diff --git a/datasets/eeg_ds002893s_hed_attention_shift/dataset_description.json b/datasets/eeg_ds002893s_hed_attention_shift/dataset_description.json index 750758cc..c015f089 100644 --- a/datasets/eeg_ds002893s_hed_attention_shift/dataset_description.json +++ b/datasets/eeg_ds002893s_hed_attention_shift/dataset_description.json @@ -1,7 +1,7 @@ { "Name": "Auditory-Visual Shift Study", - "BIDSVersion": "1.7.0", - "HEDVersion": "8.0.0", + "BIDSVersion": "1.9.0", + "HEDVersion": "8.2.0", "License": "CC0", "Authors": [ "Marissa Westerfield (data, curation)", diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/CHANGES b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/CHANGES deleted file mode 100644 index c5166eeb..00000000 --- a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/CHANGES +++ /dev/null @@ -1,6 +0,0 @@ -1.0.0 2021-05-11 - - First release -Revision history for Face Recognition experiment by Wakeman-Henson - -version 1.0 - April 2021 - - Initial release of EEG data in this experiment for HED education purposes diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/README b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/README deleted file mode 100644 index 4b1d4f00..00000000 --- a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/README +++ /dev/null @@ -1,24 +0,0 @@ -**Introduction:** -This dataset consists of the MEEG (sMRI+MEG+EEG) portion of the multi-subject, multi-modal face processing dataset (ds000117). This dataset was originally acquired and shared by Daniel Wakeman and Richard Henson (https://pubmed.ncbi.nlm.nih.gov/25977808/). The data has been repackaged in EEGLAB format and has undergone minimal preprocessing as well as reorganization and annotation of the dataset events. - -**Overview of the experiment:** -Eighteen participants completed two recording sessions spaced three months apart – one session recorded fMRI and the other simultaneously recorded MEG and EEG data. During each session, participants performed the same simple perceptual task, responding to presented photographs of famous, unfamiliar, and scrambled faces by pressing one of two keyboard keys to indicate a subjective yes or no decision as to the relative spatial symmetry of the viewed face. Famous faces were feature-matched to unfamiliar faces; half the faces were female. The two sessions (MEEG, fMRI) had different organizations of event timing and presentation because of technological requirements of the respective imaging modalities. Each individual face was presented twice during the session. For half of the presented faces, the second presentation followed immediately after the first. For the other half, the second presentation was delayed by 5-15 face presentations. - -**Preprocessing:** -The preprocessing, which was performed using the `wh_extracteeg_BIDS.m` located in the code directory, includes the following steps: -* Ignore MRI data except for sMRI. -* Extract EEG channels out of the MEG/EEG fif data -* Add fiducials -* Rename EOG and EKG channels -* Extract events from event channel -* Remove spurious events 5, 6, 7, 13, 14, 15, 17, 18 and 19 -* Remove spurious event 24 for subject 3 run 4 -* Rename events taking into account button assigned to each subject -* Correct event latencies (events have a shift of 34 ms) -* Resample data to 250 Hz (this step is performed because this dataset is used in a tutorial for EEGLAB and needs to be lightweight) -* Remove event fields `urevent` and `duration` -* Save as EEGLAB .set format - -**Data curators:** -Ramon Martinez, Dung Truong, Scott Makeig, Arnaud Delorme (UCSD, La Jolla, CA, USA), Kay Robbins (UTSA, San Antonio, TX, USA) - diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/dataset_description.json b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/dataset_description.json deleted file mode 100644 index 00de310a..00000000 --- a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/dataset_description.json +++ /dev/null @@ -1,27 +0,0 @@ -{ - "Name": "Face processing MEEG dataset with HED annotation", - "BIDSVersion": "1.8.0", - "HEDVersion": "8.1.0", - "License": "CC0", - "Authors": [ - "Daniel G. Wakeman", - "Richard N Henson", - "Dung Truong (curation)", - "Kay Robbins (curation)", - "Scott Makeig (curation)", - "Arno Delorme (curation)" - ], - "ReferencesAndLinks": [ - "Wakeman, D., Henson, R. (2015). A multi-subject, multi-modal human neuroimaging dataset. Sci Data 2, 150001. https://doi.org/10.1038/sdata.2015.1", - "Robbins, K., Truong, D., Appelhoff, S., Delorme, A., & Makeig, S. (2021). Capturing the nature of events and event context using Hierarchical Event Descriptors (HED). In press for NeuroImage Special Issue Practice in MEEG. NeuroImage 245 (2021) 118766. Online: https://www.sciencedirect.com/science/article/pii/S1053811921010387.", - "Robbins, K., Truong, D., Jones, A., Callanan, I., & Makeig, S. (2021). Building FAIR functionality: Annotating events in time series data using Hierarchical Event Descriptors (HED). Neuroinformatics Special Issue Building the NeuroCommons. Neuroinformatics https://doi.org/10.1007/s12021-021-09537-4. Online: https://link.springer.com/article/10.1007/s12021-021-09537-4." - ], - "Funding": [ - "Experiment was supported by the UK Medical Research Council (MC_A060_5PR10) and Elekta Ltd.", - "Curation was supported by: NIH R01 EB023297-03, NIH R01 NS047293-l4, NIH R24 MH120037-01, and R01 MH126700-01A1." - ], - "DatasetDOI": "10.18112/openneuro.ds003645.v2.0.2", - "EthicsApprovals": [ - "The study was approved by Cambridge University Psychological Ethics Committee. Written informed consent was obtained from each participant prior to and following each phase of the experiment." - ] -} \ No newline at end of file diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/participants.json b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/participants.json deleted file mode 100644 index 4fbcc432..00000000 --- a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/participants.json +++ /dev/null @@ -1,17 +0,0 @@ -{ - "participant_id": { - "LongName": "Participant identifier", - "Description": "Unique subject identifier" - }, - "gender": { - "Description": "Sex of the subject", - "Levels": { - "M": "male", - "F": "female" - } - }, - "age": { - "Description": "Age of the subject", - "Units": "years" - } -} \ No newline at end of file diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/participants.tsv 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-EEG046 EEG microV -EEG047 EEG microV -EEG048 EEG microV -EEG049 EEG microV -EEG050 EEG microV -EEG051 EEG microV -EEG052 EEG microV -EEG053 EEG microV -EEG054 EEG microV -EEG055 EEG microV -EEG056 EEG microV -EEG057 EEG microV -EEG058 EEG microV -EEG059 EEG microV -EEG060 EEG microV -EEG061 HEOG n/a -EEG062 VEOG n/a -EEG063 MISC n/a -EEG064 MISC n/a -EEG065 EEG microV -EEG066 EEG microV -EEG067 EEG microV -EEG068 EEG microV -EEG069 EEG microV -EEG070 EEG microV -EEG071 EEG microV -EEG072 EEG microV -EEG073 EEG microV -EEG074 EEG microV -STI101 n/a n/a diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-1_eeg.json b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-1_eeg.json deleted file mode 100644 index f57fa2c6..00000000 --- a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-1_eeg.json +++ /dev/null @@ -1,24 +0,0 @@ -{ - "TaskName": "FacePerception", - "TaskDescription": "Subjects viewed stimuli on a screen during six, 7.5 minute runs. The stimuli were photographs of either a famous face (known to most of British or a scrambled face, and appeared for a random duration between 800 and 1,000 ms. Subjects were instructed to fixate centrally throughout the experiment. To ensure attention to each stimulus, participants were asked to press one of two keys with either their left or right index finger (assignment counter-balanced across participants). Their key-press was based on how symmetric they regarded each image: pressing one or the other key depending whether they thought the image was 'more' or 'less symmetric' than average.", - "InstitutionAddress": "15 Chaucer Road, Cambridge, UK", - "InstitutionName": "MRC Cognition & Brain Sciences Unit", - "EEGReference": "nose", - "EEGGround": "left collar bone", - "SamplingFrequency": 250, - "PowerLineFrequency": 50, - "SoftwareFilters": { - "LowPassFilter": { - "cutoff": "350 (Hz)" - } - }, - "EEGPlacementScheme": "extended 10-10% system", - "CapManufacturer": "Easycap", - "EEGChannelCount": 70, - "EOGChannelCount": 2, - "RecordingType": "continuous", - "MiscChannelCount": 309, - "RecordingDuration": 491, - "ECGChannelCount": 0, - "EMGChannelCount": 0 -} \ No newline at end of file diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-1_eeg.set b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-1_eeg.set deleted file mode 100644 index e69de29b..00000000 diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-1_events.tsv b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-1_events.tsv deleted file mode 100644 index 24b41a36..00000000 --- a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-1_events.tsv +++ /dev/null @@ -1,201 +0,0 @@ -onset duration sample event_type face_type rep_status trial rep_lag value stim_file -0.004 n/a 1.0 setup_right_sym n/a n/a n/a n/a 3 n/a -24.2098181818 n/a 6052.4545 show_face_initial unfamiliar_face first_show 1 n/a 13 u032.bmp -25.0352727273 n/a 6258.8182 show_circle n/a n/a 1 n/a 0 circle.bmp -25.158 n/a 6289.5 left_press n/a n/a 1 n/a 256 n/a 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cross.bmp -185.6652727273 n/a 46416.3182 show_face famous_face first_show 52 n/a 5 f020.bmp -186.3670909091 n/a 46591.7727 right_press n/a n/a 52 n/a 4096 n/a -186.6225454545 n/a 46655.6364 show_circle n/a n/a 52 n/a 0 circle.bmp diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-2_channels.tsv b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-2_channels.tsv deleted file mode 100644 index 3020ecb7..00000000 --- a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-2_channels.tsv +++ /dev/null @@ -1,382 +0,0 @@ -name type units -MEG0113 MISC n/a -MEG0112 MISC n/a -MEG0111 MISC n/a -MEG0122 MISC n/a -MEG0123 MISC n/a -MEG0121 MISC n/a -MEG0132 MISC n/a -MEG0133 MISC n/a -MEG0131 MISC n/a -MEG0143 MISC n/a -MEG0142 MISC n/a -MEG0141 MISC n/a -MEG0213 MISC n/a -MEG0212 MISC n/a -MEG0211 MISC n/a -MEG0222 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a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-2_eeg.json +++ /dev/null @@ -1,24 +0,0 @@ -{ - "TaskName": "FacePerception", - "TaskDescription": "Subjects viewed stimuli on a screen during six, 7.5 minute runs. The stimuli were photographs of either a famous face (known to most of British or a scrambled face, and appeared for a random duration between 800 and 1,000 ms. Subjects were instructed to fixate centrally throughout the experiment. To ensure attention to each stimulus, participants were asked to press one of two keys with either their left or right index finger (assignment counter-balanced across participants). Their key-press was based on how symmetric they regarded each image: pressing one or the other key depending whether they thought the image was 'more' or 'less symmetric' than average.", - "InstitutionAddress": "15 Chaucer Road, Cambridge, UK", - "InstitutionName": "MRC Cognition & Brain Sciences Unit", - "EEGReference": "nose", - "EEGGround": "left collar bone", - "SamplingFrequency": 250, - "PowerLineFrequency": 50, - "SoftwareFilters": { - "LowPassFilter": { - "cutoff": "350 (Hz)" - } - }, - "EEGPlacementScheme": "extended 10-10% system", - "CapManufacturer": "Easycap", - "EEGChannelCount": 70, - "EOGChannelCount": 2, - "RecordingType": "continuous", - "MiscChannelCount": 309, - "RecordingDuration": 497, - "ECGChannelCount": 0, - "EMGChannelCount": 0 -} \ No newline at end of file diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-2_eeg.set b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-2_eeg.set deleted file mode 100644 index e69de29b..00000000 diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-2_events.tsv b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-2_events.tsv deleted file mode 100644 index 23478a2c..00000000 --- a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-2_events.tsv +++ /dev/null @@ -1,201 +0,0 @@ -onset duration sample event_type face_type rep_status trial rep_lag value stim_file -0.004 n/a 1.0 setup_right_sym n/a n/a n/a n/a 3 n/a -25.696181818200003 n/a 6424.0455 show_face_initial scrambled_face first_show 1 n/a 17 s096.bmp -26.5616363636 n/a 6640.4091 show_circle n/a n/a 1 n/a 0 circle.bmp -28.2616363636 n/a 7065.4091 show_cross n/a n/a 2 n/a 1 cross.bmp -28.8870909091 n/a 7221.7727 show_face famous_face first_show 2 n/a 5 f148.bmp -29.771636363600003 n/a 7442.9091 right_press n/a n/a 2 n/a 4096 n/a -29.9052727273 n/a 7476.3182 show_circle n/a n/a 2 n/a 0 circle.bmp -31.6052727273 n/a 7901.3182 show_cross n/a n/a 3 n/a 1 cross.bmp -32.1943636364 n/a 8048.5909 show_face famous_face immediate_repeat 3 1 6 f148.bmp -32.7898181818 n/a 8197.4545 right_press n/a n/a 3 n/a 4096 n/a -33.0316363636 n/a 8257.9091 show_circle n/a n/a 3 n/a 0 circle.bmp -34.7316363636 n/a 8682.9091 show_cross n/a n/a 4 n/a 1 cross.bmp -35.1843636364 n/a 8796.0909 show_face scrambled_face first_show 4 n/a 17 s071.bmp -36.0289090909 n/a 9007.2273 show_circle n/a n/a 4 n/a 0 circle.bmp -36.1089090909 n/a 9027.2273 right_press n/a n/a 4 n/a 4096 n/a -37.7289090909 n/a 9432.2273 show_cross n/a n/a 5 n/a 1 cross.bmp -38.3589090909 n/a 9589.7273 show_face scrambled_face immediate_repeat 5 1 18 s071.bmp -38.8270909091 n/a 9706.7727 right_press n/a n/a 5 n/a 4096 n/a -39.3707272727 n/a 9842.6818 show_circle n/a n/a 5 n/a 0 circle.bmp -41.0707272727 n/a 10267.6818 show_cross n/a n/a 6 n/a 1 cross.bmp -41.6498181818 n/a 10412.4545 show_face unfamiliar_face first_show 6 n/a 13 u005.bmp -42.5307272727 n/a 10632.6818 show_circle n/a n/a 6 n/a 0 circle.bmp -44.2307272727 n/a 11057.6818 show_cross n/a n/a 7 n/a 1 cross.bmp -44.723454545500005 n/a 11180.8636 show_face famous_face first_show 7 n/a 5 f119.bmp -45.4770909091 n/a 11369.2727 right_press n/a n/a 7 n/a 4096 n/a -45.608 n/a 11402.0 show_circle n/a n/a 7 n/a 0 circle.bmp -47.308 n/a 11827.0 show_cross n/a n/a 8 n/a 1 cross.bmp -47.7970909091 n/a 11949.2727 show_face famous_face first_show 8 n/a 5 f145.bmp -48.390727272700005 n/a 12097.6818 right_press n/a n/a 8 n/a 4096 n/a -48.778 n/a 12194.5 show_circle n/a n/a 8 n/a 0 circle.bmp -50.478 n/a 12619.5 show_cross n/a n/a 9 n/a 1 cross.bmp -50.9707272727 n/a 12742.6818 show_face scrambled_face delayed_repeat 9 8 19 s096.bmp -51.9816363636 n/a 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b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-3_eeg.json deleted file mode 100644 index 6fce0b7b..00000000 --- a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-3_eeg.json +++ /dev/null @@ -1,24 +0,0 @@ -{ - "TaskName": "FacePerception", - "TaskDescription": "Subjects viewed stimuli on a screen during six, 7.5 minute runs. The stimuli were photographs of either a famous face (known to most of British or a scrambled face, and appeared for a random duration between 800 and 1,000 ms. Subjects were instructed to fixate centrally throughout the experiment. To ensure attention to each stimulus, participants were asked to press one of two keys with either their left or right index finger (assignment counter-balanced across participants). Their key-press was based on how symmetric they regarded each image: pressing one or the other key depending whether they thought the image was 'more' or 'less symmetric' than average.", - "InstitutionAddress": "15 Chaucer Road, Cambridge, UK", - "InstitutionName": "MRC Cognition & Brain Sciences Unit", - "EEGReference": "nose", - "EEGGround": "left collar bone", - "SamplingFrequency": 250, - "PowerLineFrequency": 50, - "SoftwareFilters": { - "LowPassFilter": { - "cutoff": "350 (Hz)" - } - }, - "EEGPlacementScheme": "extended 10-10% system", - "CapManufacturer": "Easycap", - "EEGChannelCount": 70, - "EOGChannelCount": 2, - "RecordingType": "continuous", - "MiscChannelCount": 309, - "RecordingDuration": 505, - "ECGChannelCount": 0, - "EMGChannelCount": 0 -} \ No newline at end of file diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-3_eeg.set b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-3_eeg.set deleted file mode 100644 index e69de29b..00000000 diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-3_events.tsv b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-3_events.tsv deleted file mode 100644 index 4a44d02e..00000000 --- a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-002/eeg/sub-002_task-FacePerception_run-3_events.tsv +++ /dev/null @@ -1,201 +0,0 @@ -onset duration sample event_type face_type rep_status trial rep_lag value stim_file -0.004 n/a 1.0 setup_right_sym n/a n/a n/a n/a 3 n/a -24.5989090909 n/a 6149.7273 show_face_initial unfamiliar_face first_show 1 n/a 13 u097.bmp -25.3198181818 n/a 6329.9545 right_press n/a n/a 1 n/a 4096 n/a -25.4325454545 n/a 6358.1364 show_circle n/a n/a 1 n/a 0 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b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-003/eeg/sub-003_task-FacePerception_run-1_eeg.json deleted file mode 100644 index 16428806..00000000 --- a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-003/eeg/sub-003_task-FacePerception_run-1_eeg.json +++ /dev/null @@ -1,24 +0,0 @@ -{ - "TaskName": "FacePerception", - "TaskDescription": "Subjects viewed stimuli on a screen during six, 7.5 minute runs. The stimuli were photographs of either a famous face (known to most of British or a scrambled face, and appeared for a random duration between 800 and 1,000 ms. Subjects were instructed to fixate centrally throughout the experiment. To ensure attention to each stimulus, participants were asked to press one of two keys with either their left or right index finger (assignment counter-balanced across participants). Their key-press was based on how symmetric they regarded each image: pressing one or the other key depending whether they thought the image was 'more' or 'less symmetric' than average.", - "InstitutionAddress": "15 Chaucer Road, Cambridge, UK", - "InstitutionName": "MRC Cognition & Brain Sciences Unit", - "EEGReference": "nose", - "EEGGround": "left collar bone", - "SamplingFrequency": 250, - "PowerLineFrequency": 50, - "SoftwareFilters": { - "LowPassFilter": { - "cutoff": "350 (Hz)" - } - }, - "EEGPlacementScheme": "extended 10-10% system", - "CapManufacturer": "Easycap", - "EEGChannelCount": 70, - "EOGChannelCount": 2, - "RecordingType": "continuous", - "MiscChannelCount": 309, - "RecordingDuration": 494, - "ECGChannelCount": 0, - "EMGChannelCount": 0 -} \ No newline at end of file diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-003/eeg/sub-003_task-FacePerception_run-1_eeg.set b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-003/eeg/sub-003_task-FacePerception_run-1_eeg.set deleted file mode 100644 index e69de29b..00000000 diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-003/eeg/sub-003_task-FacePerception_run-1_events.tsv b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-003/eeg/sub-003_task-FacePerception_run-1_events.tsv deleted file mode 100644 index 8ed95eba..00000000 --- a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-003/eeg/sub-003_task-FacePerception_run-1_events.tsv +++ /dev/null @@ -1,201 +0,0 @@ -onset duration sample event_type face_type rep_status trial rep_lag value stim_file -0.004 n/a 1.0 setup_right_sym n/a n/a n/a n/a 3 n/a -25.1161818182 n/a 6279.0455 show_face_initial famous_face first_show 1 n/a 5 f074.bmp -25.9789090909 n/a 6494.7273 show_circle n/a n/a 1 n/a 0 circle.bmp -26.0261818182 n/a 6506.5455 left_press n/a n/a 1 n/a 256 n/a 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a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-003/eeg/sub-003_task-FacePerception_run-2_eeg.json +++ /dev/null @@ -1,24 +0,0 @@ -{ - "TaskName": "FacePerception", - "TaskDescription": "Subjects viewed stimuli on a screen during six, 7.5 minute runs. The stimuli were photographs of either a famous face (known to most of British or a scrambled face, and appeared for a random duration between 800 and 1,000 ms. Subjects were instructed to fixate centrally throughout the experiment. To ensure attention to each stimulus, participants were asked to press one of two keys with either their left or right index finger (assignment counter-balanced across participants). Their key-press was based on how symmetric they regarded each image: pressing one or the other key depending whether they thought the image was 'more' or 'less symmetric' than average.", - "InstitutionAddress": "15 Chaucer Road, Cambridge, UK", - "InstitutionName": "MRC Cognition & Brain Sciences Unit", - "EEGReference": "nose", - "EEGGround": "left collar bone", - "SamplingFrequency": 250, - "PowerLineFrequency": 50, - "SoftwareFilters": { - "LowPassFilter": { - "cutoff": "350 (Hz)" - } - }, - "EEGPlacementScheme": "extended 10-10% system", - "CapManufacturer": "Easycap", - "EEGChannelCount": 70, - "EOGChannelCount": 2, - "RecordingType": "continuous", - "MiscChannelCount": 309, - "RecordingDuration": 493, - "ECGChannelCount": 0, - "EMGChannelCount": 0 -} \ No newline at end of file diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-003/eeg/sub-003_task-FacePerception_run-2_eeg.set b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-003/eeg/sub-003_task-FacePerception_run-2_eeg.set deleted file mode 100644 index e69de29b..00000000 diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-003/eeg/sub-003_task-FacePerception_run-2_events.tsv b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-003/eeg/sub-003_task-FacePerception_run-2_events.tsv deleted file mode 100644 index 6979cec6..00000000 --- a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-003/eeg/sub-003_task-FacePerception_run-2_events.tsv +++ /dev/null @@ -1,201 +0,0 @@ -onset duration sample event_type face_type rep_status trial rep_lag value stim_file -0.004 n/a 1.0 setup_right_sym n/a n/a n/a n/a 3 n/a -25.0143636364 n/a 6253.5909 show_face_initial famous_face first_show 1 n/a 5 f108.bmp -25.8598181818 n/a 6464.9545 right_press n/a n/a 1 n/a 4096 n/a -25.9516363636 n/a 6487.9091 show_circle n/a n/a 1 n/a 0 circle.bmp -27.6516363636 n/a 6912.9091 show_cross n/a n/a 2 n/a 1 cross.bmp -28.2552727273 n/a 7063.8182 show_face scrambled_face first_show 2 n/a 17 s141.bmp -28.9170909091 n/a 7229.2727 left_press n/a n/a 2 n/a 256 n/a -29.2725454545 n/a 7318.1364 show_circle n/a n/a 2 n/a 0 circle.bmp -30.9725454545 n/a 7743.1364 show_cross n/a n/a 3 n/a 1 cross.bmp -31.4452727273 n/a 7861.3182 show_face scrambled_face immediate_repeat 3 1 18 s141.bmp -32.1234545455 n/a 8030.8636 left_press n/a n/a 3 n/a 256 n/a -32.3816363636 n/a 8095.4091 show_circle n/a n/a 3 n/a 0 circle.bmp -34.081636363600005 n/a 8520.4091 show_cross n/a n/a 4 n/a 1 cross.bmp -34.569818181799995 n/a 8642.4545 show_face unfamiliar_face first_show 4 n/a 13 u132.bmp -35.3943636364 n/a 8848.5909 right_press n/a n/a 4 n/a 4096 n/a -35.4189090909 n/a 8854.7273 show_circle n/a n/a 4 n/a 0 circle.bmp -37.1189090909 n/a 9279.7273 show_cross n/a n/a 5 n/a 1 cross.bmp -37.7434545455 n/a 9435.8636 show_face unfamiliar_face immediate_repeat 5 1 14 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circle.bmp -49.9470909091 n/a 12486.7727 show_cross n/a n/a 9 n/a 1 cross.bmp -50.438909090900005 n/a 12609.7273 show_face famous_face first_show 9 n/a 5 f102.bmp -51.1325454545 n/a 12783.1364 right_press n/a n/a 9 n/a 4096 n/a -51.2798181818 n/a 12819.9545 show_circle n/a n/a 9 n/a 0 circle.bmp -52.979818181800006 n/a 13244.9545 show_cross n/a n/a 10 n/a 1 cross.bmp -53.5298181818 n/a 13382.4545 show_face famous_face immediate_repeat 10 1 6 f102.bmp -54.0234545455 n/a 13505.8636 right_press n/a n/a 10 n/a 4096 n/a -54.3998181818 n/a 13599.9545 show_circle n/a n/a 10 n/a 0 circle.bmp -56.0998181818 n/a 14024.9545 show_cross n/a n/a 11 n/a 1 cross.bmp -56.6034545455 n/a 14150.8636 show_face famous_face delayed_repeat 11 10 7 f108.bmp -57.2434545455 n/a 14310.8636 right_press n/a n/a 11 n/a 4096 n/a -57.444363636400006 n/a 14361.0909 show_circle n/a n/a 11 n/a 0 circle.bmp -59.1443636364 n/a 14786.0909 show_cross n/a n/a 12 n/a 1 cross.bmp -59.7789090909 n/a 14944.7273 show_face 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a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-003/eeg/sub-003_task-FacePerception_run-3_eeg.json +++ /dev/null @@ -1,24 +0,0 @@ -{ - "TaskName": "FacePerception", - "TaskDescription": "Subjects viewed stimuli on a screen during six, 7.5 minute runs. The stimuli were photographs of either a famous face (known to most of British or a scrambled face, and appeared for a random duration between 800 and 1,000 ms. Subjects were instructed to fixate centrally throughout the experiment. To ensure attention to each stimulus, participants were asked to press one of two keys with either their left or right index finger (assignment counter-balanced across participants). Their key-press was based on how symmetric they regarded each image: pressing one or the other key depending whether they thought the image was 'more' or 'less symmetric' than average.", - "InstitutionAddress": "15 Chaucer Road, Cambridge, UK", - "InstitutionName": "MRC Cognition & Brain Sciences Unit", - "EEGReference": "nose", - "EEGGround": "left collar bone", - "SamplingFrequency": 250, - "PowerLineFrequency": 50, - "SoftwareFilters": { - "LowPassFilter": { - "cutoff": "350 (Hz)" - } - }, - "EEGPlacementScheme": "extended 10-10% system", - "CapManufacturer": "Easycap", - "EEGChannelCount": 70, - "EOGChannelCount": 2, - "RecordingType": "continuous", - "MiscChannelCount": 309, - "RecordingDuration": 492, - "ECGChannelCount": 0, - "EMGChannelCount": 0 -} \ No newline at end of file diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-003/eeg/sub-003_task-FacePerception_run-3_eeg.set b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-003/eeg/sub-003_task-FacePerception_run-3_eeg.set deleted file mode 100644 index e69de29b..00000000 diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-003/eeg/sub-003_task-FacePerception_run-3_events.tsv b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-003/eeg/sub-003_task-FacePerception_run-3_events.tsv deleted file mode 100644 index 82ddc4d9..00000000 --- a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/sub-003/eeg/sub-003_task-FacePerception_run-3_events.tsv +++ /dev/null @@ -1,201 +0,0 @@ -onset duration sample event_type face_type rep_status trial rep_lag value stim_file -0.004 n/a 1.0 setup_right_sym n/a n/a n/a n/a 3 n/a -27.5589090909 n/a 6889.7273 show_face_initial scrambled_face first_show 1 n/a 17 s044.bmp -28.2207272727 n/a 7055.1818 left_press n/a n/a 1 n/a 256 n/a -28.4352727273 n/a 7108.8182 show_circle n/a n/a 1 n/a 0 circle.bmp 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1 cross.bmp -183.0507272727 n/a 45762.6818 show_face unfamiliar_face first_show 50 n/a 13 u086.bmp -183.7498181818 n/a 45937.4545 left_press n/a n/a 50 n/a 256 n/a -183.8734545455 n/a 45968.3636 show_circle n/a n/a 50 n/a 0 circle.bmp diff --git a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/task-FacePerception_events.json b/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/task-FacePerception_events.json deleted file mode 100644 index f24a3f1f..00000000 --- a/datasets/eeg_ds002893s_hed_attention_shift/eeg_ds003645s_hed_tsv/task-FacePerception_events.json +++ /dev/null @@ -1,137 +0,0 @@ -{ - "onset": { - "Description": "Position of event marker in seconds relative to the start.", - "Units": "s" - }, - "duration": { - "Description": "Duration of the event in seconds.", - "Units": "s" - }, - "event_type": { - "LongName": "Event category", - "Description": "The main category of the event.", - "Levels": { - "show_face": "Display a face to mark end of pre-stimulus and start of blink-inhibition.", - "show_face_initial": "Display a face at the beginning of the recording.", - "show_circle": "Display a white circle to mark end of the stimulus and blink inhibition.", - "show_cross": "Display only a white cross to mark start of trial and fixation.", - "left_press": "Experiment participant presses a key with left index finger.", - "right_press": "Experiment participant presses a key with right index finger.", - "setup_left_sym": "Setup for experiment with pressing key with left index finger means a face with above average symmetry.", - "setup_right_sym": "Setup for experiment with pressing key with right index finger means a face with above average symmetry.", - "double_press": "Experiment participant presses both keys ." - }, - "HED": { - "show_face": "Sensory-event, Experimental-stimulus, (Def/Face-image, Onset), (Def/Blink-inhibition-task,Onset),(Def/Cross-only, Offset)", - "show_face_initial": "Sensory-event, Experimental-stimulus, (Def/Face-image, Onset), (Def/Blink-inhibition-task,Onset), (Def/Fixation-task, Onset)", - "show_circle": "Sensory-event, (Intended-effect, Cue), (Def/Circle-only, Onset), (Def/Face-image, Offset), (Def/Blink-inhibition-task, Offset), (Def/Fixation-task, Offset)", - "show_cross": "Sensory-event, (Intended-effect, Cue), (Def/Cross-only, Onset), (Def/Fixation-task, Onset), (Def/Circle-only, Offset)", - "left_press": "Agent-action, Participant-response, Def/Press-left-finger", - "right_press": "Agent-action, Participant-response, Def/Press-right-finger", - "setup_left_sym": "Experiment-structure, (Def/Left-sym-cond, Onset), (Def/Initialize-recording, Onset)", - "setup_right_sym": "Experiment-structure, (Def/Right-sym-cond, Onset), (Def/Initialize-recording, Onset)", - "double_press": "Agent-action, Indeterminate-action, (Press, Keyboard-key)" - } - }, - "face_type": { - "Description": "Factor