[shardformer/fix overlap bug] fix overlap bug, add overlap as an option in shardco… #2953
Workflow file for this run
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| name: Build on PR | |
| on: | |
| pull_request: | |
| types: [synchronize, opened, reopened, ready_for_review, closed, edited] | |
| branches: | |
| - "main" | |
| - "develop" | |
| - "feature/**" | |
| paths: | |
| - ".github/workflows/build_on_pr.yml" # run command & env variables change | |
| - "colossalai/**" # source code change | |
| - "!colossalai/**.md" # ignore doc change | |
| - "op_builder/**" # cuda extension change | |
| - "!op_builder/**.md" # ignore doc change | |
| - "requirements/**" # requirements change | |
| - "tests/**" # test change | |
| - "!tests/**.md" # ignore doc change | |
| - "pytest.ini" # test config change | |
| - "setup.py" # install command change | |
| create: | |
| delete: | |
| jobs: | |
| prepare_cache: | |
| name: Prepare testmon cache | |
| if: | | |
| github.event_name == 'create' && | |
| github.event.ref_type == 'branch' && | |
| github.event.repository.full_name == 'hpcaitech/ColossalAI' | |
| runs-on: [self-hosted, gpu] | |
| container: | |
| image: hpcaitech/pytorch-cuda:1.12.0-11.3.0 | |
| options: --rm | |
| timeout-minutes: 5 | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Copy testmon cache | |
| run: | # branch name may contain slash, we need to replace it with space | |
| export REF_BRANCH=$(echo ${{ github.event.ref }} | sed "s/\// /") | |
| if [ -d /github/home/testmon_cache/${MAIN_BRANCH} ]; then | |
| cp -p -r /github/home/testmon_cache/${MAIN_BRANCH} "/github/home/testmon_cache/${REF_BRANCH}" | |
| fi | |
| env: | |
| MAIN_BRANCH: ${{ github.event.master_branch }} | |
| prepare_cache_for_pr: | |
| name: Prepare testmon cache for PR | |
| if: | | |
| github.event_name == 'pull_request' && | |
| (github.event.action == 'opened' || github.event.action == 'reopened' || (github.event.action == 'edited' && github.event.changes.base != null)) && | |
| github.event.pull_request.base.repo.full_name == 'hpcaitech/ColossalAI' | |
| runs-on: [self-hosted, gpu] | |
| container: | |
| image: hpcaitech/pytorch-cuda:1.12.0-11.3.0 | |
| options: --rm | |
| timeout-minutes: 5 | |
| defaults: | |
| run: | |
| shell: bash | |
| concurrency: | |
| group: ${{ github.head_ref }} | |
| cancel-in-progress: false | |
| steps: | |
| - name: Copy testmon cache | |
| run: | # branch name may contain slash, we need to replace it with space | |
| export BASE=$(echo ${{ github.event.pull_request.base.ref }} | sed "s/\// /") | |
| if [ -d "/github/home/testmon_cache/${BASE}" ] && [ ! -z "$(ls -A "/github/home/testmon_cache/${BASE}")" ]; then | |
| mkdir -p /github/home/testmon_cache/_pull/${PR_NUMBER} && cp -p -r "/github/home/testmon_cache/${BASE}"/.testmondata* /github/home/testmon_cache/_pull/${PR_NUMBER} | |
| fi | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| detect: | |
| name: Detect file change | |
| if: | | |
| github.event_name == 'pull_request' && | |
| (github.event.action == 'synchronize' || github.event.action == 'opened' || github.event.action == 'reopened' || github.event.action == 'ready_for_review') && | |
| github.event.pull_request.draft == false && | |
| github.event.pull_request.base.repo.full_name == 'hpcaitech/ColossalAI' | |
| outputs: | |
| changedExtenisonFiles: ${{ steps.find-extension-change.outputs.all_changed_files }} | |
| anyExtensionFileChanged: ${{ steps.find-extension-change.outputs.any_changed }} | |
| changedLibraryFiles: ${{ steps.find-lib-change.outputs.all_changed_files }} | |
| anyLibraryFileChanged: ${{ steps.find-lib-change.outputs.any_changed }} | |
