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modules.json
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{
"name": "nf-core/phaseimpute",
"homePage": "https://github.com/nf-core/phaseimpute",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bcftools/annotate": {
"branch": "master",
"git_sha": "c1a7fa1c038061b344f2a41be71942061ec40d2e",
"installed_by": ["modules"],
"patch": "modules/nf-core/bcftools/annotate/bcftools-annotate.diff"
},
"bcftools/concat": {
"branch": "master",
"git_sha": "33ef773a7ea36e88323902f63662aa53c9b88988",
"installed_by": ["modules"],
"patch": "modules/nf-core/bcftools/concat/bcftools-concat.diff"
},
"bcftools/convert": {
"branch": "master",
"git_sha": "a5ba4d59c2b248c0379b0f8aeb4e7e754566cd1f",
"installed_by": ["modules"]
},
"bcftools/index": {
"branch": "master",
"git_sha": "a5ba4d59c2b248c0379b0f8aeb4e7e754566cd1f",
"installed_by": ["bam_impute_glimpse", "vcf_phase_shapeit5"]
},
"bcftools/merge": {
"branch": "master",
"git_sha": "a5ba4d59c2b248c0379b0f8aeb4e7e754566cd1f",
"installed_by": ["modules"],
"patch": "modules/nf-core/bcftools/merge/bcftools-merge.diff"
},
"bcftools/mpileup": {
"branch": "master",
"git_sha": "a5ba4d59c2b248c0379b0f8aeb4e7e754566cd1f",
"installed_by": ["modules"],
"patch": "modules/nf-core/bcftools/mpileup/bcftools-mpileup.diff"
},
"bcftools/norm": {
"branch": "master",
"git_sha": "33ef773a7ea36e88323902f63662aa53c9b88988",
"installed_by": ["modules"]
},
"bcftools/pluginsplit": {
"branch": "master",
"git_sha": "c5abf7acbb2943bf09f4025cacbbcc2bc2292637",
"installed_by": ["modules"],
"patch": "modules/nf-core/bcftools/pluginsplit/bcftools-pluginsplit.diff"
},
"bcftools/stats": {
"branch": "master",
"git_sha": "a5ba4d59c2b248c0379b0f8aeb4e7e754566cd1f",
"installed_by": ["modules"]
},
"bcftools/view": {
"branch": "master",
"git_sha": "33ef773a7ea36e88323902f63662aa53c9b88988",
"installed_by": ["modules"]
},
"bedtools/makewindows": {
"branch": "master",
"git_sha": "3b248b84694d1939ac4bb33df84bf6233a34d668",
"installed_by": ["vcf_phase_shapeit5"]
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "82024cf6325d2ee194e7f056d841ecad2f6856e9",
"installed_by": ["modules"]
},
"gawk": {
"branch": "master",
"git_sha": "cf3ed075695639b0a0924eb0901146df1996dc08",
"installed_by": ["modules"],
"patch": "modules/nf-core/gawk/gawk.diff"
},
"glimpse/chunk": {
"branch": "master",
"git_sha": "7e56daae390ff896b292ddc70823447683a79936",
"installed_by": ["bam_impute_glimpse"]
},
"glimpse/ligate": {
"branch": "master",
"git_sha": "7e56daae390ff896b292ddc70823447683a79936",
"installed_by": ["bam_impute_glimpse"]
},
"glimpse/phase": {
"branch": "master",
"git_sha": "7e56daae390ff896b292ddc70823447683a79936",
"installed_by": ["bam_impute_glimpse"]
},
"glimpse2/chunk": {
"branch": "master",
"git_sha": "d735292b38270792799d18d3b4948ea4f815b5a7",
"installed_by": ["modules"],
"patch": "modules/nf-core/glimpse2/chunk/glimpse2-chunk.diff"
},
"glimpse2/concordance": {
"branch": "master",
"git_sha": "d735292b38270792799d18d3b4948ea4f815b5a7",
"installed_by": ["modules"]
},
"glimpse2/ligate": {
"branch": "master",
"git_sha": "d735292b38270792799d18d3b4948ea4f815b5a7",
"installed_by": ["modules"]
},
"glimpse2/phase": {
"branch": "master",
"git_sha": "6a5a6e1dedc88826744e8117c1974dcca4829d8f",
"installed_by": ["modules"],
"patch": "modules/nf-core/glimpse2/phase/glimpse2-phase.diff"
},
"glimpse2/splitreference": {
"branch": "master",
"git_sha": "d735292b38270792799d18d3b4948ea4f815b5a7",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "4e5f4687318f24ba944a13609d3ea6ebd890737d",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
"installed_by": ["modules"]
},
"quilt/quilt": {
"branch": "master",
"git_sha": "46265545d61e7f482adf40de941cc9a94e479bbe",
"installed_by": ["modules"],
"patch": "modules/nf-core/quilt/quilt/quilt-quilt.diff"
},
"samtools/coverage": {
"branch": "master",
"git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/coverage/samtools-coverage.diff"
},
"samtools/depth": {
"branch": "master",
"git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/depth/samtools-depth.diff"
},
"samtools/faidx": {
"branch": "master",
"git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
"installed_by": ["modules"]
},
"samtools/index": {
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"git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
"installed_by": ["modules"]
},
"samtools/merge": {
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"git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/merge/samtools-merge.diff"
},
"samtools/reheader": {
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"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/reheader/samtools-reheader.diff"
},
"samtools/view": {
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"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/view/samtools-view.diff"
},
"shapeit5/ligate": {
"branch": "master",
"git_sha": "dcf17cc0ed8fd5ea57e61a13e0147cddb5c1ee30",
"installed_by": ["vcf_phase_shapeit5"]
},
"shapeit5/phasecommon": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["vcf_phase_shapeit5"],
"patch": "modules/nf-core/shapeit5/phasecommon/shapeit5-phasecommon.diff"
},
"stitch": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"],
"patch": "modules/nf-core/stitch/stitch.diff"
},
"tabix/bgzip": {
"branch": "master",
"git_sha": "09d3c8c29b31a2dfd610305b10550f0e1dbcd4a9",
"installed_by": ["modules"]
},
"tabix/tabix": {
"branch": "master",
"git_sha": "9502adb23c0b97ed8e616bbbdfa73b4585aec9a1",
"installed_by": ["modules"]
},
"vcflib/vcffixup": {
"branch": "master",
"git_sha": "072cf562e143252953a1b5c5ed38ec55eaa930c8",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "9d05360da397692321d377b6102d2fb22507c6ef",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "772684d9d66f37b650c8ba5146ac1ee3ecba2acb",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "bbd5a41f4535a8defafe6080e00ea74c45f4f96c",
"installed_by": ["subworkflows"]
}
}
}
}
}
}