indicating type of face image being displayed.", - "Levels": { - "famous_face": "A face that should be recognized by the participants.", - "unfamiliar_face": "A face that should not be recognized by the participants.", - "scrambled_face": "A scrambled face image generated by taking face 2D FFT." - }, - "HED": { - "famous_face": "Def/Famous-face-cond", - "unfamiliar_face": "Def/Unfamiliar-face-cond", - "scrambled_face": "Def/Scrambled-face-cond" - } - }, - "rep_status": { - "Description": "Factor indicating whether this image has been already seen.", - "Levels": { - "first_show": "Factor level indicating the first display of this face.", - "immediate_repeat": "Factor level indicating this face was the same as previous one.", - "delayed_repeat": "Factor level indicating face was seen 5 to 15 trials ago." - }, - "HED": { - "first_show": "Def/First-show-cond", - "immediate_repeat": "Def/Immediate-repeat-cond", - "delayed_repeat": "Def/Delayed-repeat-cond" - } - }, - "trial": { - "Description": "Indicates which trial this event belongs to." - }, - "rep_lag": { - "Description": "How face images before this one was the image was previously presented.", - "HED": "(Face, Item-interval/#)" - }, - "stim_file": { - "Description": "Path of the stimulus file in the stimuli directory.", - "HED": "(Image, Pathname/#)" - }, - "hed_def_sensory": { - "Description": "Metadata dictionary for gathering sensory definitions", - "HED": { - "cross_only_def": "(Definition/Cross-only, (Visual-presentation, (Foreground-view, (White, Cross), (Center-of, Computer-screen)), (Background-view, Black), Description/A white fixation cross on a black background in the center of the screen.))", - "face_image_def": "(Definition/Face-image, (Visual-presentation, (Foreground-view, ((Image, Face, Hair), Color/Grayscale), ((White, Cross), (Center-of, Computer-screen))), (Background-view, Black), Description/A happy or neutral face in frontal or three-quarters frontal pose with long hair cropped presented as an achromatic foreground image on a black background with a white fixation cross superposed.))", - "circle_only_def": "(Definition/Circle-only, (Visual-presentation, (Foreground-view, ((White, Circle), (Center-of, Computer-screen))), (Background-view, Black), Description/A white circle on a black background in the center of the screen.))" - } - }, - "hed_def_actions": { - "Description": "Metadata dictionary for gathering participant action definitions", - "HED": { - "press_left_finger_def": "(Definition/Press-left-finger, ((Index-finger, (Left-side-of, Experiment-participant)), (Press, Keyboard-key), Description/The participant presses a key with the left index finger to indicate a face symmetry judgment.))", - "press_right_finger_def": "(Definition/Press-right-finger, ((Index-finger, (Right-side-of, Experiment-participant)), (Press, Keyboard-key), Description/The participant presses a key with the right index finger to indicate a face symmetry evaluation.))" - } - }, - "hed_def_conds": { - "Description": "Metadata dictionary for gathering experimental condition definitions", - "HED": { - "famous_face_cond_def": "(Definition/Famous-face-cond, (Condition-variable/Face-type, (Image, (Face, Famous)), Description/A face that should be recognized by the participants))", - "unfamiliar_face_cond_def": "(Definition/Unfamiliar-face-cond, (Condition-variable/Face-type, (Image, (Face, Unfamiliar)), Description/A face that should not be recognized by the participants.))", - "scrambled_face_cond_def": "(Definition/Scrambled-face-cond, (Condition-variable/Face-type, (Image, (Face, Disordered)), Description/A scrambled face image generated by taking face 2D FFT.))", - "first_show_cond_def": "(Definition/First-show-cond, ((Condition-variable/Repetition-type, (Item-count/1, Face), Item-interval/0), Description/Factor level indicating the first display of this face.))", - "immediate_repeat_cond_def": "(Definition/Immediate-repeat-cond, ((Condition-variable/Repetition-type, (Item-count/2, Face), Item-interval/1), Description/Factor level indicating this face was the same as previous one.))", - "delayed_repeat_cond_def": "(Definition/Delayed-repeat-cond, (Condition-variable/Repetition-type, (Item-count/2, Face), (Item-interval, (Greater-than-or-equal-to, Item-interval/5)), Description/Factor level indicating face was seen 5 to 15 trials ago.))", - "left_sym_cond_def": "(Definition/Left-sym-cond, (Condition-variable/Key-assignment, ((Index-finger, (Left-side-of, Experiment-participant)), (Behavioral-evidence, Symmetrical)), ((Index-finger, (Right-side-of, Experiment-participant)), (Behavioral-evidence, Asymmetrical)), Description/Left index finger key press indicates a face with above average symmetry.))", - "right_sym_cond_def": "(Definition/Right-sym-cond, (Condition-variable/Key-assignment, ((Index-finger, (Right-side-of, Experiment-participant)), (Behavioral-evidence, Symmetrical)), ((Index-finger, (Left-side-of, Experiment-participant)), (Behavioral-evidence, Asymmetrical)), Description/Right index finger key press indicates a face with above average symmetry.))" - } - }, - "hed_def_tasks": { - "Description": "Metadata dictionary for gathering task definitions", - "HED": { - "face_symmetry_evaluation_task_def": "(Definition/Face-symmetry-evaluation-task, (Task, Experiment-participant, (See, Face), (Discriminate, (Face, Symmetrical)), (Press, Keyboard-key), Description/Evaluate degree of image symmetry and respond with key press evaluation.))", - "blink_inhibition_task_def": "(Definition/Blink-inhibition-task, (Task, Experiment-participant, Inhibit-blinks, Description/Do not blink while the face image is displayed.))", - "fixation_task_def": "(Definition/Fixation-task, (Task, Experiment-participant, (Fixate, Cross), Description/Fixate on the cross at the screen center.))" - } - }, - "hed_def_setup": { - "Description": "Metadata dictionary for gathering setup definitions", - "HED": { - "setup_def": "(Definition/Initialize-recording, (Recording))" - } - - }, - "value": { - "Description": "Numerical event marker", - "Levels": { - "x0": "Disappearance of face image and display of the inter-stimulus circle simultaneously", - "x1": "Disappearance of face image and display of the inter-stimulus circle simultaneously", - "x2": "Initial setup with left finger key press indicating above average symmetry", - "x3": "Initial setup with right finger key press indicating above average symmetry", - "x5": "Initial presentation of famous face", - "x6": "Immediate repeated presentation of famous face", - "x7": "Delayed repeated presentation of famous face", - "x13": "Initial presentation of unfamiliar face", - "x14": "Immediate repeated presentation of unfamiliar face", - "x15": "Delayed repeated presentation of unfamiliar face", - "x17": "Initial presentation of scrambled face", - "x18": "Immediate repeated presentation of scrambled face", - "x19": "Delayed repeated presentation of scrambled face", - "x256": "Left finger key press", - "x4096": "Right finger key press", - "x4352": "Left and right finger key presses" - } - } -} diff --git a/datasets/eeg_ds003645s_hed/dataset_description.json b/datasets/eeg_ds003645s_hed/dataset_description.json index 00de310a..27c54889 100644 --- a/datasets/eeg_ds003645s_hed/dataset_description.json +++ b/datasets/eeg_ds003645s_hed/dataset_description.json @@ -1,7 +1,7 @@ { "Name": "Face processing MEEG dataset with HED annotation", - "BIDSVersion": "1.8.0", - "HEDVersion": "8.1.0", + "BIDSVersion": "1.9.0", + "HEDVersion": "8.2.0", "License": "CC0", "Authors": [ "Daniel G. Wakeman", diff --git a/datasets/eeg_ds003645s_hed_demo/dataset_description.json b/datasets/eeg_ds003645s_hed_demo/dataset_description.json index 00de310a..27c54889 100644 --- a/datasets/eeg_ds003645s_hed_demo/dataset_description.json +++ b/datasets/eeg_ds003645s_hed_demo/dataset_description.json @@ -1,7 +1,7 @@ { "Name": "Face processing MEEG dataset with HED annotation", - "BIDSVersion": "1.8.0", - "HEDVersion": "8.1.0", + "BIDSVersion": "1.9.0", + "HEDVersion": "8.2.0", "License": "CC0", "Authors": [ "Daniel G. Wakeman", diff --git a/datasets/eeg_ds003645s_hed_library/dataset_description.json b/datasets/eeg_ds003645s_hed_library/dataset_description.json index 32f7c1e7..0a9809ab 100644 --- a/datasets/eeg_ds003645s_hed_library/dataset_description.json +++ b/datasets/eeg_ds003645s_hed_library/dataset_description.json @@ -1,6 +1,6 @@ { "Name": "Face processing MEEG dataset with HED annotation", - "BIDSVersion": "1.8.0", + "BIDSVersion": "1.9.0", "HEDVersion": ["8.2.0", "sc:score_1.0.0", "test:testlib_1.0.2"], "License": "CC0", "Authors": [ diff --git a/datasets/eeg_ds003645s_hed_partnered/dataset_description.json b/datasets/eeg_ds003645s_hed_partnered/dataset_description.json index b955fa65..6844ca5a 100644 --- a/datasets/eeg_ds003645s_hed_partnered/dataset_description.json +++ b/datasets/eeg_ds003645s_hed_partnered/dataset_description.json @@ -1,6 +1,6 @@ { "Name": "Face processing MEEG dataset with HED annotation", - "BIDSVersion": "1.8.0", + "BIDSVersion": "1.9.0", "HEDVersion": ["score_1.1.0", "test:testlib_1.0.2"], "License": "CC0", "Authors": [ diff --git a/datasets/eeg_ds003645s_hed_remodel/dataset_description.json b/datasets/eeg_ds003645s_hed_remodel/dataset_description.json index 22781305..791404ad 100644 --- a/datasets/eeg_ds003645s_hed_remodel/dataset_description.json +++ b/datasets/eeg_ds003645s_hed_remodel/dataset_description.json @@ -1,7 +1,7 @@ { "Name": "Face processing MEEG dataset with HED annotation", - "BIDSVersion": "1.8.0", - "HEDVersion": "8.1.0", + "BIDSVersion": "1.9.0", + "HEDVersion": "8.2.0", "License": "CC0", "Authors": [ "Daniel G. Wakeman", diff --git a/datasets/eeg_ds003645s_hed_remodel/derivatives/remodel/backups/test_backup/backup_lock.json b/datasets/eeg_ds003645s_hed_remodel/derivatives/remodel/backups/test_backup/backup_lock.json deleted file mode 100644 index 5624e20c..00000000 --- a/datasets/eeg_ds003645s_hed_remodel/derivatives/remodel/backups/test_backup/backup_lock.json +++ /dev/null @@ -1,8 +0,0 @@ -{ - "sub-002/eeg/sub-002_task-FacePerception_run-1_events.tsv": "2023-03-29 06:56:29.236570", - "sub-002/eeg/sub-002_task-FacePerception_run-2_events.tsv": "2023-03-29 06:56:29.236570", - "sub-002/eeg/sub-002_task-FacePerception_run-3_events.tsv": "2023-03-29 06:56:29.236570", - "sub-003/eeg/sub-003_task-FacePerception_run-1_events.tsv": "2023-03-29 06:56:29.236570", - "sub-003/eeg/sub-003_task-FacePerception_run-2_events.tsv": "2023-03-29 06:56:29.236570", - "sub-003/eeg/sub-003_task-FacePerception_run-3_events.tsv": "2023-03-29 06:56:29.236570" -} \ No newline at end of file diff --git a/datasets/eeg_ds003645s_hed_remodel/derivatives/remodel/backups/test_backup/backup_root/sub-002/eeg/sub-002_task-FacePerception_run-1_events.tsv b/datasets/eeg_ds003645s_hed_remodel/derivatives/remodel/backups/test_backup/backup_root/sub-002/eeg/sub-002_task-FacePerception_run-1_events.tsv deleted file mode 100644 index 14262c88..00000000 --- a/datasets/eeg_ds003645s_hed_remodel/derivatives/remodel/backups/test_backup/backup_root/sub-002/eeg/sub-002_task-FacePerception_run-1_events.tsv +++ /dev/null @@ -1,201 +0,0 @@ -onset duration sample event_type face_type rep_status trial rep_lag value stim_file -0.004 n/a 1.0 setup_right_sym n/a n/a n/a n/a 3 n/a -24.2098181818 n/a 6052.4545 show_face_initial unfamiliar_face first_show 1.0 n/a 13 u032.bmp -25.0352727273 n/a 6258.8182 show_circle n/a n/a 1.0 n/a 0 circle.bmp -25.158 n/a 6289.5 left_press n/a n/a 1.0 n/a 256 n/a -26.7352727273 n/a 6683.8182 show_cross n/a n/a 2.0 n/a 1 cross.bmp -27.2498181818 n/a 6812.4545 show_face unfamiliar_face immediate_repeat 2.0 1.0 14 u032.bmp -27.8970909091 n/a 6974.2727 left_press n/a n/a 2.0 n/a 256 n/a -28.0998181818 n/a 7024.9545 show_circle n/a n/a 2.0 n/a 0 circle.bmp -29.7998181818 n/a 7449.9545 show_cross n/a n/a 3.0 n/a 1 cross.bmp -30.3570909091 n/a 7589.2727 show_face unfamiliar_face first_show 3.0 n/a 13 u088.bmp -31.188 n/a 7797.0 show_circle n/a n/a 3.0 n/a 0 circle.bmp -32.888 n/a 8222.0 show_cross n/a n/a 4.0 n/a 1 cross.bmp -33.3643636364 n/a 8341.0909 show_face unfamiliar_face first_show 4.0 n/a 13 u084.bmp -34.368 n/a 8592.0 show_circle n/a n/a 4.0 n/a 0 circle.bmp -36.068 n/a 9017.0 show_cross n/a n/a 5.0 n/a 1 cross.bmp -36.5561818182 n/a 9139.0455 show_face famous_face first_show 5.0 n/a 5 f123.bmp -37.3161818182 n/a 9329.0455 right_press n/a n/a 5.0 n/a 4096 n/a -37.3825454545 n/a 9345.6364 show_circle n/a n/a 5.0 n/a 0 circle.bmp -39.0825454545 n/a 9770.6364 show_cross n/a n/a 6.0 n/a 1 cross.bmp -39.5789090909 n/a 9894.7273 show_face unfamiliar_face first_show 6.0 n/a 13 u022.bmp -40.581636363600005 n/a 10145.4091 show_circle n/a n/a 6.0 n/a 0 circle.bmp -42.2816363636 n/a 10570.4091 show_cross n/a n/a 7.0 n/a 1 cross.bmp -42.8025454545 n/a 10700.6364 show_face famous_face first_show 7.0 n/a 5 f094.bmp -43.5489090909 n/a 10887.2273 right_press n/a n/a 7.0 n/a 4096 n/a -43.7198181818 n/a 10929.9545 show_circle n/a n/a 7.0 n/a 0 circle.bmp -45.4198181818 n/a 11354.9545 show_cross n/a n/a 8.0 n/a 1 cross.bmp -46.043454545500005 n/a 11510.8636 show_face scrambled_face first_show 8.0 n/a 17 s150.bmp -46.95072727270001 n/a 11737.6818 show_circle n/a n/a 8.0 n/a 0 circle.bmp -48.6507272727 n/a 12162.6818 show_cross n/a n/a 9.0 n/a 1 cross.bmp -49.1343636364 n/a 12283.5909 show_face unfamiliar_face delayed_repeat 9.0 6.0 15 u088.bmp -50.1352727273 n/a 12533.8182 show_circle n/a n/a 9.0 n/a 0 circle.bmp -51.8352727273 n/a 12958.8182 show_cross n/a n/a 10.0 n/a 1 cross.bmp -52.3916363636 n/a 13097.9091 show_face famous_face first_show 10.0 n/a 5 f063.bmp -53.100727272700006 n/a 13275.1818 right_press n/a n/a 10.0 n/a 4096 n/a -53.2616363636 n/a 13315.4091 show_circle n/a n/a 10.0 n/a 0 circle.bmp -54.96163636359999 n/a 13740.4091 show_cross n/a n/a 11.0 n/a 1 cross.bmp -55.5489090909 n/a 13887.2273 show_face unfamiliar_face delayed_repeat 11.0 7.0 15 u084.bmp -56.5589090909 n/a 14139.7273 show_circle n/a n/a 11.0 n/a 0 circle.bmp -58.258909090900005 n/a 14564.7273 show_cross n/a n/a 12.0 n/a 1 cross.bmp -58.8061818182 n/a 14701.5455 show_face unfamiliar_face first_show 12.0 n/a 13 u004.bmp -59.5407272727 n/a 14885.1818 left_press n/a n/a 12.0 n/a 256 n/a -59.7270909091 n/a 14931.7727 show_circle n/a n/a 12.0 n/a 0 circle.bmp -61.4270909091 n/a 15356.7727 show_cross n/a n/a 13.0 n/a 1 cross.bmp -61.9134545455 n/a 15478.3636 show_face unfamiliar_face immediate_repeat 13.0 1.0 14 u004.bmp -62.850727272700006 n/a 15712.6818 left_press n/a n/a 13.0 n/a 256 n/a -62.8934545455 n/a 15723.3636 show_circle n/a n/a 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-74.7598181818 n/a 18689.9545 show_face scrambled_face first_show 17.0 n/a 17 s043.bmp -75.6989090909 n/a 18924.7273 left_press n/a n/a 17.0 n/a 256 n/a -75.7334545455 n/a 18933.3636 show_circle n/a n/a 17.0 n/a 0 circle.bmp -77.4334545455 n/a 19358.3636 show_cross n/a n/a 18.0 n/a 1 cross.bmp -78.0670909091 n/a 19516.7727 show_face scrambled_face immediate_repeat 18.0 1.0 18 s043.bmp -78.8107272727 n/a 19702.6818 left_press n/a n/a 18.0 n/a 256 n/a -78.9434545455 n/a 19735.8636 show_circle n/a n/a 18.0 n/a 0 circle.bmp -80.6434545455 n/a 20160.8636 show_cross n/a n/a 19.0 n/a 1 cross.bmp -81.1916363636 n/a 20297.9091 show_face famous_face delayed_repeat 19.0 12.0 7 f094.bmp -81.8416363636 n/a 20460.4091 right_press n/a n/a 19.0 n/a 4096 n/a -82.1370909091 n/a 20534.2727 show_circle n/a n/a 19.0 n/a 0 circle.bmp -83.8370909091 n/a 20959.2727 show_cross n/a n/a 20.0 n/a 1 cross.bmp -84.4989090909 n/a 21124.7273 show_face scrambled_face first_show 20.0 n/a 17 s083.bmp -85.43072727270001 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a/datasets/eeg_ds004105s_hed/dataset_description.json +++ b/datasets/eeg_ds004105s_hed/dataset_description.json @@ -1,6 +1,6 @@ { "Name": "BCIT Auditory Cueing", - "BIDSVersion": "1.8.0", + "BIDSVersion": "1.9.0", "HEDVersion": "8.2.0", "License": "CC0", "Authors": [ diff --git a/datasets/eeg_ds004106s_hed/dataset_description.json b/datasets/eeg_ds004106s_hed/dataset_description.json index aa77c447..6c29b56c 100644 --- a/datasets/eeg_ds004106s_hed/dataset_description.json +++ b/datasets/eeg_ds004106s_hed/dataset_description.json @@ -1,7 +1,7 @@ { "Name": "BCIT Advanced Guard Duty", - "BIDSVersion": "1.7.0", - "HEDVersion": "8.0.0", + "BIDSVersion": "1.9.0", + "HEDVersion": "8.2.0", "License": "CC0", "Authors": [ "Jonathan Touryan (data and curation)", diff --git a/datasets/eeg_ds004117s_hed_sternberg/dataset_description.json b/datasets/eeg_ds004117s_hed_sternberg/dataset_description.json index 46dc69f2..78b06148 100644 --- a/datasets/eeg_ds004117s_hed_sternberg/dataset_description.json +++ b/datasets/eeg_ds004117s_hed_sternberg/dataset_description.json @@ -1,7 +1,7 @@ { "Name": "Sternberg Working Memory", - "BIDSVersion": "1.7.0", - "HEDVersion": "8.0.0", + "BIDSVersion": "1.9.0", + "HEDVersion": "8.2.0", "License": "CC0", "Authors": [ "Julie Onton (data)", diff --git a/datasets/fmri_ds002790s_hed_aomic/dataset_description.json b/datasets/fmri_ds002790s_hed_aomic/dataset_description.json index b6538d84..f2f38d09 100644 --- a/datasets/fmri_ds002790s_hed_aomic/dataset_description.json +++ b/datasets/fmri_ds002790s_hed_aomic/dataset_description.json @@ -1,6 +1,6 @@ { "Name": "AOMIC-PIOP2", - "BIDSVersion": "1.8.0", + "BIDSVersion": "1.9.0", "HEDVersion": "8.2.0", "License": "CC0", "Authors": [ diff --git a/datasets/fmri_soccer21s_hed/dataset_description.json b/datasets/fmri_soccer21s_hed/dataset_description.json index f0476649..33c5ec5e 100644 --- a/datasets/fmri_soccer21s_hed/dataset_description.json +++ b/datasets/fmri_soccer21s_hed/dataset_description.json @@ -7,7 +7,7 @@ "CodeURL": "https://github.com/Donders-Institute/bidscoin" } ], - "BIDSVersion": "1.8.0", + "BIDSVersion": "1.9.0", "HEDVersion": "8.2.0", "DatasetType": "raw", "License": "Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)", diff --git a/docs/source/HedOnlineTools.md b/docs/source/HedOnlineTools.md index f127dfdc..ad051ed8 100644 --- a/docs/source/HedOnlineTools.md +++ b/docs/source/HedOnlineTools.md @@ -1,7 +1,7 @@ # HED online tools HED web-based tools are available directly through a browser from -[https://hedtools.ucsd.edu/hed](https://hedtools.ucsd.edu/hed) or +[**https://hedtools.org/hed]**(https://hedtools.org/hed) or as RESTful services from the same URL. These services do not require a login to use. @@ -371,7 +371,7 @@ The non-HED portions of the spreadsheet and the prefix-columns are the same as i - Select the HED version. - Upload a spreadsheet file (`.tsv` or `.xlsx`). - Select a worksheet if necessary. - - Check the columns that contain HED information and should be validated. + - Check the columns that contain HED strings that should be converted to long form. - Click the `Process` button. **Returns:** @@ -401,7 +401,7 @@ The non-HED portions of the spreadsheet and the prefix-columns are the same as i - Select the HED version. - Upload a spreadsheet file (`.tsv` or `.xlsx`). - Select a worksheet if necessary. - - Check the columns that contain HED information and should be validated. + - Check the columns that contain HED strings to be converted to short form. - Click the `Process` button. **Returns:** @@ -558,7 +558,8 @@ JSON sidecars, BIDS-style events files, and spreadsheets in `.tsv` or `.xlsx` fo Support is also included for assembling the annotations for a BIDS-style events file with a JSON sidecar and for generating a template of a JSON sidecar from a BIDS events file. -The [**web_services**](https://github.com/hed-standard/hed-examples/tree/main/hedcode/matlab_scripts/web_services) directory in the `hed-examples` repository provides MATLAB examples of how to call these +The [**web_services**](https://github.com/hed-standard/hed-examples/tree/main/hedcode/matlab_scripts/web_services) +directory in the `hed-examples` GitHub repository provides MATLAB examples of how to call these services in MATLAB. ### Service setup diff --git a/hedcode/data/schema_data/HED7.2.0.xml b/hedcode/data/schema_data/HED7.2.0.xml deleted file mode 100644 index d62c07af..00000000 --- a/hedcode/data/schema_data/HED7.2.0.xml +++ /dev/null @@ -1,4002 +0,0 @@ - - - Changelog -* 3/16/2021: v.7.1.3 Adopted the new format for mediawiki files. -* 11/22/2020: v. 7.1.2 Add extensionAllowed to top-level Item subtree. -* 7/27/2020: v. 7.1.1 Corrected extensionAllowed on several top-level and second-level items. Removed extra h:m from clockTime. Removed unitSymbol from clockTime. Added dateTime unit class. -* 5/9/2020: Added the clockTime unit class -* 4/25/2020: v. 7.1.0 Added unit modifiers and updated unit classes to support SI units. -* 9/29/2019: v. 7.0.5: Added Visual/Rendering type/Screen/Head-mounted display. Added extensionAllowed to Sensory presentation. Added Tone and Genre under Sensory presentation/Auditory/Music. -* 8/18/2019: v. 7.0.4: Added extensionsAllowed to Custom and removed extensionsAllowed from nodes under Attribute and Item/Object. Also replaced per-sec with per-s in units. -* 7/8/2019: v. 7.0.3: Removed the extra Action/Turn node. -* 5/18/2019: v. 7.0.2: Added centisecond and millisecond as valid time units. -* 3/7/2018: v. 7.0.1: Added Paradigm/Psychomotor vigilance task. -* 2/15/2018: v. 7.0.0: Removed parentheses from some paradigm tags (used hyphens instead) -* 1/11/2018: v. 6.0.5: Changed unit class for a number of values from velocity to speed. -* 8/4/2017: v. 6.0.4: Added Machine failure detection task to paradigms list. -* 7/20/2017: v. 6.0.3: Removed Action observation paradigm since there is already Action observation task. -* 7/17/2017: v. 6.0.2: Added Attribute/Object control/Accelerate and Attribute/Object control/Decelerate. Also added a description for extensionAllowed. -* 7/14/2017: v. 6.0.1: Replaced Item/Natural scene/Arial with Item/Natural scene/Aerial. -* 7/13/2017: v. 6.0.0: Replaced XXX in Event/Category/Experimental stimulus/Instruction/XXX with Event/Category/Experimental stimulus plus (Attribute/Instruction, Action/XXX). Moved a number of instructions under Action/. Also added Rest eyes open', Rest eyes closed and Imagined emotion paradigms. Removed Action/Imagine and instead one should use Attribute/Imagined. -* 6/22/2017: v. 5.2.3: Added clarification for Attribute/Background (stimuli to be ignored) -* 3/22/2017: v. 5.2.2: Fixed the missing [ in Attribute/Imagined. -* 3/16/2017: v. 5.2.1: Added Action/Interact, Action/Interact/With human, Action/Take survey, Action/Eye blink/Left base, Left zero, Left half height, Right half height, Right zero, right base. -* 3/7/2017, v 5.1.1: Added Attribute/Blink/Duration and fixed some issues. -* 2/16/2017, v 5.0.0: Changed Attribute/Presentation fraction to Attribute/Presentation/Fraction and added a few other attributes under Attribute/Presentation. Removed Participant/Role and and added Attribute/Role. -* 2/9/2017, v 4.0.5: added Paradigm/ID screening tag and moved language n-back under n-back paradigm. Also moved Flickering/rate to Attribute/Temporal rate. -* 2/2/2017, v 4.0.4: moved Height and Width from Experiment/Context/Fixed screen/ to under Attribute/ -* 1/31/2017, v 4.0.3: added Attribute/Condition. -* 1/5/2017, v. 4.0.2: fixed description in Sentence and Paragraph -* 12/1/2016, v. 4.0.1: added Blink action and attributes. -* 11/10/2016, v. 4.0.0: changed "Event/Sequence group id" to "Event/Group ID". Added "Paradigm/Instructed movement", "Attribute/Response start delay" and "Attribute/Response end delay". -* 9/19/2016: Typo in Custom tag description fixed. -* 9/8/2016: Added Attribute/Action judgment/Indeterminate. -* 9/6/2016: Added Attribute/Imagined -* 9/6/2016 Added back Experiment control/Activity/Participant action.in -* 9/1/2016: Added Eyes open/Keep,Eyes close/Keep. Added Action/Make fist Action/Curl toes. MAJOR: moved Participant action/... from Event/Category/Experiment control/Activity to under Attribute/Activity judgment/. This is a backward incompatible change. -* 8/4/2016: Added Attribute/Participant indication tag. -* 7/21/2016: Added Attribute/Intended effect tag. This can be used e.g. to specify an image in an RSVP experiment where it was intended to be perceived as a target (but it may not have by the subject). -* 6/22/2016: Added Attribute/Temporal uncertainty tag along with its child nodes. Also required a child for Attribute/Presentation fraction tag. -* 6/16/2016: Added sleep stages. -* 5/23/2016: Added more description to Attribute/Probability, allowing text values like low and high in addition to numerical values between 0 and 1. -* 3/31/2016: Added constant and variable delays under Participant/Effect/Cognitive/Cue. -* 3/10/2016: -** Added Non-informative under Cognitive/Feedback -** Added Cue under Cognitive -* 2/25/2016: -** Removed /Participant/Effect/Cognitive/Oddball/Three stimuli/Target -** Moved Non-target from under Expected to the same level as Target, this is because in Three stimuli oddball paradigm the Non-targets are oddballs and hence not expected. -** Note: user are encouraged to add Expected and Oddball tags when tagging targets and non-targets -** Added Presentation fraction -'''Syntax''' -HED tags can only be separated by commas. Use semicolons (;) instead of commas in event descriptions since otherwise extra commas could confuse HED parsers. -From version 2.2, HED adheres to http://semver.org/ versioning. - - Event - - Category - This is meant to designate the reason this event was recorded - - Initial context - The purpose is to set the starting context for the experiment --- and if there is no initial context event---this information would be stored as a dataset tag - - - Participant response - The purpose of this event was to record the state or response of a participant. Note: participant actions may occur in other kinds of events, such as the experimenter records a terrain change as an event and the participant happens to be walking. In this case the event category would be Environmental. In contrast, if the participant started walking in response to an instruction or to some other stimulus, the event would be recorded as Participant response - - - Technical error - Experimenters forgot to turn on something or the cord snagged and something may be wrong with the data - - # - Description as string - - - - Participant failure - Situation in which participant acts outside of the constraints of the experiment -- such as driving outside the boundary of a simulation experiment or using equipment incorrectly - - # - Description as string - - - - Environmental - Change in experimental context such as walking on dirt versus sidewalk - - # - Description as a string - - - - Experimental stimulus - - Instruction - - - - Experimental procedure - For example doing a saliva swab on the person - - # - Description as string - - - - Incidental - Not a part of the task as perceived by/instructed to the participant --- for example an airplane flew by and made noise or a random person showed up on the street - - # - Description as string - - - - Miscellaneous - Events that are only have informational value and cannot be put in other event categories - - # - Description as a string - - - - Experiment control - Information about states and events of the software program that controls the experiment - - Sequence - - Permutation ID - - # - Permutation number/code used for permuted experiment parts - - - - Experiment - Use Attribute/Onset and Attribute/Offset to indicate start and end of the experiment - - - Block - Each block has the same general context and contains several trials -- use Attribute/Onset and Attribute/Offset to specify start and end - - # - Block number or identifier - - - - Trial - Use Attribute/Onset and Attribute/Offset to specify start and end - - # - Trial number or identifier - - - - Pause - Use Attribute/Onset and Attribute/Offset to specify start and end - - - - Task - - # - Label here - - - - Activity - Experiment-specific actions such as moving a piece in a chess game - - Participant action - - - - Synchronization - An event used for synchronizing data streams - - Display refresh - - - Trigger - - - Tag - - # - Actual tag: string or integer - - - - - Status - - Waiting for input - - - Loading - - - Error - - - - Setup - - Parameters - - # - Experiment parameters in some a string. Do not used quotes. - - - - - - - ID - A number or string label that uniquely identifies an event instance from all others in the recording (a UUID is strongly preferred). - - # - ID of the event - - - - Group ID - A number or string label that uniquely identifies a group of events associated with each other. - - # - ID of the group - - - - Duration - An offset that is implicit after duration time passed from the onset - - # - - - - Description - Same as HED 1.0 description for human-readable text - - # - - - - Label - A label for the event that is less than 20 characters. For example /Label/Accept button. Please note that the information