| runs-on: ubuntu-latest | |
| concurrency: | |
| group: ${{ github.head_ref }} | |
| cancel-in-progress: false | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| - name: Locate base commit | |
| id: locate-base-sha | |
| run: | | |
| curBranch=$(git rev-parse --abbrev-ref HEAD) | |
| commonCommit=$(git merge-base origin/main $curBranch) | |
| echo $commonCommit | |
| echo "baseSHA=$commonCommit" >> $GITHUB_OUTPUT | |
| - name: Find the changed extension-related files | |
| id: find-extension-change | |
| uses: tj-actions/changed-files@v35 | |
| with: | |
| base_sha: ${{ steps.locate-base-sha.outputs.baseSHA }} | |
| files: | | |
| op_builder/** | |
| colossalai/kernel/** | |
| setup.py | |
| - name: Find the changed library-related files | |
| id: find-lib-change | |
| uses: tj-actions/changed-files@v35 | |
| with: | |
| base_sha: ${{ steps.locate-base-sha.outputs.baseSHA }} | |
| files: | | |
| **/*.py | |
| **/*.h | |
| **/*.cpp | |
| **/*.cu | |
| **/*.txt | |
| - name: List changed files | |
| run: | | |
| for file in ${{ steps.find-extension-change.outputs.all_changed_files }}; do | |
| echo "$file was changed" | |
| done | |
| for file in ${{ steps.find-lib-change.outputs.all_changed_files }}; do | |
| echo "$file was changed" | |
| done | |
| build: | |
| name: Build and Test Colossal-AI | |
| needs: detect | |
| if: needs.detect.outputs.anyLibraryFileChanged == 'true' | |
| runs-on: [self-hosted, gpu] | |
| container: | |
| image: hpcaitech/pytorch-cuda:1.12.0-11.3.0 | |
| options: --gpus all --rm -v /data/scratch/cifar-10:/data/scratch/cifar-10 | |
| timeout-minutes: 60 | |
| defaults: | |
| run: | |
| shell: bash | |
| concurrency: | |
| group: ${{ github.head_ref }} | |
| cancel-in-progress: false | |
| steps: | |
| - name: Checkout TensorNVMe | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: hpcaitech/TensorNVMe | |
| ssh-key: ${{ secrets.SSH_KEY_FOR_CI }} | |
| path: TensorNVMe | |
| - name: Restore TensorNVMe Cache | |
| run: | | |
| if [ -d /github/home/tensornvme_cache ] && [ ! -z "$(ls -A /github/home/tensornvme_cache/)" ]; then | |
| cp -p -r /github/home/tensornvme_cache/* /__w/ColossalAI/ColossalAI/TensorNVMe | |
| fi | |
| - name: Install TensorNVMe | |
| run: | | |
| cd TensorNVMe | |
| conda install cmake | |
| pip install -r requirements.txt | |
| pip install -v . | |
| - name: Store TensorNVMe Cache | |
| run: | | |
| cd TensorNVMe | |
| cp -p -r ./build /github/home/tensornvme_cache/ | |
| - name: Checkout Colossal-AI | |
| uses: actions/checkout@v2 | |
| with: | |
| ssh-key: ${{ secrets.SSH_KEY_FOR_CI }} | |
| - name: Restore Colossal-AI Cache | |
| if: needs.detect.outputs.anyExtensionFileChanged != 'true' | |
| run: | | |
| # -p flag is required to preserve the file timestamp to avoid ninja rebuild | |
| if [ -d /github/home/cuda_ext_cache ] && [ ! -z "$(ls -A /github/home/cuda_ext_cache/)" ]; then | |
| cp -p -r /github/home/cuda_ext_cache/* /__w/ColossalAI/ColossalAI/ | |
| fi | |
| - name: Install Colossal-AI | |
| run: | | |
| CUDA_EXT=1 pip install -v -e . | |
| pip install -r requirements/requirements-test.txt | |
| - name: Store Colossal-AI Cache | |
| run: | | |
| # -p flag is required to preserve the file timestamp to avoid ninja rebuild | |
| cp -p -r /__w/ColossalAI/ColossalAI/build /github/home/cuda_ext_cache/ | |
| - name: Restore Testmon Cache | |
| run: | | |
| if [ -d /github/home/testmon_cache/_pull/${PR_NUMBER} ] && [ ! -z "$(ls -A /github/home/testmon_cache/_pull/${PR_NUMBER})" ]; then | |
| cp -p -r /github/home/testmon_cache/_pull/${PR_NUMBER}/.testmondata* /__w/ColossalAI/ColossalAI/ | |
| fi | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| - name: Execute Unit Testing | |
