + if verbose >= 2: + logger.setLevel(level=logging.DEBUG) + elif verbose == 1: + logger.setLevel(level=logging.INFO) + else: + logger.setLevel(level=logging.WARNING) + if quiet: + logger.setLevel(level=logging.ERROR) + + +@main.command() +def run(): + """Run the OptimGPT's demo command.""" + demo() + + +if __name__ == "__main__": + main() diff --git a/src/optimgpt/main.py b/src/optimgpt/main.py new file mode 100644 index 0000000..5a05fe2 --- /dev/null +++ b/src/optimgpt/main.py @@ -0,0 +1,10 @@ +"""Main python file.""" + + +def demo(): + """Define API.""" + print("Hello, World!") + + +if __name__ == "__main__": + demo() diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 0000000..11e556f --- /dev/null +++ b/tests/__init__.py @@ -0,0 +1 @@ +"""Tests for OptimGPT.""" diff --git a/tests/demo_test.py b/tests/demo_test.py new file mode 100644 index 0000000..8044ae0 --- /dev/null +++ b/tests/demo_test.py @@ -0,0 +1,13 @@ +"""Demo version test.""" + +import unittest + +from optimgpt import __version__ + + +class TestVersion(unittest.TestCase): + """Test version.""" + + def test_version_type(self): + """Demo test.""" + self.assertIsInstance(__version__, str) diff --git a/tests/input/.keep b/tests/input/.keep new file mode 100644 index 0000000..e69de29 diff --git a/tests/output/.keep b/tests/output/.keep new file mode 100644 index 0000000..e69de29 diff --git a/tox.ini b/tox.ini new file mode 100644 index 0000000..285118b --- /dev/null +++ b/tox.ini @@ -0,0 +1,86 @@ +# Tox (http://tox.testrun.org/) is a tool for running tests +# in multiple virtualenvs. This configuration file will run the +# test suite on all supported python versions. To use it, "pip install tox" +# and then run "tox" from this directory. + +[tox] +# To use a PEP 517 build-backend you are required to configure tox to use an isolated_build: +# https://tox.readthedocs.io/en/latest/example/package.html +isolated_build = True +skipsdist = True + +envlist = + # always keep coverage-clean first + coverage-clean + lint-fix + lint + codespell-write + docstr-coverage + py + +[testenv] +allowlist_externals = + poetry +commands = + poetry run pytest {posargs} +description = Run unit tests with pytest. This is a special environment that does not get a name, and + can be referenced with "py". + +[testenv:coverage-clean] +deps = coverage +skip_install = true +commands = coverage erase + +# This is used during development +[testenv:lint-fix] +deps = + black + ruff +skip_install = true +commands = + black src/ tests/ --exclude "/(tests/input|tests/output)/" + ruff --fix src/ tests/ --exclude tests/input --exclude tests/output +description = Run linters. + +# This is used for QC checks. +[testenv:lint] +deps = + black + ruff +skip_install = true +commands = + black --check --diff src/ tests/ --exclude "/(tests/input|tests/output)/" + ruff check src/ tests/ --exclude tests/input --exclude tests/output +description = Run linters. + +[testenv:doclint] +deps = + rstfmt +skip_install = true +commands = + rstfmt docs/source/ +description = Run documentation linters. + +[testenv:codespell] +description = Run spell checker. +skip_install = true +deps = + codespell + tomli # required for getting config from pyproject.toml +commands = codespell src/ tests/ -S tests/input/,tests/output/ + +[testenv:codespell-write] +description = Run spell checker and write corrections. +skip_install = true +deps = + codespell + tomli +commands = codespell src/ tests/ --write-changes -S tests/input/,tests/output/ + +[testenv:docstr-coverage] +skip_install = true +deps = + docstr-coverage +commands = + docstr-coverage src/ tests/ --skip-private --skip-magic --exclude=tests/input/* --exclude=tests/output/* +description = Run the docstr-coverage tool to check documentation coverage.