under this tag is primarily not for use in the analysis and is provided for the convenience in referring to events in the context of a single study. Please use Custom tag to define custom event hierarchies. Please do not mention the words Onset or Offset in the label. These should only be placed in Attribute/Onset and Attribute/Offset. Software automatically generates a final label with (onset) or (offset) in parentheses added to the original label. This makes it easier to automatically find onsets and offsets for the same event. - - # - - - - Long name - A long name for the event that could be over 100 characters and could contain characters like vertical bars as separators. Long names are used for cases when one wants to encode a lot of information in a single string such as Scenario | VehiclePassing | TravelLaneBLocked | Onset - - # - - - - - Item - - ID - Optional - - # - - - Local - For IDs with local scope --- that is IDs only defined in the scope of a single event. The local ID 5 in events 1 and 2 may refer to two different objects. The global IDs directly under ID/ tag refer to the same object through the whole experiment - - # - - - - - Group ID - Optional - - # - - - - Object - Visually discernable objects. This item excludes sounds that are Items but not objects - - Vehicle - - Bicycle - - - Car - - - Truck - - - Cart - - - Boat - - - Tractor - - - Train - - - Aircraft - - Airplane - - - Helicopter - - - - - Person - - Pedestrian - - - Cyclist - - - Mother-child - - - Experimenter - - - - Animal - - - Plant - - Flower - - - Tree - - Branch - - - Root - - - - - Building - - - Food - - Water - - - - Clothing - - Personal - clothing that is on the body of the subject - - - - Road sign - - - Barrel - - - Cone - - - Speedometer - - - Construction zone - - - 3D shape - - - Sphere - - - Box - - Cube - - - - - 2D shape - Geometric shapes - - Ellipse - - Circle - - - - Rectangle - - Square - - - - Star - - - Triangle - - - Gabor patch - - - Cross - By default a vertical-horizontal cross. For a rotated cross add Attribute/Object orientation/Rotated/ tag - - - Single point - - - Clock face - Used to study things like hemispheric neglect. The tag is related to the clock-drawing-test - - # - - - - - Pattern - - Checkerboard - - - Abstract - - - Fractal - - - LED - - - Dots - - Random dot - - - - Complex - - - - Face - - Whole face with hair - - - Whole face without hair - - - Cut-out - - - Parts only - - Nose - - - Lips - - - Chin - - - Eyes - - Left only - - - Right only - - - - - - Symbolic - Something that has a meaning, could be linguistic or not such as a stop signs. - - Braille character - - - Sign - Like the icon on a stop sign. This should not to be confused with the actual object itself. - - Traffic - - Speed limit - - # - Always give units e.g. mph or kph - - - - - - Character - - Digit - - - Pseudo-character - Alphabet-like but not really - - - Letter - Authograph or valid letters and numbers such as A or 5 - - # - - - - - Composite - - - - Natural scene - - Aerial - - Satellite - - - - - Drawing - Cartoon or sketch - - Line drawing - - - - Film clip - - Commercial TV - - - Animation - - - - IAPS - International Affective Picture System - - - IADS - International Affective Digital Sounds - - - SAM - The Self-Assessment Manikin - - - - Sensory presentation - Object manifestation - - Auditory - Sound - - Nameable - - - Cash register - - - Ding - Often associated with positive valence - - - Buzz - Often associated with negative valence - - - Fire alarm - - - Click - - ABR - Auditory Brainstem Response - - - - Tone - - - Siren - - - Music - - Chord sequence - - - Vocal - - - Instrumental - - - Tone - - - Genre - - - - Noise - - White - - - Colored - Not white --- for example a 1/f spectrum - - - - Human voice - - - Animal voice - - Bird - - - Dog - - - Insect - - - Squirrel - - - - Real world - For example people walking or machines operating - - Pedestrian - - - Footsteps - - Walking - - - Running - - - - Noisemaker - - - Construction noise - - - Machine - - - Vehicle - - Horn - - - Aircraft - - Airplane - - - Helicopter - - - - Train - - - Cart - - - Car alarm - - - Car - - - Bicycle - - - - - Nonverbal vocal - - Emotional - - Crying - - - Sighing - - - - Gulp - - - Gurgle - - - Sneeze - - - Cough - - - Yawn - - - - Nonvocal - A car engine or gears grinding --- anything that is not made by a human or an animal - - Engine - - - - - Olfactory - Odor - - - Taste - - - Tactile - Pressure - - - Visual - - Rendering type - - Screen - - Head-mounted display - - - View port - Two or more views on the same object --- for example one from top one from street view - - ID - - # - A descriptive label for the viewport - - - - - 2D - - - 3D - - - Movie - - Video-tape - - - Motion-capture - Stick figure of motion capture of someone else - - Point light - - - Stick figure - - - Outline - - - - Flickering - - - Steady state - - - - - Real-world - - - LED - Stimulus is turning on/off one or a few LEDs - - - - - - Attribute - - Onset - Default - - - Offset - - - Imagined - This is used to identity that the (sub)event only happened in the imagination of the participant, e.g. imagined movements in motor imagery paradigms. - - - State ID - This is used to identify a group of events that are changing the state of a variable where the onset means the offset of any other and a change in the state - - # - ID which could be a number or any string - - - - Repetition - When the same type of event such as a fixation on the exact same object happens multiple times and it might be necessary to distinguish the first look vs. others - - # - Number starting from 1 where 1 indicates the first occurrence and 2 indicates the second occurrence - - - - Temporal rate - - # - In Hz - - - - Condition - Specifies the value of an independent variable (number of letters, N, in an N-back task) or function of independent variables that is varied or controlled for in the experiment. This attribute is often specified at the task level and can be associated with specification of an experimental stimulus or an experiment context (e.g. 1-back, 2-back conditions in an N-back task, or changing the target type from faces to houses in a Rapid Serial Visual Presentation, or RSVP, task.) - - # - the condition - - - - Action judgment - External judgment (assumed to be ground truth, e.g. from an experiment control software or an annotator) about participant actions such as answering a question, failing to answer in time, etc. - - Correct - - - Incorrect - Wrong choice but not time out - - - Indeterminate - It cannot be determined that the action was correct or incorrect. - - - Time out - - Missed - Participant failed or could not have perceived the instruction due to their eyes being off-screen or a similar reason. Not easy to deduce this but it is possible - - - - Inappropriate - A choice that is not allowed such as moving a chess piece to a location it should not go based on game rules - - - - Response start delay - The time interval between this (stimulus) event and the start of the response event specified, usually by grouping with the event ID of the response start event. - - # - - - - Response end delay - The time interval between this (stimulus) event and the end of the response event specified, usually by grouping with the event ID of the response end event. - - # - - - - Social - Involving interactions among multiple agents such as humans or dogs or robots - - - Peak - Peak velocity or acceleration or jerk - - - Object side - Could be the left, right, or both sides of a person or a vehicle - - Reference object ID - Place object ID after this - - # - - - - Right - - - Left - - - Front - - - Back - - - Top - - - Bottom - - - Starboard - - - Port - - - Passenger side - Side of a car - - - Driver side - Side of a car - - - Bow - Front of a ship - - - Stern - Back of the ship - - - - Direction - Coordinate system is inferred from Attribute/Location. To specify a vector combine subnodes with number --- for example Attribute/Top/10, Attribute/Direction/Left/5 to create a vector with coordinates 10 and 5 - - Top - Combine Attribute/Direction/Top and Attribute/Direction/Left to mean the upper left - - # - - - - Bottom - - # - - - - Left - - # - - - - Right - - # - - - - Angle - Clockwise angle in degrees from vertical - - # - Clockwise angle in degrees from vertical - - - - North - - # - - - - South - - # - - - - East - - # - - - - West - - # - - - - Forward - Like a car moving forward - - - Backward - Like a car moving backward - - - - Location - Spot or center of an area. Use Area were you are referring to something with significant extent and emphasizing its boundaries, like a city - - # - location label - - - Screen - Specify displacements from each subnode in pixels or degrees or meters. Specify units such as Attribute/Location/Screen/Top/12 px - - Center - - # - - - - Top - You can combine Attribute/Location/Top and Attribute/Location/Left to designate UpperLeft and so on - - # - - - - Bottom - - # - - - - Left - - # - - - - Right - - # - - - - Angle - - # - Clockwise angle in degrees from vertical - - - - Center displacement - - # - displacement from screen center, in any direction, in degrees, cm, or other lengths - - - Horizontal - - # - Displacement from screen center in any direction - - - - Vertical - - # - Displacement from screen center in any direction - - - - - - Lane - For example a car lane - - Rightmost - - - Leftmost - - - Right of expected - - - Left of expected - - - Cruising - - - Passing - The lane that cars use to take over other cars - - - Oncoming - - - - Real-world coordinates - - Room - - xyz - have a subnode, e.g. Attribute/Location/Real-world coordinates/Room/xyz/10 50 30 - - # - - - - - - Reference frame - - Specified absolute reference - - - Relative to participant - - Participant ID - - # - - - - Left - - - Front - - - Right - - - Back - - - Distance - - # - Distance is in meters by default - - - Near - - - Moderate - - - Far - - - - Azimuth - - # - Clockwise with units preferably in degrees - - - - Elevation - - # - Preferably in degrees - - - - - - - Object orientation - - Rotated - - Degrees - - # - Preferably in degrees - - - - - - Size - - Length - - # - In meters or other units of length - - - - Width - - # - in meters - - - - Height - - # - Default units are meters - - - - Area - - # - - - - Volume - - # - In cubic-meters or other units of volume - - - - Angle - - # - In degrees or other units of angle - - - - - Item count - Number of items for example when there are 3 cars and they are identified as a single item - - # - Numeric value of number of items # - - - <=# - Number of items less than or equal to # - - - >=# - Number of items more than or equal to # - - - - Auditory - - Frequency - - # - In HZ - - - - Loudness - - # - in dB - - - - Ramp up - Increasing in amplitude - - - Ramp down - Decreasing in amplitude - - - - Blink - - Time shut - The amount of time the eyelid remains closed (typically measured as 90% of the blink amplitude), in seconds. - - # - - - - Duration - Duration of blink, usually the half-height blink duration in seconds taken either from base or zero of EEG signal. For eye-trackers, usually denotes interval when pupil covered by eyelid. - - # - - - - PAVR - Amplitude-Velocity ratio, in centiseconds - - # - - - - NAVR - Negative Amplitude-Velocity ratio, in centiseconds - - # - - - - - Visual - - Bistable - - - Background - - - Foreground - - - Up-down separated - Stimuli presented both at the top and the bottom of fovea - - # - Angle of separation in degrees by default - - - - Bilateral - For bilateral visual field stimulus presentations - - # - Angle of separation in degrees by default - - - - Motion - - Down - - # - e.g. 3 degrees-per-second - - - - Up - - # - e.g. 3 degrees-per-second - - - - Horizontal - - Right - - # - e.g. 3 degrees-per-second - - - - Left - - # - e.g. 3 degrees-per-second - - - - - Oblique - - Clock face - - # - For example 4:30 - - - - - - Fixation point - - - Luminance - - # - In candelas by default - - - - Color - - Dark - - - Light - - - Aqua - These are CSS 3 basic color names - - - Black - - - Fuchsia - - - Gray - - - Lime - - - Maroon - - - Navy - - - Olive - - - Purple - - - Silver - - - Teal - - - White - - - Yellow - - - Red - - # - R value of RGB between 0 and 1 - - - - Blue - - # - B value of RGB between 0 and 1 - - - - Green - - # - G value of RGB between 0 and 1 - - - - Hue - - # - H value of HSV between 0 and 1 - - - - Saturation - - # - S value of HSV between 0 and 1 - - - - Value - - # - V value of HSV between 0 and 1 - - - - Achromatic - Indicates gray scale - - # - White intensity between 0 and 1 - - - - - - Nonlinguistic - Something that conveys meaning without using words such as the iconic pictures of a man or a woman on the doors of restrooms. Another example is a deer crossing sign with just a picture of jumping deer. - - - Semantic - Like in priming or in congruence - - - Language - - Unit - - Phoneme - - - Syllable - - - Word - - Noun - - Proper - A proper noun that refers to a unique entity such as London or Jupiter - - - Common - A noun that refers to a class of entities such as cities or planets or corporations such as a Dog or a Skyscraper - - - - Verb - - - Adjective - - - Pseudoword - - - # - Actual word - - - - Sentence - - Full - - - Partial - - - # - Actual sentence - - - - Paragraph - - # - Actual paragraph - - - - Story - Multiple paragraphs making a detailed account - - - - Family - - Asian - - Chinese - - - Japanese - - - - Latin - - English - - - German - - - French - - - - - - Induced - Such as inducing emotions or keeping someone awake or in a coma with an external intervention - - - Emotional - - Arousal - Only in the context of 2D emotion representation - - # - A value between -1 and 1 - - - - Positive valence - Valence by itself can be the name of an emotion such as sadness so this tag distinguishes the type of emotion - - # - Ranges from 0 to 1 - - - - Negative valence - - # - Ranges from 0 to 1 - - - - - Priming - - Motoric - - - Emotional - - - Perceptual - - - - Subliminal - - Unmasked - - - Masked - - Forward - - - Backward - - - - - Supraliminal - By default this is assumed about each stimulus - - - Liminal - At the 75%-25% perception threshold - - - Probability - Use to specify the level of certainty about the occurrence of the event. Use either numerical values as the child node or low, high, etc. - - - Temporal uncertainty - Use to specify the amount of uncertainty in the timing of the event. Please notice that this is different from Attribute/Probability tag which relates to the occurrence of event and can be interpretative as the integral of probability density across a distribution whose shape (temporal extent) is specified by Attribute/Temporal uncertainty - - # - - - Standard deviation - implies that the distribution of temporal uncertainty is Gaussian with the provided standard deviation (in seconds). - - # - - - - - Presentation - Attributes associated with visual, auditory, tactile, etc. presentation of an stimulus - - Fraction - the fraction of presentation of an Oddball or Expected stimuli to the total number of same-class presentations, e.g. 10% of images in an RSVP being targets - - # - - - - Cued - what is presented is cued to the presentation of something else - - - Background - presented in the background such as background music, background image, etc. The main factor here is that background presentations are to be ignored, e.g. ignore math question auditory stimuli. - - - - Intended effect - This tag is to be grouped with Participant/Effect/Cognitive to specify the intended cognitive effect (of the experimenter). This is to differentiate the resulting group with Participant/Effect which specifies the actual effect on the participant. For example, in an RSVP experiment if an image is intended to be perceived as a target, (Participant/Effect/Cognitive/Target, Attribute/Intended effect) group is added. If the image was perceived by the subject as a target (e.g. they pressed a button to indicate so), then the tag Participant/Effect/Cognitive/Target is also added: Participant/Effect/Cognitive/Target, (Participant/Effect/Cognitive/Target, Attribute/Intended effect). otherwise the Participant/Effect/Cognitive/Target tag is not included outside of the group. - - - Instruction - This tag is placed in events of type Event/Category/Experimental stimulus/Instruction, grouped with one or more Action/ tags to replace the detailed specification XXX in Event/Category/Experimental stimulus/Instruction/XXX) in previous versions. Usage example: Event/Category/Experimental stimulus/Instruction, (Action/Fixate, Attribute/Instruction) - - - Participant indication - This tag is placed in events of type Event/Category/Participant response and grouped with Participant/Effect/Cognitive/.. tags to specify the type of cognitive effect the participant has experienced. For example, in an RSVP paradigm, the subject can indicate the detection of a target with a button press. The HED string associated with this button press must include (Attribute/Participant indication, Participant/Effect/Cognitive/Target,...) - - - Path - - Velocity - Use Attribute/Onset or Attribute/Offset to specify onset or offset - - # - Numeric value with default units of m-per-s - - - - Acceleration - - # - Numeric value with default units of m-per-s2 - - - - Jerk - - # - Numeric value with default units of m-per-s3 - - - - Constrained - For example a path cannot cross some region - - - - File - File attributes - - Name - - - Size - - # - Numeric value with default units of mb - - - - # - Number of files - - - - Object control - Specifies control such as for a vehicle - - Perturb - - - Collide - - - Near miss - Almost having an accident resulting in negative consequences - - - Correct position - After a lane deviation or side of the walkway - - - Halt - Time at which speed becomes exactly zero - - - Brake - - - Shift lane - - - Cross - Crossing in front of another object such as a vehicle - - - Pass by - Passing by another object or the participant - - - Accelerate - - - Decelerate - - - - Association - - Another person - Item such as a cup belonging to another person - - - Same person - Item such as a cup belonging to the participant - - - - Extraneous - Button presses that are not meaningful for example due to intrinsic mechanical causes after a meaningful press - - - Role - The role of the agent (participant, character, AI..) - - Leader - - - Follower - - - # - - - - - Action - May or may not be associated with a prior stimulus and can be extended - - Involuntary - Like sneezing or tripping on something or hiccuping - - Hiccup - - - Cough - - - Sneeze - - - Stumble - Temporary and involuntary loss of balance - - - Fall - - - Tether Jerk - When a tether attached to the subject is stuck/snagged and forces the participant to involuntary accommodate/react to it - - - Clear Throat - - - Yawn - - - Sniffle - - - Burp - - - Drop - For example something drops from the hand of the subject - - - - Make fist - - Open and close - Continue to open and close the fist, for example in motor imagery paradigms. - - - - Curl toes - - Open and close - Continue to curl and uncurl toes, for example in motor imagery paradigms. - - - - Button press - - Touch screen - - - Keyboard - - - Mouse - - - Joystick - - - - Button hold - Press a button and keep it pressed - - - Button release - - - Cross boundary - - Arrive - - - Depart - - - - Speech - - - Hum - - - Eye saccade - Use Attribute/Peak for the middle of saccade and Attribute/Onset for the start of a saccade - - - Eye fixation - - - Eye blink - - Left base - The time of the first detectable eyelid movement on closing. - - - Left zero - The last time at which the EEG/EOG signal crosses zero during eyelid closing. - - - Left half height - The time at which the EEG/EOG signal reaches half maximum height during eyelid closing. - - - Max - The time at which the eyelid is the most closed. - - - Right half height - The time at which the EEG/EOG signal reaches half maximum height during eyelid opening. - - - Right zero - The first time at which the EEG/EOG signal crosses zero during eyelid opening. - - - Right base - The time of the last detectable eyelid movement on opening. - - - - Eye close - Close eyes and keep closed for more than approximately 0.1 s - - Keep - Keep the eye closed. If a value is provided it indicates the duration for this. - - # - the duration (by default in seconds) that they keep their eye closed. - - - - - Eye open - Open eyes and keep open for more than approximately 0.1 s - - Keep - Keep the eye open. If a value is provided it indicates the duration for this. - - # - the duration (by default in seconds) that they keep their eye open. - - - With blinking - Default. Allow blinking during the eye-open period. - - - Without blinking - Without blinking during the eye-open period. - - - - - Turn - Change in direction of movement or orientation. This includes both turn during movement on a path and also rotations such as head turns - - - Point - - - Push - - - Grab - - - Tap - When there is nothing to be pressed for example like tapping a finger on a chair surface to follow a rhythm - - - Lift - - - Reach - Requires a goal such as reaching to touch a button or to grab something. Stretching your body does not count as reach. - - To Grab - - - To Touch - - - - Course correction - Change the direction of a reach in the middle to adjust for a moving target. - - - Interact - - With human - - - - Take survey - - - Stretch - Stretch your body such as when you wake up - - - Bend - - - Deep breath - - - Laugh - - - Sigh - - - Groan - - - Scratch - - - Switch attention - - Intramodal - In the same modality but with a change in details such as changing from paying attention to red dots and instead of blue dots - - Visual - - - Auditory - - - Tactile - - - Taste - - - Smell - - - - Intermodal - Between modalities such as changing from audio to visual - - From modality - - Visual - - - Auditory - - - Tactile - - - Taste - - - Smell - - - - To modality - - Visual - - - Auditory - - - Tactile - - - Taste - - - Smell - - - - - - Walk - - Stride - Use onset and offset attributes to indicate different walking stride stages - - - Faster - increasing the speed of walking - - - Slower - decreasing the speed of walking - - - - Control vehicle - Controlling an object that you are aboard - - Drive - Driving a vehicle such as a car - - Correct - Correct for a perturbation - - - Near miss - - - Collide - - - - Stop - Brake a car - - - Pilot - Pilot a vehicle such as an airplane - - - - Teleoperate - Control an object that you are not aboard - - - Allow - Allow access to something such as allowing a car to pass - - - Deny - Deny access to something such as preventing someone to pass - - - Step around - - - Step over - - - Step on - - - Swallow - - - Flex - - - Evade - - - Shrug - - - Dance - - - Open mouth - - - Whistle - - - Read - - - Attend - - - Recall - - - Generate - - - Repeat - - - Hold breath - - - Breathe - - - Rest - - - Count - - - Move - - Upper torso - - - Lower torso - - - Whole body - - - - Speak - - - Sing - - - Detect - - - Name - - - Smile - - - Discriminate - - - Track - - - Encode - - - Eye-blink inhibit - - - - Participant - - ID - If not given assume 1 - - # - Numeric value of an ID - - - - Effect - How the stimulus effects the participants - - Cognitive - - Meaningful - - - Not meaningful - - - Newly learned meaning - - - Reward - - Low - - - Medium - - - High - - - # - Monetary values in some currency such as $10, or the ratio of the reward to the maximum possible (3 of max 10 becomes 0.3), or number Points - - - - Penalty - - Low - - - Medium - - - High - - - # - Absolute monetary values in some currency, for example $1, or the ratio of the reward to the maximum possible (3 of max 10 becomes 0.3), or number of Points - - - - Error - - Self originated - - - Other originated - - Human - - - Non-human - - - - Expected - - - Unexpected - - - Planned - The error feedback was given regardless of the validity of subject response as in a yoked design - - - - Threat - - To self - - - To others - - Close - - - - - Warning - As in a warning message that you are getting too close to the shoulder in a driving task - - - Oddball - Unexpected or infrequent - - One stimulus - Only oddballs are present but no frequent stimuli exist. See http://dx.doi.org/10.1016/0167-8760(96)00030-X - - - Two stimuli - There are non-targets and targets. See http://dx.doi.org/10.1016/0167-8760(96)00030-X - - - Three stimuli - There are regular non-targets and targets and infrequent non-targets, see http://dx.doi.org/10.1016/0167-8760(96)00030-X - - - Silent counting - - - Button pressing for target - - - Button pressing for all - - - - Target - Something the subject is looking for - - - Non-target - Make sure to tag Expected if the Non-target is frequent - - - Novel - Genuinely novel such as an event occurring once or so per experiment - - - Expected - Of low information value, for example frequent Non-targets in an RSVP paradigm - - Standard - - - Distractor - - - - Valid - Something that is understood to be valid such as an ID matches the person being displayed and it has all the correct information - - - Invalid - Something that is understood to not be valid such as like an ID with an impossible date-of-birth, or a photo not matching the person presenting it - - - Congruence - - Congruent - Like in Stroop paradigm when blue colored text displays the word blue - - - Incongruent - Like in Stroop paradigm whena blue colored text reading displays the word red - - - Temporal synchrony - - Synchronous - When a mouse click sound happens right after clicking it - - - Asynchronous - When a mouse click sound happens with significant delay which give could the person a strange feeling. Or if in a movie the sound of the explosion is heard before it appears visually. - - - - - Feedback - - Correct - Confirm something went well and last action was correct - - - Incorrect - Confirm something went wrong and last action was incorrect - - - Non-informative - Feedback that provides no information in regards to correct, incorrect, etc. - - - Expected - Feedback was expected as in a positive feedback after a response that was expected to be correct. - - - Unexpected - Feedback was unexpected as when positive feedback was received when response was expected to be incorrect. - - - On accuracy - Feedback was provided by evaluating response accuracy - - - On reaction time - Feedback was provided by evaluating subject reaction time - - - To self - Default - - - To other - Observed feedback to another person such as in a social paradigm - - - Deterministic - Feedback has a fixed relationship to what happened before - - - Stochastic - Feedback is non-deterministic and does not have fixed relationship with what has happened before in the experiment - - - False feedback - Feedback that was not honest for example as in feedback of correct on an incorrect response or vice versa - - Negative - Negative feedback was provided when it was not deserved - - - Positive - Positive feedback was provided when it was not deserved - - - - - Cue - An indicator of a future event, e.g. a sound cue that in 2-5 seconds a perturbation in driving will occur. Use (... Participant/Effect/Cognitive/Cue ~ hed tags for the event to follow, or main aspect of the event to follow) syntax. - - Constant delay - The cue is for an event that will happen after a constant delay. - - # - The delay, e.g. in seconds. - - - - Variable delay - The cue is for an event that will happen after a variable delay. - - # - The interval, e.g. between 2-5 seconds, of the variable delay. - - - - - - Visual - - Foveal - - - Peripheral - - - Perturbation - Sudden movement or perturbation of the virtual environment in a car driving or other scenario - - - - Auditory - - Stereo - - - Mono - - Left - - - Right - - - - - TMS - - With SPGS - SPGS stands for spatial position guiding system - - - Without SPGS - SPGS stands for spatial position guiding system - - - - Tactile - - Vibration - - - Acupuncture - - - Eye puff - - - Swab - Mouth swab - - - - Vestibular - - Shaking - being shaken or jerked around - - - - Pain - - Heat - - - Cold - - - Pressure - - - Electric shock - - - Laser-evoked - - - - Taste - - - Smell - - - Body part - - Whole Body - - - Eye - - - Arm - - Hand - - Finger - - Index - - - Thumb - - - Ring - - - Middle - - - Small - Pinkie or little finger - - - - - - Leg - - Feet - - Toes - - - - - Head - - Face - - Eyebrow - - - Lip - - - Forehead - - - Mouth - - - Nose - - - Chin - - - Cheek - - - - - Torso - - - - - State - - Level of consciousness - - Awake - - - Drowsy - - - Sleep - - Stage - - # - a number between 1 to 4, or REM - - - - - Drunk - - - Anesthesia - - - Locked-in - - - Coma - - - Vegetative - - - Brain-dead - - - - Emotion - - Awe - - - Frustration - - - Joy - - - Anger - - - Happiness - - - Sadness - - - Love - - - Fear - - - Compassion - - - Jealousy - - - Contentment - - - Grief - - - Relief - - - Excitement - - - Disgust - - - Neutral - None of the above - - - - Sense of community - Primed to have an emotion such as patriotism - - # - SCI stands for Sense of Community Index - - - - Sense of social justice - - Distributive - - - Poverty - - - Inequality - - - Procedural - - - Interpersonal - - - Informational - - - - Stress level - - # - A number between 0 and 1 - - - - Task load - - # - A number between 0 and 1 - - - - Under time pressure - - Response window - - # - Default time is seconds - - - - Competitive - Subject is competing against an opponent as for example when the faster respondent wins - - - - Social interaction - Social - - Pseudo - Instructed so but actually not as when the other person may not exist in real world such as the case of a computer program agent - - - - Passive - There is a stimulus presentation but no behavioral measurements are collected from the subject. Subject is instructed not to make any behavioral outputs for example when told to carefully watch/listen/sense. The resting state is not considered passive. - - - Resting - State when there is no stimulus presentation and no behavioral outputs - - - Attention - - Top-down - Instructed to pay attention to something explicitly - - - Bottom-up - something captures your attention, like a big bang or your name - - Orienting - The lower state of the bottom-up or the pre-bottom up state - - - - Covert - Implicit - - - Overt - Explicit - - - Selective - If you have two circles but asked to pay attention to only one of them - - Divided - Attending to more than one object or location - - - - Focused - Paying a lot of attention - - - Sustained - Paying attention for a continuous time - - - Auditory - - - Visual - - - Tactile - - - Taste - - - Smell - - - To a location - Spatial -- use the location attribute to specify to where the attention is directed - - - Arousal - - - Alerting - Keeping the arousal up in order to respond quickly - - - Drowsy - - - Excited - - - Neutral - - - - - - Experiment context - Describes the context of the whole experiment or large portions of it and also includes tags that are common across all events - - # - Add common tags across all stimuli/ and/or responses here if all experimental events share /State/Drowsy, you can place it here instead of tagging each event individually - - - With chin rest - - - Sitting - - - Standing - - - Prone - As in on a bed - - - Running - - Treadmill - - - - Walking - - Treadmill - - - - Indoors - Default - - Clinic - Recording in a clinical setting such as in a hospital or medical office - - - Dim Room - - - - Outdoors - - Terrain - - Grass - - - Uneven - - - Boardwalk - - - Dirt - - - Leaves - - - Mud - - - Woodchip - - - Rocky - - - Gravel - - - Downhill - - - Uphill - - - - - Motion platform - Subject is on a motion platform such as one that produces simulated car movements - - - Fixed screen - - Distance - Assuming static subject - - # - Distance from subject eyes to the presentation screen for 30 cm from subject eyes to the monitor - - - - Width resolution - - # - Default units are pixels - - - - Height resolution - - # - Default units are pixels - - - - - Real world - - - Virtual world - - - - Custom - This node can be used to organize events in an alternative (parallel) hierarchy. You can define your custom tags and hierarchies without any restriction under this node. These tags will still be matched to each other as for example /Custom/Dance/Waltz is considered a subtype of /Custom/DanceExample. - - - HED - Hierarchical Event Descriptor - - # - HED specification version number: normally there is no need to specify the version number in the HED string since it will be matched by default to the most recent compliant version, but this tag can be used to specify the exact HED version the HED string was based on. - - - - Paradigm - See Tasks in http://www.cognitiveatlas.org/tasks and CogPo definitions of paradigms - - Action imitation task - - - Action observation task - - - Acupuncture task - - - Adult attachment interview - - - Alternating runs paradigm - - - Animal naming task - - - Antisaccade-prosaccade task - - - Attention networks test - - - Attentional blink task - - - Audio-visual target-detection task - - - Autism diagnostic observation schedule - - - Ax-cpt task - - - Backward digit span task - - - Backward masking - - - Balloon analogue risk task - BART - - - Behavioral investment allocation strategy - BIAS - - - Behavioral rating inventory of executive function - - - Benton facial recognition test - - - Birmingham object recognition battery - - - Block design test - - - Block tapping test - - - Boston naming test - - - Braille reading task - - - Breath-holding - - - Breathhold paradigm - - - Brixton spatial anticipation test - - - California verbal learning test - - - California verbal learning test-ii - - - Cambridge face memory test - - - Cambridge gambling task - - - Cambridge neuropsychological test automated battery - - - Catbat task - - - Category fluency test - - - Cattell culture fair intelligence test - - - Chewing-swallowing - - - Chimeric animal stroop task - - - Choice reaction time task - - - Choice task between risky and non-risky options - - - Classical conditioning - - - Clinical evaluation of language fundamentals-3 - - - Color trails test - - - Color-discrimination task - - - Color-word stroop task - - - Complex span test - - - Conditional stop signal task - - - Conditioning paradigm - - Behavioral conditioning paradigm - - - Classical conditioning paradigm - - - - Continuous performance task - - - Continuous recognition paradigm - - - Counting stroop task - - - Counting-calculation - - - Cued explicit recognition - - - Cups task - - - Deception task - - - Deductive reasoning paradigm - - - Deductive reasoning task - - - Delayed discounting task - - - Delayed match to sample task - - - Delayed nonmatch to sample task - - - Delayed recall test - - - Delayed response task - - Delayed matching to sample paradigm - - Sternberg paradigm - - - - - Devils task - - - Dichotic listening task - - - Digit cancellation task - - - Digit span task - - - Digit-symbol coding test - - - Directed forgetting task - - - Divided auditory attention - - - Divided auditory attention paradigm - - - Doors and people test - - - Dot pattern expectancy task - - - Drawing - - - Drawing paradigm - - - Dual-task paradigm - - - Early social communications scales - - - Eating paradigm - - - Eating-drinking - - - Embedded figures test - - - Emotional regulation task - - - Encoding paradigm - - - Encoding task - - - Episodic recall - - - Episodic recall paradigm - - - Eriksen flanker task - - - Extradimensional shift task - - - Eye Saccade paradigm - - Anti saccade paradigm - - - Simple saccade paradigm - - - - Face monitor-discrimination - - - Face n-back task - - - Fagerstrom test for nicotine dependence - - - Film viewing - - - Finger tapping task - - - Fixation task - - - Flashing checkerboard - - - Flexion-extension - - - Forward digit span task - - - Free word list recall - - - Glasgow coma scale - - - Go-no-go task - - - Grasping task - - - Gray oral reading test - 4 - - - Haptic illusion task - - - Hayling sentence completion test - - - Heat sensitization-adaptation - - - Heat stimulation - - - Hooper visual organization test - - - ID screening - Visual examination of multiple fields of an ID or document to detect invalid or suspicious fields. For example at a security checkpoint. - - - Imagined emotion - - - Imagined movement - - - Imagined objects-scenes - - - Instructed movement - - - Immediate recall test - - - Inductive reasoning aptitude - - - International affective picture system - - - Intradimensional shift task - - - Ishihara plates for color blindness - - - Isometric force - - - Item recognition paradigm - - Serial item recognition paradigm - - - - Item recognition task - - - Kanizsa figures - - - Keep-track task - - - Letter comparison - - - Letter fluency test - - - Letter naming task - - - Letter number sequencing - - - Lexical decision task - - - Listening span task - - - Macauthur communicative development inventory - - - Machine failure detection task - - - Matching familiar figures test - - - Matching pennies game - - - Maudsley obsessive compulsive inventory - - - Mechanical stimulation - - - Memory span test - - - Mental rotation task - - - Micturition task - - - Mini mental state examination - - - Mirror tracing test - - - Mismatch negativity paradigm - - - Mixed gambles task - - - Modified erikson scale of communication attitudes - - - Morris water maze - - - Motor sequencing task - - - Music comprehension-production - - - N-back task - - Letter n-back task - - - - Naming - - Covert - - - Overt - - - - Nine-hole peg test - - - Non-choice task to study expected value and uncertainty - - - Non-painful electrical stimulation - - - Non-painful thermal stimulation - - - Nonword repetition task - - - Object alternation task - - - Object-discrimination task - - - Oculomotor delayed response - - - Oddball discrimination paradigm - - Auditory oddball paradigm - - - Visual oddball paradigm - - Rapid serial visual presentation - - - - - Oddball task - - - Olfactory monitor-discrimination - - - Operation span task - - - Orthographic discrimination - - - Paced auditory serial addition test - - - Pain monitor-discrimination task - - - Paired associate learning - - - Paired associate recall - - - Pantomime task - - - Parrott scale - - - Passive listening - - - Passive viewing - - - Pattern comparison - - - Perturbed driving - - - Phonological discrimination - - - Picture naming task - - - Picture set test - - - Picture-word stroop task - - - Pitch monitor-discrimination - - - Pointing - - - Porteus maze test - - - Positive and negative affect scale - - - Posner cueing task - - - Probabilistic classification task - - - Probabilistic gambling task - - - Probabilistic reversal learning - - - Pseudoword naming task - - - Psychomotor vigilance task - - - Pursuit rotor task - - - Pyramids and palm trees task - - - Rapid automatized naming test - - - Rapid serial object transformation - - - Reading - Covert - - - Reading - Overt - - - Reading paradigm - - Covert braille reading paradigm - - - Covert visual reading paradigm - - - - Reading span task - - - Recitation-repetition - Covert - - - Recitation-repetition - Overt - - - Remember-know task - - - Response mapping task - - - Rest - - Rest eyes open - - - Rest eyes closed - - - - Retrieval-induced forgetting task - - - Reversal learning task - - - Reward task - - - Rey auditory verbal learning task - - - Rey-ostereith complex figure test - - - Reynell developmental language scales - - - Rhyme verification task - - - Risky gains task - - - Rivermead behavioural memory test - - - - - time - - second - s - day - minute - hour - - - - dateTime - - YYYY-MM-DDThh:mm:ss - - - - clockTime - - hour:min - hour:min:sec - - - - frequency - - hertz - Hz - - - - angle - - radian - rad - degree - - - - physicalLength - - metre - m - foot - mile - - - - pixels - - pixel - px - - - - area - - m^2 - px^2 - pixel^2 - - - - volume - - m^3 - - - - speed - - m-per-s - mph - kph - - - - acceleration - - m-per-s^2 - - - - jerk - - m-per-s^3 - - - - intensity - - dB - - - - luminousIntensity - - candela - cd - - - - memorySize - - byte - B - - - - currency - - dollar - $ - point - fraction - - - - - - deca - SI unit multiple representing 10^1 - - - da - SI unit multiple representing 10^1 - - - hecto - SI unit multiple representing 10^2 - - - h - SI unit multiple representing 10^2 - - - kilo - SI unit multiple representing 10^3 - - - k - SI unit multiple representing 10^3 - - - mega - SI unit multiple representing 10^6 - - - M - SI unit multiple representing 10^6 - - - giga - SI unit multiple representing 10^9 - - - G - SI unit multiple representing 10^9 - - - tera - SI unit multiple representing 10^12 - - - T - SI unit multiple representing 10^12 - - - peta - SI unit multiple representing 10^15 - - - P - SI unit multiple representing 10^15 - - - exa - SI unit multiple representing 10^18 - - - E - SI unit multiple representing 10^18 - - - zetta - SI unit multiple representing 10^21 - - - Z - SI unit multiple representing 10^21 - - - yotta - SI unit multiple representing 10^24 - - - Y - SI unit multiple representing 10^24 - - - deci - SI unit submultiple representing 10^-1 - - - d - SI unit submultiple representing 10^-1 - - - centi - SI unit submultiple representing 10^-2 - - - c - SI unit submultiple representing 10^-2 - - - milli - SI unit submultiple representing 10^-3 - - - m - SI unit submultiple representing 10^-3 - - - micro - SI unit submultiple representing 10^-6 - - - u - SI unit submultiple representing 10^-6 - - - nano - SI unit submultiple representing 10^-9 - - - n - SI unit submultiple representing 10^-9 - - - pico - SI unit submultiple representing 10^-12 - - - p - SI unit submultiple representing 10^-12 - - - femto - SI unit submultiple representing 10^-15 - - - f - SI unit submultiple representing 10^-15 - - - atto - SI unit submultiple representing 10^-18 - - - a - SI unit submultiple representing 10^-18 - - - zepto - SI unit submultiple representing 10^-21 - - - z - SI unit submultiple representing 10^-21 - - - yocto - SI unit submultiple representing 10^-24 - - - y - SI unit submultiple representing 10^-24 - - - Note: This is the new version of the .mediawiki designed to support prologues and epilogues. - diff --git a/hedcode/data/schema_data/HED8.0.0.xml b/hedcode/data/schema_data/HED8.0.0.xml deleted file mode 100644 index 24a5241a..00000000 --- a/hedcode/data/schema_data/HED8.0.0.xml +++ /dev/null @@ -1,6524 +0,0 @@ - - - This schema is the first official release that includes an xsd and requires unit class, unit modifier, value class, schema attribute and property sections. - - - - Event - Something that happens at a given time and (typically) place. Elements of this tag subtree designate the general category in which an event falls. - - suggestedTag - Task-property - - - Sensory-event - Something perceivable by the participant. An event meant to be an experimental stimulus should include the tag Task-property/Task-event-role/Experimental-stimulus. - - suggestedTag - Task-event-role - Attribute/Sensory - - - - Agent-action - Any action engaged in by an agent (see the Agent subtree for agent categories). A participant response to an experiment stimulus should include the tag Agent-property/Agent-task-role/Experiment-participant. - - suggestedTag - Task-event-role - Agent - - - - Data-feature - An event marking the occurrence of a data feature such as an interictal spike or alpha burst that is often added post hoc to the data record. - - suggestedTag - Data-property - - - - Experiment-control - An event pertaining to the physical control of the experiment during its operation. - - - Experiment-procedure - An event indicating an experimental procedure, as in performing a saliva swab during the experiment or administering a survey. - - - Experiment-structure - An event specifying a change-point of the structure of experiment. This event is typically used to indicate a change in experimental conditions or tasks. - - - Measurement-event - A discrete measure returned by an instrument. - - suggestedTag - Data-property - - - - - Agent - Someone or something that takes an active role or produces a specified effect.The role or effect may be implicit. Being alive or performing an activity such as a computation may qualify something to be an agent. An agent may also be something that simulates something else. - - suggestedTag - Agent-property - - - Animal-agent - An agent that is an animal. - - - Avatar-agent - An agent associated with an icon or avatar representing another agent. - - - Controller-agent - An agent experiment control software or hardware. - - - Human-agent - A person who takes an active role or produces a specified effect. - - - Robotic-agent - An agent mechanical device capable of performing a variety of often complex tasks on command or by being programmed in advance. - - - Software-agent - An agent computer program. - - - - Action - Do something. - - extensionAllowed - - - Communicate - Convey knowledge of or information about something. - - Communicate-gesturally - Communicate nonverbally using visible bodily actions, either in place of speech or together and in parallel with spoken words. Gestures include movement of the hands, face, or other parts of the body. - - relatedTag - Move-face - Move-upper-extremity - - - Clap-hands - Strike the palms of against one another resoundingly, and usually repeatedly, especially to express approval. - - - Clear-throat - Cough slightly so as to speak more clearly, attract attention, or to express hesitancy before saying something awkward. - - relatedTag - Move-face - Move-head - - - - Frown - Express disapproval, displeasure, or concentration, typically by turning down the corners of the mouth. - - relatedTag - Move-face - - - - Grimace - Make a twisted expression, typically expressing disgust, pain, or wry amusement. - - relatedTag - Move-face - - - - Nod-head - Tilt head in alternating up and down arcs along the sagittal plane. It is most commonly, but not universally, used to indicate agreement, acceptance, or acknowledgement. - - relatedTag - Move-head - - - - Pump-fist - Raise with fist clenched in triumph or affirmation. - - relatedTag - Move-upper-extremity - - - - Raise-eyebrows - Move eyebrows upward. - - relatedTag - Move-face - Move-eyes - - - - Shake-fist - Clench hand into a fist and shake to demonstrate anger. - - relatedTag - Move-upper-extremity - - - - Shake-head - Turn head from side to side as a way of showing disagreement or refusal. - - relatedTag - Move-head - - - - Shhh - Place finger over lips and possibly uttering the syllable shhh to indicate the need to be quiet. - - relatedTag - Move-upper-extremity - - - - Shrug - Lift shoulders up towards head to indicate a lack of knowledge about a particular topic. - - relatedTag - Move-upper-extremity - Move-torso - - - - Smile - Form facial features into a pleased, kind, or amused expression, typically with the corners of the mouth turned up and the front teeth exposed. - - relatedTag - Move-face - - - - Spread-hands - Spread hands apart to indicate ignorance. - - relatedTag - Move-upper-extremity - - - - Thumbs-down - Extend the thumb downward to indicate disapproval. - - relatedTag - Move-upper-extremity - - - - Thumb-up - Extend the thumb upward to indicate approval. - - relatedTag - Move-upper-extremity - - - - Wave - Raise hand and move left and right, as a greeting or sign of departure. - - relatedTag - Move-upper-extremity - - - - Widen-eyes - Open eyes and possibly with eyebrows lifted especially to express surprise or fear. - - relatedTag - Move-face - Move-eyes - - - - Wink - Close and open one eye quickly, typically to indicate that something is a joke or a secret or as a signal of affection or greeting. - - relatedTag - Move-face - Move-eyes - - - - - Communicate-musically - Communicate using music. - - Hum - Make a low, steady continuous sound like that of a bee. Sing with the lips closed and without uttering speech. - - - Play-instrument - Make musical sounds using an instrument. - - - Sing - Produce musical tones by means of the voice. - - - Vocalize - Utter vocal sounds. - - - Whistle - Produce a shrill clear sound by forcing breath out or air in through the puckered lips. - - - - Communicate-vocally - Communicate using mouth or vocal cords. - - Cry - Shed tears associated with emotions, usually sadness but also joy or frustration. - - - Groan - Make a deep inarticulate sound in response to pain or despair. - - - Laugh - Make the spontaneous sounds and movements of the face and body that are the instinctive expressions of lively amusement and sometimes also of contempt or derision. - - - Scream - Make loud, vociferous cries or yells to express pain, excitement, or fear. - - - Shout - Say something very loudly. - - - Sigh - Emit a long, deep, audible breath expressing sadness, relief, tiredness, or a similar feeling. - - - Speak - Communicate using spoken language. - - - Whisper - Speak very softly using breath without vocal cords. - - - - - Move - Move in a specified direction or manner. Change position or posture. - - Breathe - Inhale or exhale during respiration. - - Blow - Expel air through pursed lips. - - - Cough - Suddenly and audibly expel air from the lungs through a partially closed glottis, preceded by inhalation. - - - Exhale - Blow out or expel breath. - - - Hiccup - Involuntarily spasm the diaphragm and respiratory organs, with a sudden closure of the glottis and a characteristic sound like that of a cough. - - - Hold-breath - Interrupt normal breathing by ceasing to inhale or exhale. - - - Inhale - Draw in with the breath through the nose or mouth. - - - Sneeze - Suddenly and violently expel breath through the nose and mouth. - - - Sniff - Draw in air audibly through the nose to detect a smell, to stop it from running, or to express contempt. - - - - Move-body - Move entire body. - - Bend - Move body in a bowed or curved manner. - - - Dance - Perform a purposefully selected sequences of human movement often with aesthetic or symbolic value. Move rhythmically to music, typically following a set sequence of steps. - - - Fall-down - Lose balance and collapse. - - - Flex - Cause a muscle to stand out by contracting or tensing it. Bend a limb or joint. - - - Jerk - Make a quick, sharp, sudden movement. - - - Lie-down - Move to a horizontal or resting position. - - - Recover-balance - Return to a stable, upright body position. - - - Sit-down - Move from a standing to a sitting position. - - - Sit-up - Move from lying down to a sitting position. - - - Stand-up - Move from a sitting to a standing position. - - - Stretch - Straighten or extend body or a part of body to its full length, typically so as to tighten muscles or in order to reach something. - - - Shudder - Tremble convulsively, sometimes as a result of fear or revulsion. - - - Stumble - Trip or momentarily lose balance and almost fall. - - - Turn - Change or cause to change direction. - - - - Move-body-part - Move one part of a body. - - Move-eyes - Move eyes. - - Blink - Shut and open the eyes quickly. - - - Close-eyes - Lower and keep eyelids in a closed position. - - - Fixate - Direct eyes to a specific point or target. - - - Inhibit-blinks - Purposely prevent blinking. - - - Open-eyes - Raise eyelids to expose pupil. - - - Saccade - Move eyes rapidly between fixation points. - - - Squint - Squeeze one or both eyes partly closed in an attempt to see more clearly or as a reaction to strong light. - - - Stare - Look fixedly or vacantly at someone or something with eyes wide open. - - - - Move-face - Move the face or jaw. - - Bite - Seize with teeth or jaws an object or organism so as to grip or break the surface covering. - - - Burp - Noisily release air from the stomach through the mouth. Belch. - - - Chew - Repeatedly grinding, tearing, and or crushing with teeth or jaws. - - - Gurgle - Make a hollow bubbling sound like that made by water running out of a bottle. - - - Swallow - Cause or allow something, especially food or drink to pass down the throat. - - Gulp - Swallow quickly or in large mouthfuls, often audibly, sometimes to indicate apprehension. - - - - Yawn - Take a deep involuntary inhalation with the mouth open often as a sign of drowsiness or boredom. - - - - Move-head - Move head. - - Lift-head - Tilt head back lifting chin. - - - Lower-head - Move head downward so that eyes are in a lower position. - - - Turn-head - Rotate head horizontally to look in a different direction. - - - - Move-lower-extremity - Move leg and/or foot. - - Curl-toes - Bend toes sometimes to grip. - - - Hop - Jump on one foot. - - - Jog - Run at a trot to exercise. - - - Jump - Move off the ground or other surface through sudden muscular effort in the legs. - - - Kick - Strike out or flail with the foot or feet. Strike using the leg, in unison usually with an area of the knee or lower using the foot. - - - Pedal - Move by working the pedals of a bicycle or other machine. - - - Press-foot - Move by pressing foot. - - - Run - Travel on foot at a fast pace. - - - Step - Put one leg in front of the other and shift weight onto it. - - Heel-strike - Strike the ground with the heel during a step. - - - Toe-off - Push with toe as part of a stride. - - - - Trot - Run at a moderate pace, typically with short steps. - - - Walk - Move at a regular pace by lifting and setting down each foot in turn never having both feet off the ground at once. - - - - Move-torso - Move body trunk. - - - Move-upper-extremity - Move arm, shoulder, and/or hand. - - Drop - Let or cause to fall vertically. - - - Grab - Seize suddenly or quickly. Snatch or clutch. - - - Grasp - Seize and hold firmly. - - - Hold-down - Prevent someone or something from moving by holding them firmly. - - - Lift - Raising something to higher position. - - - Make-fist - Close hand tightly with the fingers bent against the palm. - - - Point - Draw attention to something by extending a finger or arm. - - - Press - Apply pressure to something to flatten, shape, smooth or depress it. This action tag should be used to indicate key presses and mouse clicks. - - relatedTag - Push - - - - Push - Apply force in order to move something away. Use Press to indicate a key press or mouse click. - - relatedTag - Press - - - - Reach - Stretch out your arm in order to get or touch something. - - - Release - Make available or set free. - - - Retract - Draw or pull back. - - - Scratch - Drag claws or nails over a surface or on skin. - - - Snap-fingers - Make a noise by pushing second finger hard against thumb and then releasing it suddenly so that it hits the base of the thumb. - - - Touch - Come into or be in contact with. - - - - - - Perceive - Produce an internal, conscious image through stimulating a sensory system. - - Hear - Give attention to a sound. - - - See - Direct gaze toward someone or something or in a specified direction. - - - Smell - Inhale in order to ascertain an odor or scent. - - - Taste - Sense a flavor in the mouth and throat on contact with a substance. - - - Sense-by-touch - Sense something through receptors in the skin. - - - - Perform - Carry out or accomplish an action, task, or function. - - Close - Act as to blocked against entry or passage. - - - Collide-with - Hit with force when moving. - - - Halt - Bring or come to an abrupt stop. - - - Modify - Change something. - - - Open - Widen an aperture, door, or gap, especially one allowing access to something. - - - Operate - Control the functioning of a machine, process, or system. - - - Play - Engage in activity for enjoyment and recreation rather than a serious or practical purpose. - - - Read - Interpret something that is written or printed. - - - Repeat - Make do or perform again. - - - Rest - Be inactive in order to regain strength, health, or energy. - - - Write - Communicate or express by means of letters or symbols written or imprinted on a surface. - - - - Think - Direct the mind toward someone or something or use the mind actively to form connected ideas. - - Allow - Allow access to something such as allowing a car to pass. - - - Attend-to - Focus mental experience on specific targets. - - - Count - Tally items either silently or aloud. - - - Deny - Refuse to give or grant something requested or desired by someone. - - - Detect - Discover or identify the presence or existence of something. - - - Discriminate - Recognize a distinction. - - - Encode - Convert information or an instruction into a particular form. - - - Evade - Escape or avoid, especially by cleverness or trickery. - - - Generate - Cause something, especially an emotion or situation to arise or come about. - - - Identify - Establish or indicate who or what someone or something is. - - - Imagine - Form a mental image or concept of something. - - - Judge - Evaluate evidence to make a decision or form a belief. - - - Learn - Adaptively change behavior as the result of experience. - - - Memorize - Adaptively change behavior as the result of experience. - - - Plan - Think about the activities required to achieve a desired goal. - - - Predict - Say or estimate that something will happen or will be a consequence of something without having exact informaton. - - - Recognize - Identify someone or something from having encountered them before. - - - Respond - React to something such as a treatment or a stimulus. - - - Recall - Remember information by mental effort. - - - Switch-attention - Transfer attention from one focus to another. - - - Track - Follow a person, animal, or object through space or time. - - - - - Item - An independently existing thing (living or nonliving). - - extensionAllowed - - - Biological-item - An entity that is biological, that is related to living organisms. - - Anatomical-item - A biological structure, system, fluid or other substance excluding single molecular entities. - - Body-part - Any part of an organism. - - Head - The upper part of the human body, or the front or upper part of the body of an animal, typically separated from the rest of the body by a neck, and containing the brain, mouth, and sense organs. - - Hair - The filamentous outgrowth of the epidermis. - - - Ear - A sense organ needed for the detection of sound and for establishing balance. - - - Face - The anterior portion of the head extending from the forehead to the chin and ear to ear. The facial structures contain the eyes, nose and mouth, cheeks and jaws. - - Cheek - The fleshy part of the face bounded by the eyes, nose, ear, and jaw line. - - - Chin - The part of the face below the lower lip and including the protruding part of the lower jaw. - - - Eye - The organ of sight or vision. - - - Eyebrow - The arched strip of hair on the bony ridge above each eye socket. - - - Forehead - The part of the face between the eyebrows and the normal hairline. - - - Lip - Fleshy fold which surrounds the opening of the mouth. - - - Nose - A structure of special sense serving as an organ of the sense of smell and as an entrance to the respiratory tract. - - - Mouth - The proximal portion of the digestive tract, containing the oral cavity and bounded by the oral opening. - - - Teeth - The hard bonelike structures in the jaws. A collection of teeth arranged in some pattern in the mouth or other part of the body. - - - - - Lower-extremity - Refers to the whole inferior limb (leg and/or foot). - - Ankle - A gliding joint between the distal ends of the tibia and fibula and the proximal end of the talus. - - - Calf - The fleshy part at the back of the leg below the knee. - - - Foot - The structure found below the ankle joint required for locomotion. - - Big-toe - The largest toe on the inner side of the foot. - - - Heel - The back of the foot below the ankle. - - - Instep - The part of the foot between the ball and the heel on the inner side. - - - Little-toe - The smallest toe located on the outer side of the foot. - - - Toes - The terminal digits of the foot. - - - - Knee - A joint connecting the lower part of the femur with the upper part of the tibia. - - - Shin - Front part of the leg below the knee. - - - Thigh - Upper part of the leg between hip and knee. - - - - Torso - The body excluding the head and neck and limbs. - - Torso-back - The rear surface of the human body from the shoulders to the hips. - - - Buttocks - The round fleshy parts that form the lower rear area of a human trunk. - - - Torso-chest - The anterior side of the thorax from the neck to the abdomen. - - - Gentalia - The external organs of reproduction. - - - Hip - The lateral prominence of the pelvis from the waist to the thigh. - - - Waist - The abdominal circumference at the navel. - - - - Upper-extremity - Refers to the whole superior limb (shoulder, arm, elbow, wrist, hand). - - Elbow - A type of hinge joint located between the forearm and upper arm. - - - Forearm - Lower part of the arm between the elbow and wrist. - - - Hand - The distal portion of the upper extremity. It consists of the carpus, metacarpus, and digits. - - Finger - Any of the digits of the hand. - - Index-finger - The second finger from the radial side of the hand, next to the thumb. - - - Little-finger - The fifth and smallest finger from the radial side of the hand. - - - Middle-finger - The middle or third finger from the radial side of the hand. - - - Ring-finger - The fourth finger from the radial side of the hand. - - - Thumb - The thick and short hand digit which is next to the index finger in humans. - - - - Palm - The part of the inner surface of the hand that extends from the wrist to the bases of the fingers. - - - Knuckles - A part of a finger at a joint where the bone is near the surface, especially where the finger joins the hand. - - - - Shoulder - Joint attaching upper arm to trunk. - - - Upper-arm - Portion of arm between shoulder and elbow. - - - Wrist - A joint between the distal end of the radius and the proximal row of carpal bones. - - - - - - Organism - A living entity, more specifically a biological entity that consists of one or more cells and is capable of genomic replication (independently or not). - - Animal - A living organism that has membranous cell walls, requires oxygen and organic foods, and is capable of voluntary movement. - - - Human - The bipedal primate mammal Homo sapiens. - - - Plant - Any living organism that typically synthesizes its food from inorganic substances and possesses cellulose cell walls. - - - - - Language-item - An entity related to a systematic means of communicating by the use of sounds, symbols, or gestures. - - suggestedTag - Attribute/Sensory - - - Character - A mark or symbol used in writing. - - - Clause - A unit of grammatical organization next below the sentence in rank, usually consisting of a subject and predicate. - - - Glyph - A hieroglyphic character, symbol, or pictograph. - - - Nonword - A group of letters or speech sounds that looks or sounds like a word but that is not accepted as such by native speakers. - - - Paragraph - A distinct section of a piece of writing, usually dealing with a single theme. - - - Phoneme - A speech sound that is distinguished by the speakers of a particular language. - - - Phrase - A phrase is a group of words functioning as a single unit in the syntax of a sentence. - - - Sentence - A set of words that is complete in itself, conveying a statement, question, exclamation, or command and typically containing an explicit or implied subject and a predicate containing a finite verb. - - - Syllable - A unit of spoken language larger than a phoneme. - - - Textblock - A block of text. - - - Word - A word is the smallest free form (an item that may be expressed in isolation with semantic or pragmatic content) in a language. - - - - Object - Something perceptible by one or more of the senses, especially by vision or touch. A material thing. - - suggestedTag - Attribute/Sensory - - - Geometric-object - An object or a representation that has structure and topology in space. - - Pattern - An arrangement of objects, facts, behaviors, or other things which have scientific, mathematical, geometric, statistical, or other meaning. - - Dots - A small round mark or spot. - - - LED-pattern - A pattern created by lighting selected members of a fixed light emitting diode array. - - - - 2D-shape - A planar, two-dimensional shape. - - Clockface - The dial face of a clock. A location identifier based on clockface numbering or anatomic subregion. - - - Cross - A figure or mark formed by two intersecting lines crossing at their midpoints. - - - Dash - A horizontal stroke in writing or printing to mark a pause or break in sense or to represent omitted letters or words. - - - Ellipse - A closed plane curve resulting from the intersection of a circular cone and a plane cutting completely through it, especially a plane not parallel to the base. - - Circle - A ring-shaped structure with every point equidistant from the center. - - - - Rectangle - A parallelogram with four right angles. - - Square - A square is a special rectangle with four equal sides. - - - - Single-point - A point is a geometric entity that is located in a zero-dimensional spatial region and whose position is defined by its coordinates in some coordinate system. - - - Star - A conventional or stylized representation of a star, typically one having five or more points. - - - Triangle - A three-sided polygon. - - - - 3D-shape - A geometric three-dimensional shape. - - Box - A square or rectangular vessel, usually made of cardboard or plastic. - - Cube - A solid or semi-solid in the shape of a three dimensional square. - - - - Cone - A shape whose base is a circle and whose sides taper up to a point. - - - Cylinder - A surface formed by circles of a given radius that are contained in a plane perpendicular to a given axis, whose centers align on the axis. - - - Ellipsoid - A closed plane curve resulting from the intersection of a circular cone and a plane cutting completely through it, especially a plane not parallel to the base. - - Sphere - A solid or hollow three-dimensional object bounded by a closed surface such that every point on the surface is equidistant from the center. - - - - Pyramid - A polyhedron of which one face is a polygon of any number of sides, and the other faces are triangles with a common vertex. - - - - - Ingestible-object - Something that can be taken into the body by the mouth for digestion or absorption. - - - Man-made-object - Something constructed by human means. - - Building - A structure that has a roof and walls and stands more or less permanently in one place. - - Room - An area within a building enclosed by walls and floor and ceiling. - - - Roof - A roof is the covering on the uppermost part of a building which provides protection from animals and weather, notably rain, but also heat, wind and sunlight. - - - Entrance - The means or place of entry. - - - Attic - A room or a space immediately below the roof of a building. - - - Basement - The part of a building that is wholly or partly below ground level. - - - - Clothing - A covering designed to be worn on the body. - - - Device - An object contrived for a specific purpose. - - Assistive-device - A device that help an individual accomplish a task. - - Glasses - Frames with lenses worn in front of the eye for vision correction, eye protection, or protection from UV rays. - - - Writing-device - A device used for writing. - - Pen - A common writing instrument used to apply ink to a surface for writing or drawing. - - - Pencil - An implement for writing or drawing that is constructed of a narrow solid pigment core in a protective casing that prevents the core from being broken or marking the hand. - - - - - Computing-device - An electronic device which take inputs and processes results from the inputs. - - Cellphone - A telephone with access to a cellular radio system so it can be used over a wide area, without a physical connection to a network. - - - Desktop-computer - A computer suitable for use at an ordinary desk. - - - Laptop-computer - A computer that is portable and suitable for use while traveling. - - - Tablet-computer - A small portable computer that accepts input directly on to its screen rather than via a keyboard or mouse. - - - - Engine - A motor is a machine designed to convert one or more forms of energy into mechanical energy. - - - IO-device - Hardware used by a human (or other system) to communicate with a computer. - - Input-device - A piece of equipment used to provide data and control signals to an information processing system such as a computer or information appliance. - - Computer-mouse - A hand-held pointing device that detects two-dimensional motion relative to a surface. - - Mouse-button - An electric switch on a computer mouse which can be pressed or clicked to select or interact with an element of a graphical user interface. - - - Scroll-wheel - A scroll wheel or mouse wheel is a wheel used for scrolling made of hard plastic with a rubbery surface usually located between the left and right mouse buttons and is positioned perpendicular to the mouse surface. - - - - Joystick - A control device that uses a movable handle to create two-axis input for a computer device. - - - Keyboard - A device consisting of mechanical keys that are pressed to create input to a computer. - - Keyboard-key - A button on a keyboard usually representing letters, numbers, functions, or symbols. - - # - Value of a keyboard key. - - takesValue - - - - - - Keypad - A device consisting of keys, usually in a block arrangement, that provides limited input to a system. - - Keypad-key - A key on a separate section of a computer keyboard that groups together numeric keys and those for mathematical or other special functions in an arrangement like that of a calculator. - - # - Value of keypad key. - - takesValue - - - - - - Microphone - A device designed to convert sound to an electrical signal. - - - Push-button - A switch designed to be operated by pressing a button. - - - - Output-device - Any piece of computer hardware equipment which converts information into human understandable form. - - Display-device - An output device for presentation of information in visual or tactile form the latter used for example in tactile electronic displays for blind people. - - Head-mounted-display - An instrument that functions as a display device, worn on the head or as part of a helmet, that has a small display optic in front of one (monocular HMD) or each eye (binocular HMD). - - - LED-display - A LED display is a flat panel display that uses an array of light-emitting diodes as pixels for a video display. - - - Computer-screen - An electronic device designed as a display or a physical device designed to be a protective meshwork. - - Screen-window - A part of a computer screen that contains a display different from the rest of the screen. A window is a graphical control element consisting of a visual area containing some of the graphical user interface of the program it belongs to and is framed by a window decoration. - - - - - Auditory-device - A device designed to produce sound. - - Headphones - An instrument that consists of a pair of small loudspeakers, or less commonly a single speaker, held close to ears and connected to a signal source such as an audio amplifier, radio, CD player or portable media player. - - - Loudspeaker - A device designed to convert electrical signals to sounds that can be heard. - - - - - Recording-device - A device that copies information in a signal into a persistent information bearer. - - EEG-recorder - A device for recording electric currents in the brain using electrodes applied to the scalp, to the surface of the brain, or placed within the substance of the brain. - - - File-storage - A device for recording digital information to a permanent media. - - - MEG-recorder - A device for measuring the magnetic fields produced by electrical activity in the brain, usually conducted externally. - - - Motion-capture - A device for recording the movement of objects or people. - - - Tape-recorder - A device for recording and reproduction usually using magnetic tape for storage that can be saved and played back. - - - - Touchscreen - A control component that operates an electronic device by pressing the display on the screen. - - - - Machine - A human-made device that uses power to apply forces and control movement to perform an action. - - - Measurement-device - A device in which a measure function inheres. - - Clock - A device designed to indicate the time of day or to measure the time duration of an event or action. - - Clock-face - A location identifier based on clockface numbering or anatomic subregion. - - - - - Robot - A mechanical device that sometimes resembles a living animal and is capable of performing a variety of often complex human tasks on command or by being programmed in advance. - - - Tool - A component that is not part of a device but is designed to support its assemby or operation. - - - - Document - A physical object, or electronic counterpart, that is characterized by containing writing which is meant to be human-readable. - - Letter - A written message addressed to a person or organization. - - - Note - A brief written record. - - - Book - A volume made up of pages fastened along one edge and enclosed between protective covers. - - - Notebook - A book for notes or memoranda. - - - - Furnishing - Furniture, fittings, and other decorative accessories, such as curtains and carpets, for a house or room. - - - Manufactured-material - Substances created or extracted from raw materials. - - Ceramic - A hard, brittle, heat-resistant and corrosion-resistant material made by shaping and then firing a nonmetallic mineral, such as clay, at a high temperature. - - - Glass - A brittle transparent solid with irregular atomic structure. - - - Paper - A thin sheet material produced by mechanically or chemically processing cellulose fibres derived from wood, rags, grasses or other vegetable sources in water. - - - Plastic - Various high-molecular-weight thermoplastic or thermosetting polymers that are capable of being molded, extruded, drawn, or otherwise shaped and then hardened into a form. - - - Steel - An alloy made up of iron with typically a few tenths of a percent of carbon to improve its strength and fracture resistance compared to iron. - - - - Media - Media are audo/visual/audiovisual modes of communicating information for mass consumption. - - Media-clip - A short segment of media. - - Audio-clip - A short segment of audio. - - - Audiovisual-clip - A short media segment containing both audio and video. - - - Video-clip - A short segment of video. - - - - Visualization - An planned process that creates images, diagrams or animations from the input data. - - Animation - A form of graphical illustration that changes with time to give a sense of motion or represent dynamic changes in the portrayal. - - - Art-installation - A large-scale, mixed-media constructions, often designed for a specific place or for a temporary period of time. - - - Braille - A display using a system of raised dots that can be read with the fingers by people who are blind. - - - Image - Any record of an imaging event whether physical or electronic. - - Cartoon - A type of illustration, sometimes animated, typically in a non-realistic or semi-realistic style. The specific meaning has evolved over time, but the modern usage usually refers to either an image or series of images intended for satire, caricature, or humor. A motion picture that relies on a sequence of illustrations for its animation. - - - Drawing - A representation of an object or outlining a figure, plan, or sketch by means of lines. - - - Icon - A sign (such as a word or graphic symbol) whose form suggests its meaning. - - - Painting - A work produced through the art of painting. - - - Photograph - An image recorded by a camera. - - - - Movie - A sequence of images displayed in succession giving the illusion of continuous movement. - - - Outline-visualization - A visualization consisting of a line or set of lines enclosing or indicating the shape of an object in a sketch or diagram. - - - Point-light-visualization - A display in which action is depicted using a few points of light, often generated from discrete sensors in motion capture. - - - Sculpture - A two- or three-dimensional representative or abstract forms, especially by carving stone or wood or by casting metal or plaster. - - - Stick-figure-visualization - A drawing showing the head of a human being or animal as a circle and all other parts as straight lines. - - - - - Navigational-object - An object whose purpose is to assist directed movement from one location to another. - - Path - A trodden way. A way or track laid down for walking or made by continual treading. - - - Road - An open way for the passage of vehicles, persons, or animals on land. - - Lane - A defined path with physical dimensions through which an object or substance may traverse. - - - - Runway - A paved strip of ground on a landing field for the landing and takeoff of aircraft. - - - - Vehicle - A mobile machine which transports people or cargo. - - Aircraft - A vehicle which is able to travel through air in an atmosphere. - - - Bicycle - A human-powered, pedal-driven, single-track vehicle, having two wheels attached to a frame, one behind the other. - - - Boat - A watercraft of any size which is able to float or plane on water. - - - Car - A wheeled motor vehicle used primarily for the transportation of human passengers. - - - Cart - A cart is a vehicle which has two wheels and is designed to transport human passengers or cargo. - - - Tractor - A mobile machine specifically designed to deliver a high tractive effort at slow speeds, and mainly used for the purposes of hauling a trailer or machinery used in agriculture or construction. - - - Train - A connected line of railroad cars with or without a locomotive. - - - Truck - A motor vehicle which, as its primary funcion, transports cargo rather than human passangers. - - - - - Natural-object - Something that exists in or is produced by nature, and is not artificial or man-made. - - Mineral - A solid, homogeneous, inorganic substance occurring in nature and having a definite chemical composition. - - - Natural-feature - A feature that occurs in nature. A prominent or identifiable aspect, region, or site of interest. - - Field - An unbroken expanse as of ice or grassland. - - - Hill - A rounded elevation of limited extent rising above the surrounding land with local relief of less than 300m. - - - Mountain - A landform that extends above the surrounding terrain in a limited area. - - - River - A natural freshwater surface stream of considerable volume and a permanent or seasonal flow, moving in a definite channel toward a sea, lake, or another river. - - - Waterfall - A sudden descent of water over a step or ledge in the bed of a river. - - - - - - Sound - Mechanical vibrations transmitted by an elastic medium. Something that can be heard. - - Environmental-sound - Sounds occuring in the environment. An accumulation of noise pollution that occurs outside. This noise can be caused by transport, industrial, and recreational activities. - - Crowd-sound - Noise produced by a mixture of sounds from a large group of people. - - - Signal-noise - Any part of a signal that is not the true or original signal but is introduced by the communication mechanism. - - - - Musical-sound - Sound produced by continuous and regular vibrations, as opposed to noise. - - Tone - A musical note, warble, or other sound used as a particular signal on a telephone or answering machine. - - - Instrument-sound - Sound produced by a musical instrument. - - - Vocalized-sound - Musical sound produced by vocal cords in a biological agent. - - - - Named-animal-sound - A sound recognizable as being associated with particular animals. - - Barking - Sharp explosive cries like sounds made by certain animals, especially a dog, fox, or seal. - - - Bleating - Wavering cries like sounds made by a sheep, goat, or calf. - - - Crowing - Loud shrill sounds characteristic of roosters. - - - Chirping - Short, sharp, high-pitched noises like sounds made by small birds or an insects. - - - Growling - Low guttural sounds like those that made in the throat by a hostile dog or other animal. - - - Meowing - Vocalizations like those made by as those cats. These sounds have diverse tones and are sometimes chattered, murmured or whispered. The purpose can be assertive. - - - Mooing - Deep vocal sounds like those made by a cow. - - - Purring - Low continuous vibratory sound such as those made by cats. The sound expresses contentment. - - - Roaring - Loud, deep, or harsh prolonged sounds such as those made by big cats and bears for long-distance communication and intimidation. - - - Squawking - Loud, harsh noises such as those made by geese. - - - - Named-object-sound - A sound identifiable as coming from a particular type of object. - - Alarm-sound - A loud signal often loud continuous ringing to alert people to a problem or condition that requires urgent attention. - - - Beep - A short, single tone, that is typically high-pitched and generally made by a computer or other machine. - - - Buzz - A persistent vibratory sound often made by a buzzer device and used to indicate something incorrect. - - - Ka-ching - The sound made by a mechanical cash register, often to designate a reward. - - - Click - The sound made by a mechanical cash register, often to designate a reward. - - - Ding - A short ringing sound such as that made by a bell, often to indicate a correct response or the expiration of time. - - - Horn-blow - A loud sound made by forcing air through a sound device that funnels air to create the sound, often used to sound an alert. - - - Siren - A loud, continuous sound often varying in frequency designed to indicate an emergency. - - - - - - Property - Something that pertains to a thing. A characteristic of some entity. A quality or feature regarded as a characteristic or inherent part of someone or something. HED attributes are adjectives or adverbs. - - extensionAllowed - - - Agent-property - Something that pertains to an agent. - - extensionAllowed - - - Agent-state - The state of the agent. - - Agent-cognitive-state - The state of the cognitive processes or state of mind of the agent. - - Alert - Condition of heightened watchfulness or preparation for action. - - - Anesthetized - Having lost sensation to pain or having senses dulled due to the effects of an anesthetic. - - - Asleep - Having entered a periodic, readily reversible state of reduced awareness and metabolic activity, usually accompanied by physical relaxation and brain activity. - - - Attentive - Concentrating and focusing mental energy on the task or surroundings. - - - Awake - In a non sleeping state. - - - Brain-dead - Characterized by the irreversible absence of cortical and brain stem functioning. - - - Comatose - In a state of profound unconsciousness associated with markedly depressed cerebral activity. - - - Drowsy - In a state of near-sleep, a strong desire for sleep, or sleeping for unusually long periods. - - - Intoxicated - In a state with disturbed psychophysiological functions and responses as a result of administration or ingestion of a psychoactive substance. - - - Locked-in - In a state of complete paralysis of all voluntary muscles except for the ones that control the movements of the eyes. - - - Passive - Not responding or initiating an action in response to a stimulus. - - - Resting - A state in which the agent is not exhibiting any physical exertion. - - - Vegetative - A state of wakefulness and conscience, but (in contrast to coma) with involuntary opening of the eyes and movements (such as teeth grinding, yawning, or thrashing of the extremities). - - - - Agent-emotional-state - The status of the general temperament and outlook of an agent. - - Angry - Experiencing emotions characterized by marked annoyance or hostility. - - - Aroused - In a state reactive to stimuli leading to increased heart rate and blood pressure, sensory alertness, mobility and readiness to respond. - - - Awed - Filled with wonder. Feeling grand, sublime or powerful emotions characterized by a combination of joy, fear, admiration, reverence, and/or respect. - - - Compassionate - Feeling or showing sympathy and concern for others often evoked for a person who is in distress and associated with altruistic motivation. - - - Content - Feeling satisfaction with things as they are. - - - Disgusted - Feeling revulsion or profound disapproval aroused by something unpleasant or offensive. - - - Emotionally-neutral - Feeling neither satisfied nor dissatisfied. - - - Empathetic - Understanding and sharing the feelings of another. Being aware of, being sensitive to, and vicariously experiencing the feelings, thoughts, and experience of another. - - - Excited - Feeling great enthusiasm and eagerness. - - - Fearful - Feeling apprehension that one may be in danger. - - - Frustrated - Feeling annoyed as a result of being blocked, thwarted, disappointed or defeated. - - - Grieving - Feeling sorrow in response to loss, whether physical or abstract. - - - Happy - Feeling pleased and content. - - - Jealous - Feeling threatened by a rival in a relationship with another individual, in particular an intimate partner, usually involves feelings of threat, fear, suspicion, distrust, anxiety, anger, betrayal, and rejection. - - - Joyful - Feeling delight or intense happiness. - - - Loving - Feeling a strong positive emotion of affection and attraction. - - - Relieved - No longer feeling pain, distress, anxiety, or reassured. - - - Sad - Feeling grief or unhappiness. - - - Stressed - Experiencing mental or emotional strain or tension. - - - - Agent-physiological-state - Having to do with the mechanical, physical, or biochemical function of an agent. - - Healthy - Having no significant health-related issues. - - relatedTag - Sick - - - - Hungry - Being in a state of craving or desiring food. - - relatedTag - Sated - Thirsty - - - - Rested - Feeling refreshed and relaxed. - - relatedTag - Tired - - - - Sated - Feeling full. - - relatedTag - Hungry - - - - Sick - Being in a state of ill health, bodily malfunction, or discomfort. - - relatedTag - Healthy - - - - Thirsty - Feeling a need to drink. - - relatedTag - Hungry - - - - Tired - Feeling in need of sleep or rest. - - relatedTag - Rested - - - - - Agent-postural-state - Pertaining to the position in which agent holds their body. - - Crouching - Adopting a position where the knees are bent and the upper body is brought forward and down, sometimes to avoid detection or to defend oneself. - - - Eyes-closed - Keeping eyes closed with no blinking. - - - Eyes-open - Keeping eyes open with occasional blinking. - - - Kneeling - Positioned where one or both knees are on the ground. - - - On-treadmill - Ambulation on an exercise apparatus with an endless moving belt to support moving in place. - - - Prone - Positioned in a recumbent body position whereby the person lies on its stomach and faces downward. - - - Sitting - In a seated position. - - - Standing - Assuming or maintaining an erect upright position. - - - Seated-with-chin-rest - Using a device that supports the chin and head. - - - - - Agent-task-role - The function or part that is ascribed to an agent in performing the task. - - Experiment-actor - An agent who plays a predetermined role to create the experiment scenario. - - - Experiment-controller - An agent exerting control over some aspect of the experiment. - - - Experiment-participant - Someone who takes part in an activity related to an experiment. - - - Experimenter - Person who is the owner of the experiment and has its responsibility. - - - - Agent-trait - A genetically, environmentally, or socially determined characteristic