| run: | | |
| CURL_CA_BUNDLE="" PYTHONPATH=$PWD pytest -m "not largedist" --testmon --testmon-cov=. --durations=10 tests/ | |
| env: | |
| DATA: /data/scratch/cifar-10 | |
| NCCL_SHM_DISABLE: 1 | |
| LD_LIBRARY_PATH: /github/home/.tensornvme/lib:/usr/local/nvidia/lib:/usr/local/nvidia/lib64 | |
| TESTMON_CORE_PKGS: /__w/ColossalAI/ColossalAI/requirements/requirements.txt,/__w/ColossalAI/ColossalAI/requirements/requirements-test.txt | |
| - name: Store Testmon Cache | |
| run: | | |
| mkdir -p /github/home/testmon_cache/_pull/${PR_NUMBER} | |
| cp -p -r /__w/ColossalAI/ColossalAI/.testmondata* /github/home/testmon_cache/_pull/${PR_NUMBER}/ | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| - name: Collate artifact | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| changedLibraryFiles: ${{ needs.detect.outputs.changedLibraryFiles }} | |
| anyLibraryFileChanged: ${{ needs.detect.outputs.anyLibraryFileChanged }} | |
| changedExtenisonFiles: ${{ needs.detect.outputs.changedExtenisonFiles }} | |
| run: | | |
| mkdir report | |
| echo $PR_NUMBER > ./report/pr_number | |
| # generate coverage.xml if any | |
| if [ "$anyLibraryFileChanged" == "true" ] && [ -e .coverage ]; then | |
| allFiles="" | |
| for file in $changedLibraryFiles; do | |
| if [ "$allFiles" == "" ]; then | |
| allFiles=$file | |
| else | |
| allFiles=$allFiles,$file | |
| fi | |
| done | |
| coverage report --data-file .coverage --include $allFiles > ./coverage.txt | |
| covPercentage=$(tail -n 1 coverage.txt | grep -o '[1-9]*%$') | |
| covNum=${covPercentage::-1} | |
| mv coverage.txt ./report | |
| echo $covNum > ./report/cov_number | |
| else | |
| echo "No coverage report is generated" | |
| fi | |
| - name: Upload test coverage artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: report | |
| path: report/ | |
| store_cache: | |
| name: Store testmon cache for PR | |
| if: | | |
| github.event_name == 'pull_request' && | |
| github.event.action == 'closed' && | |
| github.event.pull_request.base.repo.full_name == 'hpcaitech/ColossalAI' | |
| runs-on: [self-hosted, gpu] | |
| container: | |
| image: hpcaitech/pytorch-cuda:1.12.0-11.3.0 | |
| options: --rm | |
| timeout-minutes: 5 | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Store testmon cache if possible | |
| if: github.event.pull_request.merged == true | |
| run: | # branch name may contain slash, we need to replace it with space | |
| export BASE=$(echo ${{ github.event.pull_request.base.ref }} | sed "s/\// /") | |
| if [ -d /github/home/testmon_cache/_pull/${PR_NUMBER} ] && [ ! -z "$(ls -A /github/home/testmon_cache/_pull/${PR_NUMBER})" ]; then | |
| cp -p -r /github/home/testmon_cache/_pull/${PR_NUMBER}/.testmondata* "/github/home/testmon_cache/${BASE}/" | |
| fi | |
| env: | |
| PR_NUMBER: ${{ github.event.pull_request.number }} | |
| - name: Remove testmon cache | |
| run: | | |
| rm -rf /github/home/testmon_cache/_pull/${PR_NUMBER} | |
| env: | |
| PR_NUMBER: ${{ github.event.pull_request.number }} | |
| remove_cache: | |
| name: Remove testmon cache | |
| if: | | |
| github.event_name == 'delete' && | |
| github.event.ref_type == 'branch' && | |
| github.event.repository.full_name == 'hpcaitech/ColossalAI' | |
| runs-on: [self-hosted, gpu] | |
| container: | |
| image: hpcaitech/pytorch-cuda:1.12.0-11.3.0 | |
| options: --rm | |
| timeout-minutes: 5 | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Remove testmon cache | |
| run: | # branch name may contain slash, we need to replace it with space | |
| export BASE=$(echo ${{ github.event.ref }} | sed "s/\// /") | |
| rm -rf "/github/home/testmon_cache/${BASE}" |