diff --git a/etl/pom.xml b/etl/pom.xml
index b4efa461..54d61ecc 100644
--- a/etl/pom.xml
+++ b/etl/pom.xml
@@ -46,7 +46,7 @@
 		<dependency>
 			<groupId>com.github.samtools</groupId>
 			<artifactId>htsjdk</artifactId>
-			<version>2.19.0</version>
+			<version>3.0.1</version>
 		</dependency>
 	</dependencies>
 	<build>