of an agent. - - Age - Length of time elapsed time since birth of the agent. - - # - - takesValue - - - - - Agent-experience-level - Amount of skill or knowledge that the agent has as pertains to the task. - - Expert-level - Having comprehensive and authoritative knowledge of or skill in a particular area related to the task. - - relatedTag - Intermediate-experience-level - Novice-level - - - - Intermediate-experience-level - Having a moderate amount of knowledge or skill related to the task. - - relatedTag - Expert-level - Novice-level - - - - Novice-level - Being inexperienced in a field or situation related to the task. - - relatedTag - Expert-level - Intermediate-experience-level - - - - - Gender - Characteristics that are socially constructed, including norms, behaviors, and roles based on sex. - - - Sex - Physical properties or qualities by which male is distinguished from female. - - Female - Biological sex of an individual with female sexual organs such ova. - - - Male - Biological sex of an individual with male sexual organs producing sperm. - - - Intersex - Having genitalia and/or secondary sexual characteristics of indeterminate sex. - - - - Handedness - Individual preference for use of a hand, known as the dominant hand. - - Left-handed - Preference for using the left hand or foot for tasks requiring the use of a single hand or foot. - - - Right-handed - Preference for using the right hand or foot for tasks requiring the use of a single hand or foot. - - - Ambidextrous - Having no overall dominance in the use of right or left hand or foot in the performance of tasks that require one hand or foot. - - - - - - Data-property - Something that pertains to data or information. - - extensionAllowed - - - Data-marker - An indicator placed to mark something. - - Temporal-marker - An indicator placed at a particular time in the data. - - Onset - Labels the start or beginning of something, usually an event. - - topLevelTagGroup - - - - Offset - Labels the time at which something stops. - - topLevelTagGroup - - - - Pause - Indicates the temporary interruption of the operation a process and subsequently wait for a signal to continue. - - - Time-out - A cancellation or cessation that automatically occurs when a predefined interval of time has passed without a certain event occurring. - - - Time-sync - A synchronization signal whose purpose to help synchronize different signals or processes. Often used to indicate a marker inserted into the recorded data to allow post hoc synchronization of concurrently recorded data streams. - - - - - Data-resolution - Smallest change in a quality being measured by an sensor that causes a perceptible change. - - Printer-resolution - Resolution of a printer, usually expressed as the number of dots-per-inch for a printer. - - # - - takesValue - - - - - Screen-resolution - Resolution of a screen, usually expressed as the of pixels in a dimension for a digital display device. - - # - - takesValue - - - - - Sensory-resolution - Resolution of measurements by a sensing device. - - # - - takesValue - - - - - Spatial-resolution - Linear spacing of a spatial measurement. - - # - - takesValue - - - - - Spectral-resolution - Measures the ability of a sensor to resolve features in the electromagnetic spectrum. - - # - - takesValue - - - - - Temporal-resolution - Measures the ability of a sensor to resolve features in time. - - # - - takesValue - - - - - - Data-source-type - The type of place, person, or thing from which the data comes or can be obtained. - - Computed-feature - A feature computed from the data by a tool. This tag should be grouped with a label of the form Toolname_propertyName. - - - Computed-prediction - A computed extrapolation of known data. - - - Expert-annotation - An explanatory or critical comment or other in-context information provided by an authority. - - - Instrument-measurement - Information obtained from a device that is used to measure material properties or make other observations. - - - Observation - Active acquisition of information from a primary source. Should be grouped with a label of the form AgentID_featureName. - - - - Data-value - Designation of the type of a data item. - - Categorical-value - Indicates that something can take on a limited and usually fixed number of possible values. - - Categorical-class-value - Categorical values that fall into discrete classes such as true or false. The grouping is absolute in the sense that it is the same for all participants. - - All - To a complete degree or to the full or entire extent. - - relatedTag - Some - None - - - - Correct - Free from error. Especially conforming to fact or truth. - - relatedTag - Incorrect - - - - Explicit - Stated clearly and in detail, leaving no room for confusion or doubt. - - relatedTag - Implicit - - - - False - Not in accordance with facts, reality or definitive criteria. - - relatedTag - True - - - - Implicit - Implied though not plainly expressed. - - relatedTag - Explicit - - - - Invalid - Not true because based on erroneous information or unsound reasoning or not conforming to the correct format or specifications. - - relatedTag - Valid - - - - None - No person or thing, nobody, not any. - - relatedTag - All - Some - - - - Some - At least a small amount or number of, but not a large amount of, or often. - - relatedTag - All - None - - - - True - Conforming to facts, reality or definitive criteria. - - relatedTag - False - - - - Valid - Allowable, usable, or acceptable. - - relatedTag - Invalid - - - - Wrong - Not accurate, correct, or appropriate. - - relatedTag - Correct - - - - - Categorical-judgment-value - Categorical values that are based on the judgment or perception of the participant such familiar and famous. - - Abnormal - Deviating in any way from the state, position, structure, condition, behavior, or rule which is considered a norm. - - relatedTag - Normal - - - - Asymmetrical - Lacking symmetry or having parts that fail to correspond to one another in shape, size, or arrangement. - - relatedTag - Symmetrical - - - - Audible - A sound that can be perceived by the participant. - - relatedTag - Inaudible - - - - Congruent - Concordance of multiple evidence lines. In agreement or harmony. - - relatedTag - Incongruent - - - - Complex - Hard, involved or complicated, elaborate, having many parts. - - relatedTag - Simple - - - - Constrained - Keeping something within particular limits or bounds. - - relatedTag - Unconstrained - - - - Disordered - Not neatly arranged. Confused and untidy. A structural quality in which the parts of an object are non-rigid. - - relatedTag - Ordered - - - - Familiar - Recognized, familiar, or within the scope of knowledge. - - relatedTag - Unfamiliar - Famous - - - - Famous - A person who has a high degree of recognition by the general population for his or her success or accomplishments. A famous person. - - relatedTag - Familiar - Unfamiliar - - - - Inaudible - A sound below the threshold of perception of the participant. - - relatedTag - Audible - - - - Incongruent - Not in agreement or harmony. - - relatedTag - Congruent - - - - Involuntary - An action that is not made by choice. In the body, involuntary actions (such as blushing) occur automatically, and cannot be controlled by choice. - - relatedTag - Voluntary - - - - Masked - Information exists but is not provided or is partially obscured due to security, privacy, or other concerns. - - relatedTag - Unmasked - - - - Normal - Being approximately average or within certain limits. Conforming with or constituting a norm or standard or level or type or social norm. - - relatedTag - Abnormal - - - - Ordered - Conforming to a logical or comprehensible arrangement of separate elements. - - relatedTag - Disordered - - - - Simple - Easily understood or presenting no difficulties. - - relatedTag - Complex - - - - Symmetrical - Made up of exactly similar parts facing each other or around an axis. Showing aspects of symmetry. - - relatedTag - Asymmetrical - - - - Unconstrained - Moving without restriction. - - relatedTag - Constrained - - - - Unfamiliar - Not having knowledge or experience of. - - relatedTag - Familiar - Famous - - - - Unmasked - Information is revealed. - - relatedTag - Masked - - - - Voluntary - Using free will or design; not forced or compelled; controlled by individual volition. - - relatedTag - Involuntary - - - - - Categorical-level-value - Categorical values based on dividing a continuous variable into levels such as high and low. - - Cold - Characterized by an absence of heat. - - relatedTag - Hot - - - - Deep - Extending relatively far inward or downward. - - relatedTag - Shallow - - - - High - Having a greater than normal degree, intensity, or amount. - - relatedTag - Low - Medium - - - - Hot - Characterized by an excess of heat. - - relatedTag - Cold - - - - Liminal - Situated at a sensory threshold that is barely perceptible or capable of eliciting a response. - - relatedTag - Subliminal - Supraliminal - - - - Loud - Characterizing a perceived high intensity of sound. - - relatedTag - Quiet - - - - Low - Less than normal in degree, intensity or amount. - - relatedTag - High - - - - Medium - Mid-way between small and large in number, quantity, magnitude or extent. - - relatedTag - Low - High - - - - Negative - Involving disadvantage or harm. - - relatedTag - Positive - - - - Positive - Involving advantage or good. - - relatedTag - Negative - - - - Quiet - Characterizing a perceived low intensity of sound. - - relatedTag - Loud - - - - Rough - Having a surface with perceptible bumps, ridges, or irregularities. - - relatedTag - Smooth - - - - Shallow - Having a depth which is relatively low. - - relatedTag - Deep - - - - Smooth - Having a surface free from bumps, ridges, or irregularities. - - relatedTag - Rough - - - - Subliminal - Situated below a sensory threshold that is imperceptible or not capable of eliciting a response. - - relatedTag - Liminal - Supraliminal - - - - Supraliminal - Situated above a sensory threshold that is perceptible or capable of eliciting a response. - - relatedTag - Liminal - Subliminal - - - - Thick - Wide in width, extent or cross-section. - - relatedTag - Thin - - - - Thin - Narrow in width, extent or cross-section. - - relatedTag - Thick - - - - - Categorical-orientation-value - Value indicating the orientation or direction of something. - - Backward - Directed behind or to the rear. - - relatedTag - Forward - - - - Downward - Moving or leading toward a lower place or level. - - relatedTag - Leftward - Rightward - Upward - - - - Forward - At or near or directed toward the front. - - relatedTag - Backward - - - - Horizontally-oriented - Oriented parallel to or in the plane of the horizon. - - - Leftward - Going toward or facing the left. - - relatedTag - Downward - Rightward - Upward - - - - Oblique - Slanting or inclined in direction, course, or position that is neither parallel nor perpendicular nor right-angular. - - relatedTag - Rotated - - - - Rightward - Going toward or situated on the right. - - relatedTag - Downward - Leftward - Upward - - - - Rotated - Positioned offset around an axis or center. - - - Upward - Moving, pointing, or leading to a higher place, point, or level. - - relatedTag - Downward - Leftward - Rightward - - - - Vertically-oriented - Oriented perpendicular to the plane of the horizon. - - - - - Physical-value - The value of some physical property of something. - - Weight - The relative mass or the quantity of matter contained by something. - - # - - takesValue - - - unitClass - weightUnits - - - valueClass - numericClass - - - - - - Quantitative-value - Something capable of being estimated or expressed with numeric values. - - Fraction - A numerical value betwee 0 and 1. - - # - - takesValue - - - valueClass - numericClass - - - - - Item-count - The integer count of something which is usually grouped with the entity it is counting. (Item-count/3, A) indicates that 3 of A have occurred up to this point. - - # - - takesValue - - - valueClass - numericClass - - - - - Item-interval - An integer indicating how many items or entities have passed since the last one of these. An item interval of 0 indicates the current item. - - # - - takesValue - - - valueClass - numericClass - - - - - Percentage - A fraction or ratio with 100 understood as the denominator. - - # - - takesValue - - - valueClass - numericClass - - - - - Ratio - A quotient of quantities of the same kind for different components within the same system. - - # - - takesValue - - - valueClass - numericClass - - - - - - Statistical-value - A value based on or employing the principles of statistics. - - extensionAllowed - - - Data-maximum - The largest possible quantity or degree. - - # - - takesValue - - - valueClass - numericClass - - - - - Data-mean - The sum of a set of values divided by the number of values in the set. - - # - - takesValue - - - valueClass - numericClass - - - - - Data-median - The value which has an equal number of values greater and less than it. - - # - - takesValue - - - valueClass - numericClass - - - - - Data-minimum - The smallest possible quantity. - - # - - takesValue - - - valueClass - numericClass - - - - - Probability - A measure of the expectation of the occurrence of a particular event. - - # - - takesValue - - - valueClass - numericClass - - - - - Standard-deviation - A measure of the range of values in a set of numbers. Standard deviation is a statistic used as a measure of the dispersion or variation in a distribution, equal to the square root of the arithmetic mean of the squares of the deviations from the arithmetic mean. - - # - - takesValue - - - valueClass - numericClass - - - - - Statistical-accuracy - A measure of closeness to true value expressed as a number between 0 and 1. - - # - - takesValue - - - valueClass - numericClass - - - - - Statistical-precision - A quantitative representation of the degree of accuracy necessary for or associated with a particular action. - - # - - takesValue - - - valueClass - numericClass - - - - - Statistical-recall - Sensitivity is a measurement datum qualifying a binary classification test and is computed by substracting the false negative rate to the integral numeral 1. - - # - - takesValue - - - valueClass - numericClass - - - - - Statistical-uncertainty - A measure of the inherent variability of repeated observation measurements of a quantity including quantities evaluated by statistical methods and by other means. - - # - - takesValue - - - valueClass - numericClass - - - - - - Spatiotemporal-value - A property relating to space and/or time. - - Rate-of-change - The amount of change accumulated per unit time. - - Acceleration - Magnitude of the rate of change in either speed or direction. The direction of change should be given separately. - - # - - takesValue - - - unitClass - accelerationUnits - - - valueClass - numericClass - - - - - Frequency - Frequency is the number of occurrences of a repeating event per unit time. - - # - - takesValue - - - unitClass - frequencyUnits - - - valueClass - numericClass - - - - - Jerk-rate - Magnitude of the rate at which the acceleration of an object changes with respect to time. The direction of change should be given separately. - - # - - takesValue - - - unitClass - jerkUnits - - - valueClass - numericClass - - - - - Sampling-rate - The number of digital samples taken or recorded per unit of time. - - # - - takesValue - - - unitClass - frequencyUnits - - - - - Refresh-rate - The frequency with which the image on a computer monitor or similar electronic display screen is refreshed, usually expressed in hertz. - - # - - takesValue - - - valueClass - numericClass - - - - - Speed - A scalar measure of the rate of movement of the object expressed either as the distance travelled divided by the time taken (average speed) or the rate of change of position with respect to time at a particular point (instantaneous speed). The direction of change should be given separately. - - # - - takesValue - - - unitClass - speedUnits - - - valueClass - numericClass - - - - - Temporal-rate - The number of items per unit of time. - - # - - takesValue - - - unitClass - frequencyUnits - - - valueClass - numericClass - - - - - - Spatial-value - Value of an item involving space. - - Angle - The amount of inclination of one line to another or the plane of one object to another. - - unitClass - angleUnits - - - # - - takesValue - - - valueClass - numericClass - - - - - Distance - A measure of the space separating two objects or points. - - # - - takesValue - - - unitClass - physicalLengthUnits - - - valueClass - numericClass - - - - - Position - A reference to the alignment of an object, a particular situation or view of a situation, or the location of an object. Coordinates with respect a specified frame of reference or the default Screen-frame if no frame is given. - - X-position - The position along the x-axis of the frame of reference. - - # - - takesValue - - - unitClass - physicalLengthUnits - - - valueClass - numericClass - - - - - Y-position - The position along the y-axis of the frame of reference. - - # - - takesValue - - - unitClass - physicalLengthUnits - - - valueClass - numericClass - - - - - Z-position - The position along the z-axis of the frame of reference. - - # - - takesValue - - - unitClass - physicalLengthUnits - - - valueClass - numericClass - - - - - - Size - The physical magnitude of something. - - Area - The extent of a 2-dimensional surface enclosed within a boundary. - - # - - takesValue - - - unitClass - areaUnits - - - valueClass - numericClass - - - - - Depth - The distance from the surface of something especially from the perspective of looking from the front. - - # - - takesValue - - - unitClass - physicalLengthUnits - - - valueClass - numericClass - - - - - Length - The linear extent in space from one end of something to the other end, or the extent of something from beginning to end. - - # - - takesValue - - - unitClass - physicalLengthUnits - - - valueClass - numericClass - - - - - Width - The extent or measurement of something from side to side. - - # - - takesValue - - - unitClass - physicalLengthUnits - - - valueClass - numericClass - - - - - Height - The vertical measurement or distance from the base to the top of an object. - - # - - takesValue - - - unitClass - physicalLengthUnits - - - valueClass - numericClass - - - - - Volume - The amount of three dimensional space occupied by an object or the capacity of a space or container. - - # - - takesValue - - - unitClass - volumeUnits - - - valueClass - numericClass - - - - - - - Temporal-value - A characteristic of or relating to time or limited by time. - - Delay - Time during which some action is awaited. - - # - - takesValue - - - unitClass - timeUnits - - - valueClass - numericClass - - - - - Duration - The period of time during which something occurs or continues. - - # - - takesValue - - - unitClass - timeUnits - - - valueClass - numericClass - - - - - Time-interval - The period of time separating two instances, events, or occurrences. - - # - - takesValue - - - unitClass - timeUnits - - - valueClass - numericClass - - - - - Time-value - A value with units of time. Usually grouped with tags identifying what the value represents. - - # - - takesValue - - - unitClass - timeUnits - - - valueClass - numericClass - - - - - - - - Data-variability-attribute - An attribute describing how something changes or varies. - - Abrupt - Marked by sudden change. - - - Constant - Continually recurring or continuing without interruption. Not changing in time or space. - - - Continuous - Uninterrupted in time, sequence, substance, or extent. - - relatedTag - Discrete - Discontinuous - - - - Decreasing - Becoming smaller or fewer in size, amount, intensity, or degree. - - relatedTag - Increasing - - - - Deterministic - No randomness is involved in the development of the future states of the element. - - relatedTag - Random - Stochastic - - - - Discontinuous - Having a gap in time, sequence, substance, or extent. - - relatedTag - Continuous - - - - Discrete - Constituting a separate entities or parts. - - relatedTag - Continuous - Discontinuous - - - - Flickering - Moving irregularly or unsteadily or burning or shining fitfully or with a fluctuating light. - - - Estimated-value - Something that has been calculated or measured approximately. - - - Exact-value - A value that is viewed to the true value according to some standard. - - - Fractal - Having extremely irregular curves or shapes for which any suitably chosen part is similar in shape to a given larger or smaller part when magnified or reduced to the same size. - - - Increasing - Becoming greater in size, amount, or degree. - - relatedTag - Decreasing - - - - Random - Governed by or depending on chance. Lacking any definite plan or order or purpose. - - relatedTag - Deterministic - Stochastic - - - - Repetitive - A recurring action that is often non-purposeful. - - - Stochastic - Uses a random probability distribution or pattern that may be analysed statistically but may not be predicted precisely to determine future states. - - relatedTag - Deterministic - Random - - - - Varying - Differing in size, amount, degree, or nature. - - - - - Environmental-property - Relating to or arising from the surroundings of an agent. - - Indoors - Located inside a building or enclosure. - - - Outdoors - Any area outside a building or shelter. - - - Real-world - Located in a place that exists in real space and time under realistic conditions. - - - Virtual-world - Using technology that creates immersive, computer-generated experiences that a person can interact with and navigate through. The digital content is generally delivered to the user through some type of headset and responds to changes in head position or through interaction with other types of sensors. Existing in a virtual setting such as a simulation or game environment. - - - Augmented-reality - Using technology that enhances real-world experiences with computer-derived digital overlays to change some aspects of perception of the natural environment. The digital content is shown to the user through a smart device or glasses and responds to changes in the environment. - - - Motion-platform - A mechanism that creates the feelings of being in a real motion environment. - - - Urban - Relating to, located in, or characteristic of a city or densely populated area. - - - Rural - Of or pertaining to the country as opposed to the city. - - - Terrain - Characterization of the physical features of a tract of land. - - Composite-terrain - Tracts of land characterized by a mixure of physical features. - - - Dirt-terrain - Tracts of land characterized by a soil surface and lack of vegetation. - - - Grassy-terrain - Tracts of land covered by grass. - - - Gravel-terrain - Tracts of land covered by a surface consisting a loose aggregation of small water-worn or pounded stones. - - - Leaf-covered-terrain - Tracts of land covered by leaves and composited organic material. - - - Muddy-terrain - Tracts of land covered by a liquid or semi-liquid mixture of water and some combination of soil, silt, and clay. - - - Paved-terrain - Tracts of land covered with concrete, asphalt, stones, or bricks. - - - Rocky-terrain - Tracts of land consisting or full of rock or rocks. - - - Sloped-terrain - Tracts of land arranged in a sloping or inclined position. - - - Uneven-terrain - Tracts of land that are not level, smooth, or regular. - - - - - Informational-property - Something that pertains to a task. - - extensionAllowed - - - Description - An explanation of what the tag group it is in means. If the description is at the top-level of an event string, the description applies to the event. - - requireChild - - - # - - takesValue - - - valueClass - textClass - - - - - ID - An alphanumeric name that identifies either a unique object or a unique class of objects. Here the object or class may be an idea, physical countable object (or class), or physical uncountable substance (or class). - - requireChild - - - # - - takesValue - - - valueClass - textClass - - - - - Label - A string of 20 or fewer characters identifying something. Labels usually refer to general classes of things while IDs refer to specific instances. A term that is associated with some entity. A brief description given for purposes of identification. An identifying or descriptive marker that is attached to an object. - - requireChild - - - # - - takesValue - - - valueClass - nameClass - - - - - Metadata - Data about data. Information that describes another set of data. - - CogAtlas - The Cognitive Atlas ID number of something. - - # - - takesValue - - - - - CogPo - The CogPO ID number of something. - - # - - takesValue - - - - - Creation-date - The date on which data creation of this element began. - - requireChild - - - # - - takesValue - - - valueClass - dateTimeClass - - - - - Experimental-note - A brief written record about the experiment. - - # - - takesValue - - - valueClass - textClass - - - - - Library-name - Official name of a HED library. - - # - - takesValue - - - valueClass - nameClass - - - - - OBO-identifier - The identifier of a term in some Open Biology Ontology (OBO) ontology. - - # - - takesValue - - - valueClass - nameClass - - - - - Pathname - The specification of a node (file or directory) in a hierarchical file system, usually specified by listing the nodes top-down. - - # - - takesValue - - - - - Subject-identifier - A sequence of characters used to identify, name, or characterize a trial or study subject. - - # - - takesValue - - - - - Version-identifier - An alphanumeric character string that identifies a form or variant of a type or original. - - # - Usually is a semantic version. - - takesValue - - - - - - Parameter - Something user-defined for this experiment. - - Parameter-label - The name of the parameter. - - # - - takesValue - - - valueClass - labelClass - - - - - Parameter-value - The value of the parameter. - - # - - takesValue - - - valueClass - textClass - - - - - - - Organizational-property - Relating to an organization or the action of organizing something. - - Collection - A tag designating a grouping of items such as in a set or list. - - # - Name of the collection. - - takesValue - - - valueClass - nameClass - - - - - Condition-variable - An aspect of the experiment or task that is to be varied during the experiment. Task-conditions are sometimes called independent variables or contrasts. - - # - Name of the condition variable. - - takesValue - - - valueClass - nameClass - - - - - Control-variable - An aspect of the experiment that is fixed throughout the study and usually is explicitly controlled. - - # - Name of the control variable. - - takesValue - - - valueClass - nameClass - - - - - Def - A HED-specific utility tag used with a defined name to represent the tags associated with that definition. - - requireChild - - - # - Name of the definition. - - takesValue - - - valueClass - nameClass - - - - - Def-expand - A HED specific utility tag that is grouped with an expanded definition. The child value of the Def-expand is the name of the expanded definition. - - requireChild - - - tagGroup - - - # - - takesValue - - - valueClass - nameClass - - - - - Definition - A HED-specific utility tag whose child value is the name of the concept and the tag group associated with the tag is an English language explanation of a concept. - - requireChild - - - topLevelTagGroup - - - # - Name of the definition. - - takesValue - - - valueClass - nameClass - - - - - Event-context - A special HED tag inserted as part of a top-level tag group to contain information about the interrelated conditions under which the event occurs. The event context includes information about other events that are ongoing when this event happens. - - topLevelTagGroup - - - unique - - - - Event-stream - A special HED tag indicating that this event is a member of an ordered succession of events. - - # - Name of the event stream. - - takesValue - - - valueClass - nameClass - - - - - Experimental-intertrial - A tag used to indicate a part of the experiment between trials usually where nothing is happening. - - # - Optional label for the intertrial block. - - takesValue - - - valueClass - nameClass - - - - - Experimental-trial - Designates a run or execution of an activity, for example, one execution of a script. A tag used to indicate a particular organizational part in the experimental design often containing a stimulus-response pair or stimulus-response-feedback triad. - - # - Optional label for the trial (often a numerical string). - - takesValue - - - valueClass - nameClass - - - - - Indicator-variable - An aspect of the experiment or task that is measured as task conditions are varied during the experiment. Experiment indicators are sometimes called dependent variables. - - # - Name of the indicator variable. - - takesValue - - - valueClass - nameClass - - - - - Recording - A tag designating the data recording. Recording tags are usually have temporal scope which is the entire recording. - - # - Optional label for the recording. - - takesValue - - - valueClass - nameClass - - - - - Task - An assigned piece of work, usually with a time allotment. A tag used to indicate a linkage the structured activities performed as part of the experiment. - - # - Optional label for the task block. - - takesValue - - - valueClass - nameClass - - - - - Time-block - A tag used to indicate a contiguous time block in the experiment during which something is fixed or noted. - - # - Optional label for the task block. - - takesValue - - - valueClass - nameClass - - - - - - Sensory-property - Relating to sensation or the physical senses. - - Sensory-attribute - A sensory characteristic associated with another entity. - - Auditory-attribute - Pertaining to the sense of hearing. - - Loudness - Perceived intensity of a sound. - - # - - takesValue - - - valueClass - numericClass - - - - - Pitch - A perceptual property that allows the user to order sounds on a frequency scale. - - # - - takesValue - - - unitClass - frequencyUnits - - - valueClass - numericClass - - - - - Sound-envelope - Description of how a sound changes over time. - - Sound-envelope-attack - The time taken for initial run-up of level from nil to peak usually beginning when the key on a musical instrument is pressed. - - # - - takesValue - - - unitClass - timeUnits - - - valueClass - numericClass - - - - - Sound-envelope-decay - The time taken for the subsequent run down from the attack level to the designated sustain level. - - # - - takesValue - - - unitClass - timeUnits - - - valueClass - numericClass - - - - - Sound-envelope-release - The time taken for the level to decay from the sustain level to zero after the key is released - - # - - takesValue - - - unitClass - timeUnits - - - valueClass - numericClass - - - - - Sound-envelope-sustain - The time taken for the main sequence of the sound duration, until the key is released. - - # - - takesValue - - - unitClass - timeUnits - - - valueClass - numericClass - - - - - - Timbre - The perceived sound quality of a singing voice or musical instrument. - - # - - takesValue - - - valueClass - labelClass - - - - - - Gustatory-attribute - Pertaining to the sense of taste. - - Bitter - Having a sharp, pungent taste. - - - Salty - Tasting of or like salt. - - - Savory - Belonging to a taste that is salty or spicy rather than sweet. - - - Sour - Having a sharp, acidic taste. - - - Sweet - Having or resembling the taste of sugar. - - - - Olfactory-attribute - Having a smell. - - - Somatic-attribute - Pertaining to the feelings in the body or of the nervous system. - - Pain - The sensation of discomfort, distress, or agony, resulting from the stimulation of specialized nerve endings. - - - Stress - The negative mental, emotional, and physical reactions that occur when environmental stressors are perceived as exceeding the adaptive capacities of the individual. - - - - Tactile-attribute - Pertaining to the sense of touch. - - Tactile-pressure - Having a feeling of heaviness. - - - Tactile-temperature - Having a feeling of hotness or coldness. - - - Tactile-texture - Having a feeling of roughness. - - - Tactile-vibration - Having a feeling of mechanical oscillation. - - - - Vestibular-attribute - Pertaining to the sense of balance or body position. - - - Visual-attribute - Pertaining to the sense of sight. - - Color - The appearance of objects (or light sources) described in terms of perception of their hue and lightness (or brightness) and saturation. - - CSS-color - One of 140 colors supported by all browsers. For more details such as the color RGB or HEX values, check: https://www.w3schools.com/colors/colors_groups.asp - - Blue-color - CSS color group - - CadetBlue - CSS-color 0x5F9EA0 - - - SteelBlue - CSS-color 0x4682B4 - - - LightSteelBlue - CSS-color 0xB0C4DE - - - LightBlue - CSS-color 0xADD8E6 - - - PowderBlue - CSS-color 0xB0E0E6 - - - LightSkyBlue - CSS-color 0x87CEFA - - - SkyBlue - CSS-color 0x87CEEB - - - CornflowerBlue - CSS-color 0x6495ED - - - DeepSkyBlue - CSS-color 0x00BFFF - - - DodgerBlue - CSS-color 0x1E90FF - - - RoyalBlue - CSS-color 0x4169E1 - - - Blue - CSS-color 0x0000FF - - - MediumBlue - CSS-color 0x0000CD - - - DarkBlue - CSS-color 0x00008B - - - Navy - CSS-color 0x000080 - - - MidnightBlue - CSS-color 0x191970 - - - - Brown-color - CSS color group - - Cornsilk - CSS-color 0xFFF8DC - - - BlanchedAlmond - CSS-color 0xFFEBCD - - - Bisque - CSS-color 0xFFE4C4 - - - NavajoWhite - CSS-color 0xFFDEAD - - - Wheat - CSS-color 0xF5DEB3 - - - BurlyWood - CSS-color 0xDEB887 - - - Tan - CSS-color 0xD2B48C - - - RosyBrown - CSS-color 0xBC8F8F - - - SandyBrown - CSS-color 0xF4A460 - - - GoldenRod - CSS-color 0xDAA520 - - - DarkGoldenRod - CSS-color 0xB8860B - - - Peru - CSS-color 0xCD853F - - - Chocolate - CSS-color 0xD2691E - - - Olive - CSS-color 0x808000 - - - SaddleBrown - CSS-color 0x8B4513 - - - Sienna - CSS-color 0xA0522D - - - Brown - CSS-color 0xA52A2A - - - Maroon - CSS-color 0x800000 - - - - Cyan-color - CSS color group - - Aqua - CSS-color 0x00FFFF - - - Cyan - CSS-color 0x00FFFF - - - LightCyan - CSS-color 0xE0FFFF - - - PaleTurquoise - CSS-color 0xAFEEEE - - - Aquamarine - CSS-color 0x7FFFD4 - - - Turquoise - CSS-color 0x40E0D0 - - - MediumTurquoise - CSS-color 0x48D1CC - - - DarkTurquoise - CSS-color 0x00CED1 - - - - Green-color - CSS color group - - GreenYellow - CSS-color 0xADFF2F - - - Chartreuse - CSS-color 0x7FFF00 - - - LawnGreen - CSS-color 0x7CFC00 - - - Lime - CSS-color 0x00FF00 - - - LimeGreen - CSS-color 0x32CD32 - - - PaleGreen - CSS-color 0x98FB98 - - - LightGreen - CSS-color 0x90EE90 - - - MediumSpringGreen - CSS-color 0x00FA9A - - - SpringGreen - CSS-color 0x00FF7F - - - MediumSeaGreen - CSS-color 0x3CB371 - - - SeaGreen - CSS-color 0x2E8B57 - - - ForestGreen - CSS-color 0x228B22 - - - Green - CSS-color 0x008000 - - - DarkGreen - CSS-color 0x006400 - - - YellowGreen - CSS-color 0x9ACD32 - - - OliveDrab - CSS-color 0x6B8E23 - - - DarkOliveGreen - CSS-color 0x556B2F - - - MediumAquaMarine - CSS-color 0x66CDAA - - - DarkSeaGreen - CSS-color 0x8FBC8F - - - LightSeaGreen - CSS-color 0x20B2AA - - - DarkCyan - CSS-color 0x008B8B - - - Teal - CSS-color 0x008080 - - - - Gray-color - CSS color group - - Gainsboro - CSS-color 0xDCDCDC - - - LightGray - CSS-color 0xD3D3D3 - - - Silver - CSS-color 0xC0C0C0 - - - DarkGray - CSS-color 0xA9A9A9 - - - DimGray - CSS-color 0x696969 - - - Gray - CSS-color 0x808080 - - - LightSlateGray - CSS-color 0x778899 - - - SlateGray - CSS-color 0x708090 - - - DarkSlateGray - CSS-color 0x2F4F4F - - - Black - CSS-color 0x000000 - - - - Orange-color - CSS color group - - Orange - CSS-color 0xFFA500 - - - DarkOrange - CSS-color 0xFF8C00 - - - Coral - CSS-color 0xFF7F50 - - - Tomato - CSS-color 0xFF6347 - - - OrangeRed - CSS-color 0xFF4500 - - - - Pink-color - CSS color group - - Pink - CSS-color 0xFFC0CB - - - LightPink - CSS-color 0xFFB6C1 - - - HotPink - CSS-color 0xFF69B4 - - - DeepPink - CSS-color 0xFF1493 - - - PaleVioletRed - CSS-color 0xDB7093 - - - MediumVioletRed - CSS-color 0xC71585 - - - - Purple-color - CSS color group - - Lavender - CSS-color 0xE6E6FA - - - Thistle - CSS-color 0xD8BFD8 - - - Plum - CSS-color 0xDDA0DD - - - Orchid - CSS-color 0xDA70D6 - - - Violet - CSS-color 0xEE82EE - - - Fuchsia - CSS-color 0xFF00FF - - - Magenta - CSS-color 0xFF00FF - - - MediumOrchid - CSS-color 0xBA55D3 - - - DarkOrchid - CSS-color 0x9932CC - - - DarkViolet - CSS-color 0x9400D3 - - - BlueViolet - CSS-color 0x8A2BE2 - - - DarkMagenta - CSS-color 0x8B008B - - - Purple - CSS-color 0x800080 - - - MediumPurple - CSS-color 0x9370DB - - - MediumSlateBlue - CSS-color 0x7B68EE - - - SlateBlue - CSS-color 0x6A5ACD - - - DarkSlateBlue - CSS-color 0x483D8B - - - RebeccaPurple - CSS-color 0x663399 - - - Indigo - CSS-color 0x4B0082 - - - - Red-color - CSS color group - - LightSalmon - CSS-color 0xFFA07A - - - Salmon - CSS-color 0xFA8072 - - - DarkSalmon - CSS-color 0xE9967A - - - LightCoral - CSS-color 0xF08080 - - - IndianRed - CSS-color 0xCD5C5C - - - Crimson - CSS-color 0xDC143C - - - Red - CSS-color 0xFF0000 - - - FireBrick - CSS-color 0xB22222 - - - DarkRed - CSS-color 0x8B0000 - - - - Yellow-color - CSS color group - - Gold - CSS-color 0xFFD700 - - - Yellow - CSS-color 0xFFFF00 - - - LightYellow - CSS-color 0xFFFFE0 - - - LemonChiffon - CSS-color 0xFFFACD - - - LightGoldenRodYellow - CSS-color 0xFAFAD2 - - - PapayaWhip - CSS-color 0xFFEFD5 - - - Moccasin - CSS-color 0xFFE4B5 - - - PeachPuff - CSS-color 0xFFDAB9 - - - PaleGoldenRod - CSS-color 0xEEE8AA - - - Khaki - CSS-color 0xF0E68C - - - DarkKhaki - CSS-color 0xBDB76B - - - - White-color - CSS color group - - White - CSS-color 0xFFFFFF - - - Snow - CSS-color 0xFFFAFA - - - HoneyDew - CSS-color 0xF0FFF0 - - - MintCream - CSS-color 0xF5FFFA - - - Azure - CSS-color 0xF0FFFF - - - AliceBlue - CSS-color 0xF0F8FF - - - GhostWhite - CSS-color 0xF8F8FF - - - WhiteSmoke - CSS-color 0xF5F5F5 - - - SeaShell - CSS-color 0xFFF5EE - - - Beige - CSS-color 0xF5F5DC - - - OldLace - CSS-color 0xFDF5E6 - - - FloralWhite - CSS-color 0xFFFAF0 - - - Ivory - CSS-color 0xFFFFF0 - - - AntiqueWhite - CSS-color 0xFAEBD7 - - - Linen - CSS-color 0xFAF0E6 - - - LavenderBlush - CSS-color 0xFFF0F5 - - - MistyRose - CSS-color 0xFFE4E1 - - - - - Color-shade - A slight degree of difference between colors, especially with regard to how light or dark it is or as distinguished from one nearly like it. - - Dark-shade - A color tone not reflecting much light. - - - Light-shade - A color tone reflecting more light. - - - - Grayscale - Using a color map composed of shades of gray, varying from black at the weakest intensity to white at the strongest. - - # - White intensity between 0 and 1 - - takesValue - - - valueClass - numericClass - - - - - HSV-color - A color representation that models how colors appear under light. - - Hue - Attribute of a visual sensation according to which an area appears to be similar to one of the perceived colors. - - # - Angular value between 0 and 360 - - takesValue - - - valueClass - numericClass - - - - - Saturation - Colorfulness of a stimulus relative to its own brightness. - - # - B value of RGB between 0 and 1 - - takesValue - - - valueClass - numericClass - - - - - HSV-value - AAttribute of a visual sensation according to which an area appears to emit more or less light. - - # - - takesValue - - - valueClass - numericClass - - - - - - RGB-color - A color from the RGB schema. - - RGB-red - The red component. - - # - R value of RGB between 0 and 1 - - takesValue - - - valueClass - numericClass - - - - - RGB-blue - The blue component. - - # - B value of RGB between 0 and 1 - - takesValue - - - valueClass - numericClass - - - - - RGB-green - The green component. - - # - G value of RGB between 0 and 1 - - takesValue - - - valueClass - numericClass - - - - - - - Luminance - A quality that exists by virtue of the luminous intensity per unit area projected in a given direction. - - - Opacity - A measure of impenetrability to light. - - - - - Sensory-presentation - The entity has a sensory manifestation. - - Auditory-presentation - The sense of hearing is used in the presentation to the user. - - Loudspeaker-separation - The distance between two loudspeakers. Grouped with the Distance tag. - - suggestedTag - Distance - - - - Monophonic - Relating to sound transmission, recording, or reproduction involving a single transmission path. - - - Silent - The absence of ambient audible sound or the state of having ceased to produce sounds. - - - Stereophonic - Relating to, or constituting sound reproduction involving the use of separated microphones and two transmission channels to achieve the sound separation of a live hearing. - - - - Gustatory-presentation - The sense of taste used in the presentation to the user. - - - Olfactory-presentation - The sense of smell used in the presentation to the user. - - - Somatic-presentation - The nervous system is used in the presentation to the user. - - - Tactile-presentation - The sense of touch used in the presentation to the user. - - - Vestibular-presentation - The sense balance used in the presentation to the user. - - - Visual-presentation - The sense of sight used in the presentation to the user. - - 2D-view - A view showing only two dimensions. - - - 3D-view - A view showing three dimensions. - - - Background-view - Parts of the view that are farthest from the viewer and usually the not part of the visual focus. - - - Bistable-view - Something having two stable visual forms that have two distinguishable stable forms as in optical illusions. - - - Foreground-view - Parts of the view that are closest to the viewer and usually the most important part of the visual focus. - - - Foveal-view - Visual presentation directly on the fovea. A view projected on the small depression in the retina containing only cones and where vision is most acute. - - - Map-view - A diagrammatic representation of an area of land or sea showing physical features, cities, roads. - - Aerial-view - Elevated view of an object from above, with a perspective as though the observer were a bird. - - - Satellite-view - A representation as captured by technology such as a satellite. - - - Street-view - A 360-degrees panoramic view from a position on the ground. - - - - Peripheral-view - Indirect vision as it occurs outside the point of fixation. - - - - - - Task-property - Something that pertains to a task. - - extensionAllowed - - - Task-attentional-demand - Strategy for allocating attention toward goal-relevant information. - - Bottom-up-attention - Attentional guidance purely by externally driven factors to stimuli that are salient because of their inherent properties relative to the background. Sometimes this is referred to as stimulus driven. - - relatedTag - Top-down-attention - - - - Covert-attention - Paying attention without moving the eyes. - - relatedTag - Overt-attention - - - - Divided-attention - Integrating parallel multiple stimuli. Behavior involving responding simultaneously to multiple tasks or multiple task demands. - - relatedTag - Focused-attention - - - - Focused-attention - Responding discretely to specific visual, auditory, or tactile stimuli. - - relatedTag - Divided-attention - - - - Orienting-attention - Directing attention to a target stimulus. - - - Overt-attention - Selectively processing one location over others by moving the eyes to point at that location. - - relatedTag - Covert-attention - - - - Selective-attention - Maintaining a behavioral or cognitive set in the face of distracting or competing stimuli. Ability to pay attention to a limited array of all available sensory information. - - - Sustained-attention - Maintaining a consistent behavioral response during continuous and repetitive activity. - - - Switched-attention - Having to switch attention between two or more modalities of presentation. - - - Top-down-attention - Voluntary allocation of attention to certain features. Sometimes this is referred to goal-oriented attention. - - relatedTag - Bottom-up-attention - - - - - Task-effect-evidence - The evidence supporting the conclusion that the event had the specified effect. - - Computational-evidence - A type of evidence in which data are produced, and/or generated, and/or analyzed on a computer. - - - External-evidence - A phenomenon that follows and is caused by some previous phenomenon. - - - Intended-effect - A phenomenon that is intended to follow and be caused by some previous phenomenon. - - - Behavioral-evidence - An indication or conclusion based on the behavior of an agent. - - - - Task-event-role - The purpose of an event with respect to the task. - - Experimental-stimulus - Part of something designed to elicit a response in the experiment. - - - Incidental - Usually associated with a sensory event intended to give instructions to the participant about the task or behavior. - - - Instructional - Usually associated with a sensory event intended to give instructions to the participant about the task or behavior. - - - Mishap - Unplanned disruption such as an equipment or experiment control abnormality or experimenter error. - - - Participant-response - Something related to a participant actions in performing the task. - - - Task-activity - Something that is part of the overall task or is necessary to the overall experiment but is not directly part of a stimulus-response cycle. Examples would be taking a survey or provided providing a silva sample. - - - Warning - Something that should warn the participant that the parameters of the task have been or are about to be exceeded such as a warning message about getting too close to the shoulder of the road in a driving task. - - - - Task-action-type - How an agent action should be interpreted in terms of the task specification. - - Appropriate-action - An action suitable or proper in the circumstances. - - relatedTag - Inappropriate-action - - - - Correct-action - An action that was a correct response in the context of the task. - - relatedTag - Incorrect-action - Indeterminate-action - - - - Correction - An action offering an improvement to replace a mistake or error. - - - Incorrect-action - An action considered wrong or incorrect in the context of the task. - - relatedTag - Correct-action - Indeterminate-action - - - - Imagined-action - Form a mental image or concept of something. This is used to identity something that only happened in the imagination of the participant as in imagined movements in motor imagery paradigms. - - - Inappropriate-action - An action not in keeping with what is correct or proper for the task. - - relatedTag - Appropriate-action - - - - Indeterminate-action - An action that cannot be distinguished between two or more possibibities in the current context. This tag might be applied when an outside evaluator or a classification algorithm cannot determine a definitive result. - - relatedTag - Correct-action - Incorrect-action - Miss - Near-miss - - - - Omitted-action - An expected response was skipped. - - - Miss - An action considered to be a failure in the context of the task. For example, if the agent is supposed to try to hit a target and misses. - - relatedTag - Near-miss - - - - Near-miss - An action barely satisfied the requirements of the task. In a driving experiment for example this could pertain to a narrowly avoided collision or other accident. - - relatedTag - Miss - - - - - Task-relationship - Specifying organizational importance of sub-tasks. - - Background-subtask - A part of the task which should be performed in the background as for example inhibiting blinks due to instruction while performing the primary task. - - - Primary-subtask - A part of the task which should be the primary focus of the participant. - - - - Task-stimulus-role - The role the stimulus plays in the task. - - Cue - A signal for an action, a pattern of stimuli indicating a particular response. - - - Distractor - A person or thing that distracts or a plausible but incorrect option in a multiple-choice question. In pyschological studies this is sometimes referred to as a foil. - - - Expected - Considered likely, probable or anticipated. Something of low information value as in frequent non-targets in an RSVP paradigm. - - relatedTag - Unexpected - - - suggestedTag - Target - - - - Extraneous - Irrelevant or unrelated to the subject being dealt with. - - - Feedback - An evaluative response to an inquiry, process, event, or activity. - - - Go-signal - An indicator to proceed with a planned action. - - relatedTag - Stop-signal - - - - Meaningful - Conveying significant or relevant information. - - - Newly-learned - Representing recently acquired information or understanding. - - - Non-informative - Something that is not useful in forming an opinion or judging an outcome. - - - Non-target - Something other than that done or looked for. Also tag Expected if the Non-target is frequent. - - relatedTag - Target - - - - Not-meaningful - Not having a serious, important, or useful quality or purpose. - - - Novel - Having no previous example or precedent or parallel. - - - Oddball - Something unusual, or infrequent. - - relatedTag - Unexpected - - - suggestedTag - Target - - - - Planned - Something that was decided on or arranged in advance. - - relatedTag - Unplanned - - - - Penalty - A disadvantage, loss, or hardship due to some action. - - - Priming - An implicit memory effect in which exposure to a stimulus influences response to a later stimulus. - - - Query - A sentence of inquiry that asks for a reply. - - - Reward - A positive reinforcement for a desired action, behavior or response. - - - Stop-signal - An indicator that the agent should stop the current activity. - - relatedTag - Go-signal - - - - Target - Something fixed as a goal, destination, or point of examination. - - - Threat - An indicator that signifies hostility and predicts an increased probability of attack. - - - Timed - Something planned or scheduled to be done at a particular time or lasting for a specified amount of time. - - - Unexpected - Something that is not anticipated. - - relatedTag - Expected - - - - Unplanned - Something that has not been planned as part of the task. - - relatedTag - Planned - - - - - - - Relation - Concerns the way in which two or more people or things are connected. - - Comparative-relation - Something considered in comparison to something else. - - Approximately-equal-to - (A (Approximately-equal-to B)) indicates that A and B have almost the same value. Here A and B could refer to sizes, orders, positions or other quantities. - - - Less-than - (A (Less-than B)) indicates that A is smaller than B. Here A and B could refer to sizes, orders, positions or other quantities. - - - Less-than-or-equal-to - (A (Less-than-or-equal-to B)) indicates that the relative size or order of A is smaller than or equal to B. - - - Greater-than - (A (Greater-than B)) indicates that the relative size or order of A is bigger than that of B. - - - Greater-than-or-equal-to - (A (Greater-than-or-equal-to B)) indicates that the relative size or order of A is bigger than or the same as that of B. - - - Equal-to - (A (Equal-to B)) indicates that the size or order of A is the same as that of B. - - - Not-equal-to - (A (Not-equal-to B)) indicates that the size or order of A is not the same as that of B. - - - - Connective-relation - Indicates two items are related in some way. - - Belongs-to - (A (Belongs-to B)) indicates that A is a member of B. - - - Connected-to - (A (Connected-to) B) indicates that A is related to B in some respect, usually through a direct link. - - - Contained-in - (A (Contained-in B)) indicates that A is completely inside of B. - - - Described-by - (A (Described-by B)) indicates that B provides information about A. - - - From-to - (A (From-to B)) indicates a directional relation from A to B. A is considered the source. - - - Group-of - (A (Group-of B)) indicates A is a group of items of type B. - - - Implied-by - (A (Implied-by B)) indicates B is suggested by A. - - - Interacts-with - (A (Interacts-with B)) indicates A and B interact, possibly reciprocally. - - - Member-of - (A (Member-of B)) indicates A is a member of group B. - - - Part-of - (A (Part-of B)) indicates A is a part of the whole B. - - - Performed-by - (A (Performed-by B)) Indicates that ction or procedure A was carried out by agent B. - - - Related-to - (A (Relative-to B)) indicates A is a part of the whole B. - - - - Directional-relation - A relationship indicating direction of change. - - Away-from - Go away from a place or object. - - - Towards - Moving in the direction of. A relation binding a relational quality or disposition to the relevant type of entity - - - - Spatial-relation - Indicating information about position. - - Above - (A (Adjacent-to B)) means A is in a place or position that is higher than B. - - - Across-from - (A (Across-from B)) means A is on the opposite side of something from B. - - - Adjacent-to - (A (Adjacent-to B)) indicates that A is next to B in time or space. - - - Ahead-of - (A (Ahead-of B)) indicates that A is further forward in time or space in B. - - - Around - (A (Around B)) means A is in or near the present place or situation of B. - - - Behind - (A (Behind B)) means A is at or to the far side of B, typically so as to be hidden by it. - - - Below - (A (Below B)) means A is in a place or position that is lower than the position of B. - - - Between - (A (Between, (B, C))) means A is in the space or interval separating B and C. - - - Bilateral-to - (A (Bilateral B)) means A is on both sides of B or affects both sides of B. - - - Bottom-edge-of - (A (Bottom-edge-of B)) means A is on the bottom most part or or near the boundary of B. - - relatedTag - Left-edge-of - Right-edge-of - Top-edge-of - - - - Boundary-of - (A (Boundary-of B)) means A is on or part of the edge or boundary of B. - - - Center-of - (A (Center-of B)) means A is at a point or or in an area that is approximately central within B. - - - Close-to - (A (Close-to B)) means A is at a small distance from or is located near in space to B. - - - Far-from - (A (Far-from B)) means A is at a large distance from or is not located near in space to B. - - - In-front-of - (A (In-front-of B)) means A is in a position just ahead or at the front part of B, potentially partially blocking B from view. - - - Left-edge-of - (A (Left-edge-of B)) means A is located on the left side of B on or near the boundary of B. - - relatedTag - Bottom-edge-of - Right-edge-of - Top-edge-of - - - - Left-side-of - (A (Left-side-of B)) means A is located on the left side of B usually as part of B. - - relatedTag - Right-side-of - - - - Lower-left-of - (A (Lower-left-of B)) means A is situated on the lower left part of B. This relation is often used to specify qualitative information about screen position. - - relatedTag - Lower-right-of - - - - Lower-right-of - (A (Lower-right-of B)) means A is situated on the lower right part of B. This relation is often used to specify qualitative information about screen position. - - relatedTag - Upper-left-of - - - - Outside-of - (A (Outside-of B)) means A is located in the space around but not including B. - - - Over - (A (over B)) means A above is above B so as to cover or protect or A extends over the a general area as from a from a vantage point. - - - Right-edge-of - (A (Right-edge-of B)) means A is located on the right side of B on or near the boundary of B. - - relatedTag - Bottom-edge-of - Left-edge-of - Top-edge-of - - - - Right-side-of - (A (Right-side-of B)) means A is located on the right side of B usually as part of B. - - relatedTag - Left-side-of - - - - To-left-of - (A (To-left-of B)) means A is located on or directed toward the side to the west of B when B is facing north. This term is used when A is not part of B. - - - To-right-of - (A (To-right-of B)) means A is located on or directed toward the side to the east of B when B is facing north. This term is used when A is not part of B. - - - Top-edge-of - (A (Top-edge-of B)) means A is on the uppermost part or or near the boundary of B. - - relatedTag - Left-edge-of - Right-edge-of - Bottom-edge-of - - - - Top-of - (A (Top-of B)) means A is on the uppermost part, side, or surface of B. - - - Underneath - (A (Underneath B)) means A is situated directly below and may be concealed by B. - - - Upper-left-of - (A (Upper-left-of B)) means A is situated on the upper left part of B. This relation is often used to specify qualitative information about screen position. - - relatedTag - Lower-left-of - - - - Upper-right-of - (A (Upper-right-of B)) means A is situated on the upper right part of B. This relation is often used to specify qualitative information about screen position. - - relatedTag - Lower-left-of - - - - Within - (A (Within B)) means A is on the inside of or contained in B. - - - - Temporal-relation - Any relationship which includes a temporal or time-based component. - - After - (A After B) means A happens at a time subsequent to a reference time related to B. - - - Asynchronous-with - (A Asynchronous-with B) means A happens at times not occurring at the same time or having the same period or phase as B. - - - Before - (A Before B) means A happens at a time earlier in time or order than B. - - - During - (A During B) means A happens at some point in a given period of time in which B is ongoing. - - - Synchronous-with - (A Synchronous-with B) means A happens at occurs at the same time or rate as B. - - - Waiting-for - (A Waiting-for B) means A pauses for something to happen in B. - - - - - - - accelerationUnits - - defaultUnits - m-per-s^2 - - - m-per-s^2 - - SIUnit - - - unitSymbol - - - - - angleUnits - - defaultUnits - radian - - - radian - - SIUnit - - - - rad - - SIUnit - - - unitSymbol - - - - degree - - - - areaUnits - - defaultUnits - m^2 - - - m^2 - - SIUnit - - - unitSymbol - - - - - currencyUnits - Units indicating the worth of something. - - defaultUnits - $ - - - dollar - - - $ - - unitPrefix - - - unitSymbol - - - - point - - - - frequencyUnits - - defaultUnits - Hz - - - hertz - - SIUnit - - - - Hz - - SIUnit - - - unitSymbol - - - - - intensityUnits - - defaultUnits - dB - - - dB - Intensity expressed as ratio to a threshold. Often used for sound intensity. - - unitSymbol - - - - candela - Units used to express light intensity. - - SIUnit - - - - cd - Units used to express light intensity. - - SIUnit - - - unitSymbol - - - - - jerkUnits - - defaultUnits - m-per-s^3 - - - m-per-s^3 - - unitSymbol - - - - - memorySizeUnits - - defaultUnits - B - - - byte - - SIUnit - - - - B - - SIUnit - - - unitSymbol - - - - - physicalLengthUnits - - defaultUnits - m - - - foot - - - inch - - - metre - - SIUnit - - - - m - - SIUnit - - - unitSymbol - - - - mile - - - - speedUnits - - defaultUnits - m-per-s - - - m-per-s - - SIUnit - - - unitSymbol - - - - mph - - unitSymbol - - - - kph - - unitSymbol - - - - - timeUnits - - defaultUnits - s - - - second - - SIUnit - - - - s - - SIUnit - - - unitSymbol - - - - day - - - minute - - - hour - Should be in 24-hour format. - - - - volumeUnits - - defaultUnits - m^3 - - - m^3 - - SIUnit - - - unitSymbol - - - - - weightUnits - - defaultUnits - g - - - g - - SIUnit - - - unitSymbol - - - - gram - - SIUnit - - - - pound - - - lb - - - - - - deca - SI unit multiple representing 10^1 - - SIUnitModifier - - - - da - SI unit multiple representing 10^1 - - SIUnitSymbolModifier - - - - hecto - SI unit multiple representing 10^2 - - SIUnitModifier - - - - h - SI unit multiple representing 10^2 - - SIUnitSymbolModifier - - - - kilo - SI unit multiple representing 10^3 - - SIUnitModifier - - - - k - SI unit multiple representing 10^3 - - SIUnitSymbolModifier - - - - mega - SI unit multiple representing 10^6 - - SIUnitModifier - - - - M - SI unit multiple representing 10^6 - - SIUnitSymbolModifier - - - - giga - SI unit multiple representing 10^9 - - SIUnitModifier - - - - G - SI unit multiple representing 10^9 - - SIUnitSymbolModifier - - - - tera - SI unit multiple representing 10^12 - - SIUnitModifier - - - - T - SI unit multiple representing 10^12 - - SIUnitSymbolModifier - - - - peta - SI unit multiple representing 10^15 - - SIUnitModifier - - - - P - SI unit multiple representing 10^15 - - SIUnitSymbolModifier - - - - exa - SI unit multiple representing 10^18 - - SIUnitModifier - - - - E - SI unit multiple representing 10^18 - - SIUnitSymbolModifier - - - - zetta - SI unit multiple representing 10^21 - - SIUnitModifier - - - - Z - SI unit multiple representing 10^21 - - SIUnitSymbolModifier - - - - yotta - SI unit multiple representing 10^24 - - SIUnitModifier - - - - Y - SI unit multiple representing 10^24 - - SIUnitSymbolModifier - - - - deci - SI unit submultiple representing 10^-1 - - SIUnitModifier - - - - d - SI unit submultiple representing 10^-1 - - SIUnitSymbolModifier - - - - centi - SI unit submultiple representing 10^-2 - - SIUnitModifier - - - - c - SI unit submultiple representing 10^-2 - - SIUnitSymbolModifier - - - - milli - SI unit submultiple representing 10^-3 - - SIUnitModifier - - - - m - SI unit submultiple representing 10^-3 - - SIUnitSymbolModifier - - - - micro - SI unit submultiple representing 10^-6 - - SIUnitModifier - - - - u - SI unit submultiple representing 10^-6 - - SIUnitSymbolModifier - - - - nano - SI unit submultiple representing 10^-9 - - SIUnitModifier - - - - n - SI unit submultiple representing 10^-9 - - SIUnitSymbolModifier - - - - pico - SI unit submultiple representing 10^-12 - - SIUnitModifier - - - - p - SI unit submultiple representing 10^-12 - - SIUnitSymbolModifier - - - - femto - SI unit submultiple representing 10^-15 - - SIUnitModifier - - - - f - SI unit submultiple representing 10^-15 - - SIUnitSymbolModifier - - - - atto - SI unit submultiple representing 10^-18 - - SIUnitModifier - - - - a - SI unit submultiple representing 10^-18 - - SIUnitSymbolModifier - - - - zepto - SI unit submultiple representing 10^-21 - - SIUnitModifier - - - - z - SI unit submultiple representing 10^-21 - - SIUnitSymbolModifier - - - - yocto - SI unit submultiple representing 10^-24 - - SIUnitModifier - - - - y - SI unit submultiple representing 10^-24 - - SIUnitSymbolModifier - - - - - - dateTimeClass - Date-times should conform to ISO8601 date-time format YYYY-MM-DDThh:mm:ss. Any variation on the full form is allowed. - - allowedCharacter - digits - T - - - : - - - - nameClass - Value class designating values that have the characteristics of node names. The allowed characters are alphanumeric, hyphen, and underbar. - - allowedCharacter - letters - digits - _ - - - - - - numericClass - Value must be a valid numerical value. - - allowedCharacter - digits - E - e - + - - - . - - - - posixPath - Posix path specification. - - allowedCharacter - digits - letters - / - : - - - - textClass - Value class designating values that have the characteristics of text such as in descriptions. - - allowedCharacter - letters - digits - blank - + - - - : - ; - . - / - ( - ) - ? - * - % - $ - @ - - - - - - allowedCharacter - A schema attribute of value classes specifying a special character that is allowed in expressing the value of a placeholder. Normally the allowed characters are listed individually. However, the word letters designates the upper and lower case alphabetic characters and the word digits designates the digits 0-9. The word blank designates the blank character. - - valueClassProperty - - - - defaultUnits - A schema attribute of unit classes specifying the default units to use if the placeholder has a unit class but the substituted value has no units. - - unitClassProperty - - - - extensionAllowed - A schema attribute indicating that users can add unlimited levels of child nodes under this tag. This tag is propagated to child nodes with the exception of the hashtag placeholders. - - boolProperty - - - - recommended - A schema attribute indicating that the event-level HED string should include this tag. - - boolProperty - - - - relatedTag - A schema attribute suggesting HED tags that are closely related to this tag. This attribute is used by tagging tools. - - - requireChild - A schema attribute indicating that one of the node elements descendants must be included when using this tag. - - boolProperty - - - - required - A schema attribute indicating that every event-level HED string should include this tag. - - boolProperty - - - - SIUnit - A schema attribute indicating that this unit element is an SI unit and can be modified by multiple and submultiple names. Note that some units such as byte are designated as SI units although they are not part of the standard. - - boolProperty - - - unitProperty - - - - SIUnitModifier - A schema attribute indicating that this SI unit modifier represents a multiple or submultiple of a base unit rather than a unit symbol. - - boolProperty - - - unitModifierProperty - - - - SIUnitSymbolModifier - A schema attribute indicating that this SI unit modifier represents a multiple or submultiple of a unit symbol rather than a base symbol. - - boolProperty - - - unitModifierProperty - - - - suggestedTag - A schema attribute that indicates another tag that is often associated with this tag. This attribute is used by tagging tools to provide tagging suggestions. - - - tagGroup - A schema attribute indicating the tag can only appear inside a tag group. - - boolProperty - - - - takesValue - A schema attribute indicating the tag is a hashtag placeholder that is expected to be replaced with a user-defined value. - - boolProperty - - - - topLevelTagGroup - A schema attribute indicating that this tag (or its descendants) can only appear in a top-level tag group. - - boolProperty - - - - unique - A schema attribute indicating that only one of this tag or its descendants can be used in the event-level HED string. - - boolProperty - - - - unitClass - A schema attribute specifying which unit class this value tag belongs to. - - - unitPrefix - A schema attribute applied specifically to unit elements to designate that the unit indicator is a prefix (e.g., dollar sign in the currency units). - - boolProperty - - - unitProperty - - - - unitSymbol - A schema attribute indicating this tag is an abbreviation or symbol representing a type of unit. Unit symbols represent both the singular and the plural and thus cannot be pluralized. - - boolProperty - - - unitProperty - - - - valueClass - A schema attribute specifying which value class this value tag belongs to. - - - - - boolProperty - Indicates that the schema attribute represents something that is either true or false and does not have a value. Attributes without this value are assumed to have string values. - - - unitClassProperty - Indicates that the schema attribute is meant to be applied to unit classes. - - - unitModifierProperty - Indicates that the schema attribute is meant to be applied to unit modifier classes. - - - unitProperty - Indicates that the schema attribute is meant to be applied to units within a unit class. - - - valueClassProperty - Indicates that the schema attribute is meant to be applied to value classes. - - - This is an updated version of the schema format. The properties are now part of the schema. The schema attributes are designed to be checked in software rather than hard-coded. The schema attributes, themselves have properties. - - diff --git a/hedcode/data/schema_data/HED8.0.0.mediawiki b/hedcode/data/schema_data/HED8.2.0.mediawiki similarity index 73% rename from hedcode/data/schema_data/HED8.0.0.mediawiki rename to hedcode/data/schema_data/HED8.2.0.mediawiki index 3a68cfe8..26d775d0 100644 --- a/hedcode/data/schema_data/HED8.0.0.mediawiki +++ b/hedcode/data/schema_data/HED8.2.0.mediawiki @@ -1,12 +1,14 @@ -HED version="8.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="https://github.com/hed-standard/hed-specification/raw/master/hedxml/HED8.0.0.xsd" +HED version="8.2.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="https://github.com/hed-standard/hed-specification/raw/master/hedxml/HED8.0.0.xsd" '''Prologue''' -This schema is the first official release that includes an xsd and requires unit class, unit modifier, value class, schema attribute and property sections. +The HED standard schema is a hierarchically-organized vocabulary for annotating events and experimental structure. HED annotations consist of comma-separated tags drawn from this vocabulary. This vocabulary can be augmented by terms drawn from specialized library schema. + +Each term in this vocabulary has a human-readable description and may include additional attributes that give additional properties or that specify how tools should treat the tag during analysis. The meaning of these attributes is described in the Additional schema properties section. !# start schema '''Event''' {suggestedTag=Task-property}[Something that happens at a given time and (typically) place. Elements of this tag subtree designate the general category in which an event falls.] -* Sensory-event {suggestedTag=Task-event-role, suggestedTag=Attribute/Sensory}[Something perceivable by the participant. An event meant to be an experimental stimulus should include the tag Task-property/Task-event-role/Experimental-stimulus.] +* Sensory-event {suggestedTag=Task-event-role, suggestedTag=Sensory-presentation}[Something perceivable by the participant. An event meant to be an experimental stimulus should include the tag Task-property/Task-event-role/Experimental-stimulus.] * Agent-action {suggestedTag=Task-event-role, suggestedTag=Agent}[Any action engaged in by an agent (see the Agent subtree for agent categories). A participant response to an experiment stimulus should include the tag Agent-property/Agent-task-role/Experiment-participant.] * Data-feature {suggestedTag=Data-property}[An event marking the occurrence of a data feature such as an interictal spike or alpha burst that is often added post hoc to the data record.] * Experiment-control [An event pertaining to the physical control of the experiment during its operation.] @@ -180,6 +182,7 @@ This schema is the first official release that includes an xsd and requires unit '''Item''' {extensionAllowed}[An independently existing thing (living or nonliving).] * Biological-item [An entity that is biological, that is related to living organisms.] ** Anatomical-item [A biological structure, system, fluid or other substance excluding single molecular entities.] +*** Body [The biological structure representing an organism.] *** Body-part [Any part of an organism.] **** Head [The upper part of the human body, or the front or upper part of the body of an animal, typically separated from the rest of the body by a neck, and containing the brain, mouth, and sense organs.] ***** Hair [The filamentous outgrowth of the epidermis.] @@ -210,7 +213,7 @@ This schema is the first official release that includes an xsd and requires unit ***** Torso-back [The rear surface of the human body from the shoulders to the hips.] ***** Buttocks [The round fleshy parts that form the lower rear area of a human trunk.] ***** Torso-chest [The anterior side of the thorax from the neck to the abdomen.] -***** Gentalia [The external organs of reproduction.] +***** Gentalia {deprecatedFrom=8.1.0}[The external organs of reproduction.] ***** Hip [The lateral prominence of the pelvis from the waist to the thigh.] ***** Waist [The abdominal circumference at the navel.] **** Upper-extremity [Refers to the whole superior limb (shoulder, arm, elbow, wrist, hand).] @@ -232,7 +235,7 @@ This schema is the first official release that includes an xsd and requires unit *** Animal [A living organism that has membranous cell walls, requires oxygen and organic foods, and is capable of voluntary movement.] *** Human [The bipedal primate mammal Homo sapiens.] *** Plant [Any living organism that typically synthesizes its food from inorganic substances and possesses cellulose cell walls.] -* Language-item {suggestedTag=Attribute/Sensory}[An entity related to a systematic means of communicating by the use of sounds, symbols, or gestures.] +* Language-item {suggestedTag=Sensory-presentation}[An entity related to a systematic means of communicating by the use of sounds, symbols, or gestures.] ** Character [A mark or symbol used in writing.] ** Clause [A unit of grammatical organization next below the sentence in rank, usually consisting of a subject and predicate.] ** Glyph [A hieroglyphic character, symbol, or pictograph.] @@ -244,12 +247,13 @@ This schema is the first official release that includes an xsd and requires unit ** Syllable [A unit of spoken language larger than a phoneme.] ** Textblock [A block of text.] ** Word [A word is the smallest free form (an item that may be expressed in isolation with semantic or pragmatic content) in a language.] -* Object {suggestedTag=Attribute/Sensory}[Something perceptible by one or more of the senses, especially by vision or touch. A material thing.] +* Object {suggestedTag=Sensory-presentation}[Something perceptible by one or more of the senses, especially by vision or touch. A material thing.] ** Geometric-object [An object or a representation that has structure and topology in space.] *** Pattern [An arrangement of objects, facts, behaviors, or other things which have scientific, mathematical, geometric, statistical, or other meaning.] **** Dots [A small round mark or spot.] **** LED-pattern [A pattern created by lighting selected members of a fixed light emitting diode array.] *** 2D-shape [A planar, two-dimensional shape.] +**** Arrow [A shape with a pointed end indicating direction.]. **** Clockface [The dial face of a clock. A location identifier based on clockface numbering or anatomic subregion.] **** Cross [A figure or mark formed by two intersecting lines crossing at their midpoints.] **** Dash [A horizontal stroke in writing or printing to mark a pause or break in sense or to represent omitted letters or words.] @@ -330,6 +334,7 @@ This schema is the first official release that includes an xsd and requires unit **** Note [A brief written record.] **** Book [A volume made up of pages fastened along one edge and enclosed between protective covers.] **** Notebook [A book for notes or memoranda.] +**** Questionnaire [A document consisting of questions and possibly responses, depending on whether it has been filled out.] *** Furnishing [Furniture, fittings, and other decorative accessories, such as curtains and carpets, for a house or room.] *** Manufactured-material [Substances created or extracted from raw materials.] **** Ceramic [A hard, brittle, heat-resistant and corrosion-resistant material made by shaping and then firing a nonmetallic mineral, such as clay, at a high temperature.] @@ -389,7 +394,7 @@ This schema is the first official release that includes an xsd and requires unit *** Vocalized-sound [Musical sound produced by vocal cords in a biological agent.] ** Named-animal-sound [A sound recognizable as being associated with particular animals.] *** Barking [Sharp explosive cries like sounds made by certain animals, especially a dog, fox, or seal.] -*** Bleating [Wavering cries like sounds made by a sheep, goat, or calf. ] +*** Bleating [Wavering cries like sounds made by a sheep, goat, or calf.] *** Crowing [Loud shrill sounds characteristic of roosters.] *** Chirping [Short, sharp, high-pitched noises like sounds made by small birds or an insects.] *** Growling [Low guttural sounds like those that made in the throat by a hostile dog or other animal.] @@ -416,6 +421,7 @@ This schema is the first official release that includes an xsd and requires unit **** Anesthetized [Having lost sensation to pain or having senses dulled due to the effects of an anesthetic.] **** Asleep [Having entered a periodic, readily reversible state of reduced awareness and metabolic activity, usually accompanied by physical relaxation and brain activity.] **** Attentive [Concentrating and focusing mental energy on the task or surroundings.] +**** Distracted [Lacking in concentration because of being preoccupied.] **** Awake [In a non sleeping state.] **** Brain-dead [Characterized by the irreversible absence of cortical and brain stem functioning.] **** Comatose [In a state of profound unconsciousness associated with markedly depressed cerebral activity.] @@ -461,7 +467,7 @@ This schema is the first official release that includes an xsd and requires unit **** On-treadmill [Ambulation on an exercise apparatus with an endless moving belt to support moving in place.] **** Prone [Positioned in a recumbent body position whereby the person lies on its stomach and faces downward.] **** Sitting [In a seated position.] -**** Standing [Assuming or maintaining an erect upright position. ] +**** Standing [Assuming or maintaining an erect upright position.] **** Seated-with-chin-rest [Using a device that supports the chin and head.] ** Agent-task-role [The function or part that is ascribed to an agent in performing the task.] *** Experiment-actor [An agent who plays a predetermined role to create the experiment scenario.] @@ -470,7 +476,7 @@ This schema is the first official release that includes an xsd and requires unit *** Experimenter [Person who is the owner of the experiment and has its responsibility.] ** Agent-trait [A genetically, environmentally, or socially determined characteristic of an agent.] *** Age [Length of time elapsed time since birth of the agent.] -**** # {takesValue} +**** # {takesValue, valueClass=numericClass} *** Agent-experience-level [Amount of skill or knowledge that the agent has as pertains to the task.] **** Expert-level {relatedTag=Intermediate-experience-level, relatedTag=Novice-level}[Having comprehensive and authoritative knowledge of or skill in a particular area related to the task.] **** Intermediate-experience-level {relatedTag=Expert-level, relatedTag=Novice-level}[Having a moderate amount of knowledge or skill related to the task.] @@ -480,31 +486,35 @@ This schema is the first official release that includes an xsd and requires unit **** Female [Biological sex of an individual with female sexual organs such ova.] **** Male [Biological sex of an individual with male sexual organs producing sperm.] **** Intersex [Having genitalia and/or secondary sexual characteristics of indeterminate sex.] +*** Ethnicity [Belong to a social group that has a common national or cultural tradition. Use with Label to avoid extension.] *** Handedness [Individual preference for use of a hand, known as the dominant hand.] **** Left-handed [Preference for using the left hand or foot for tasks requiring the use of a single hand or foot.] **** Right-handed [Preference for using the right hand or foot for tasks requiring the use of a single hand or foot.] **** Ambidextrous [Having no overall dominance in the use of right or left hand or foot in the performance of tasks that require one hand or foot.] +*** Race [Belonging to a group sharing physical or social qualities as defined within a specified society. Use with Label to avoid extension.] * Data-property {extensionAllowed}[Something that pertains to data or information.] ** Data-marker [An indicator placed to mark something.] +*** Data-break-marker [An indicator place to indicate a gap in the data.] *** Temporal-marker[An indicator placed at a particular time in the data.] -**** Onset {topLevelTagGroup}[Labels the start or beginning of something, usually an event.] -**** Offset {topLevelTagGroup}[Labels the time at which something stops.] +**** Inset {topLevelTagGroup,reserved,relatedTag=Onset,relatedTag=Offset}[Marks an intermediate point in an ongoing event of temporal extent.] +**** Onset {topLevelTagGroup,reserved,relatedTag=Inset,relatedTag=Offset}[Marks the start of an ongoing event of temporal extent.] +**** Offset {topLevelTagGroup,reserved,relatedTag=Onset, relatedTag=Inset}[Marks the end of an event of temporal extent.] **** Pause [Indicates the temporary interruption of the operation a process and subsequently wait for a signal to continue.] **** Time-out [A cancellation or cessation that automatically occurs when a predefined interval of time has passed without a certain event occurring.] **** Time-sync [A synchronization signal whose purpose to help synchronize different signals or processes. Often used to indicate a marker inserted into the recorded data to allow post hoc synchronization of concurrently recorded data streams.] ** Data-resolution [Smallest change in a quality being measured by an sensor that causes a perceptible change.] *** Printer-resolution [Resolution of a printer, usually expressed as the number of dots-per-inch for a printer.] -**** # {takesValue} +**** # {takesValue, valueClass=numericClass} *** Screen-resolution [Resolution of a screen, usually expressed as the of pixels in a dimension for a digital display device.] -**** # {takesValue} +**** # {takesValue, valueClass=numericClass} *** Sensory-resolution [Resolution of measurements by a sensing device.] -**** # {takesValue} +**** # {takesValue, valueClass=numericClass} *** Spatial-resolution [Linear spacing of a spatial measurement.] -**** # {takesValue} +**** # {takesValue, valueClass=numericClass} *** Spectral-resolution [Measures the ability of a sensor to resolve features in the electromagnetic spectrum.] -**** # {takesValue} +**** # {takesValue, valueClass=numericClass} *** Temporal-resolution [Measures the ability of a sensor to resolve features in time.] -**** # {takesValue} +**** # {takesValue, valueClass=numericClass} ** Data-source-type [The type of place, person, or thing from which the data comes or can be obtained.] *** Computed-feature[A feature computed from the data by a tool. This tag should be grouped with a label of the form Toolname_propertyName.] *** Computed-prediction [A computed extrapolation of known data.] @@ -515,16 +525,16 @@ This schema is the first official release that includes an xsd and requires unit *** Categorical-value [Indicates that something can take on a limited and usually fixed number of possible values.] **** Categorical-class-value [Categorical values that fall into discrete classes such as true or false. The grouping is absolute in the sense that it is the same for all participants.] ***** All {relatedTag=Some, relatedTag=None}[To a complete degree or to the full or entire extent.] -***** Correct {relatedTag=Incorrect}[Free from error. Especially conforming to fact or truth.] +***** Correct {relatedTag=Wrong}[Free from error. Especially conforming to fact or truth.] ***** Explicit {relatedTag=Implicit}[Stated clearly and in detail, leaving no room for confusion or doubt.] ***** False {relatedTag=True}[Not in accordance with facts, reality or definitive criteria.] ***** Implicit {relatedTag=Explicit}[Implied though not plainly expressed.] -***** Invalid {relatedTag=Valid}[Not true because based on erroneous information or unsound reasoning or not conforming to the correct format or specifications.] +***** Invalid {relatedTag=Valid}[Not allowed or not conforming to the correct format or specifications.] ***** None {relatedTag=All, relatedTag=Some}[No person or thing, nobody, not any.] ***** Some {relatedTag=All, relatedTag=None}[At least a small amount or number of, but not a large amount of, or often.] ***** True {relatedTag=False}[Conforming to facts, reality or definitive criteria.] ***** Valid {relatedTag=Invalid}[Allowable, usable, or acceptable.] -***** Wrong {relatedTag=Correct}[Not accurate, correct, or appropriate.] +***** Wrong {relatedTag=Correct}[Inaccurate or not correct.] **** Categorical-judgment-value [Categorical values that are based on the judgment or perception of the participant such familiar and famous.] ***** Abnormal {relatedTag=Normal}[Deviating in any way from the state, position, structure, condition, behavior, or rule which is considered a norm.] ***** Asymmetrical {relatedTag=Symmetrical}[Lacking symmetry or having parts that fail to correspond to one another in shape, size, or arrangement.] @@ -534,7 +544,7 @@ This schema is the first official release that includes an xsd and requires unit ***** Constrained {relatedTag=Unconstrained}[Keeping something within particular limits or bounds.] ***** Disordered {relatedTag=Ordered}[Not neatly arranged. Confused and untidy. A structural quality in which the parts of an object are non-rigid.] ***** Familiar {relatedTag=Unfamiliar, relatedTag=Famous}[Recognized, familiar, or within the scope of knowledge.] -***** Famous {relatedTag=Familiar,relatedTag=Unfamiliar}[A person who has a high degree of recognition by the general population for his or her success or accomplishments. A famous person.] +***** Famous {relatedTag=Familiar, relatedTag=Unfamiliar}[A person who has a high degree of recognition by the general population for his or her success or accomplishments. A famous person.] ***** Inaudible {relatedTag=Audible}[A sound below the threshold of perception of the participant.] ***** Incongruent {relatedTag=Congruent}[Not in agreement or harmony.] ***** Involuntary {relatedTag=Voluntary}[An action that is not made by choice. In the body, involuntary actions (such as blushing) occur automatically, and cannot be controlled by choice.] @@ -548,12 +558,13 @@ This schema is the first official release that includes an xsd and requires unit ***** Unmasked {relatedTag=Masked}[Information is revealed.] ***** Voluntary {relatedTag=Involuntary}[Using free will or design; not forced or compelled; controlled by individual volition.] **** Categorical-level-value [Categorical values based on dividing a continuous variable into levels such as high and low.] -***** Cold {relatedTag=Hot}[Characterized by an absence of heat.] +***** Cold {relatedTag=Hot}[Having an absence of heat.] ***** Deep {relatedTag=Shallow}[Extending relatively far inward or downward.] ***** High {relatedTag=Low, relatedTag=Medium}[Having a greater than normal degree, intensity, or amount.] -***** Hot {relatedTag=Cold}[Characterized by an excess of heat.] +***** Hot {relatedTag=Cold}[Having an excess of heat.] +***** Large {relatedTag=Small}[Having a great extent such as in physical dimensions, period of time, amplitude or frequency.] ***** Liminal {relatedTag=Subliminal, relatedTag=Supraliminal}[Situated at a sensory threshold that is barely perceptible or capable of eliciting a response.] -***** Loud {relatedTag=Quiet}[Characterizing a perceived high intensity of sound.] +***** Loud {relatedTag=Quiet}[Having a perceived high intensity of sound.] ***** Low {relatedTag=High}[Less than normal in degree, intensity or amount.] ***** Medium {relatedTag=Low, relatedTag=High}[Mid-way between small and large in number, quantity, magnitude or extent.] ***** Negative {relatedTag=Positive}[Involving disadvantage or harm.] @@ -561,6 +572,7 @@ This schema is the first official release that includes an xsd and requires unit ***** Quiet {relatedTag=Loud}[Characterizing a perceived low intensity of sound.] ***** Rough {relatedTag=Smooth}[Having a surface with perceptible bumps, ridges, or irregularities.] ***** Shallow {relatedTag=Deep}[Having a depth which is relatively low.] +***** Small {relatedTag=Large}[Having a small extent such as in physical dimensions, period of time, amplitude or frequency.] ***** Smooth {relatedTag=Rough}[Having a surface free from bumps, ridges, or irregularities.] ***** Subliminal {relatedTag=Liminal, relatedTag=Supraliminal}[Situated below a sensory threshold that is imperceptible or not capable of eliciting a response.] ***** Supraliminal {relatedTag=Liminal, relatedTag=Subliminal}[Situated above a sensory threshold that is perceptible or capable of eliciting a response.] @@ -571,20 +583,24 @@ This schema is the first official release that includes an xsd and requires unit ***** Downward {relatedTag=Leftward,relatedTag=Rightward,relatedTag=Upward}[Moving or leading toward a lower place or level.] ***** Forward {relatedTag=Backward}[At or near or directed toward the front.] ***** Horizontally-oriented {relatedTag=Vertically-oriented}[Oriented parallel to or in the plane of the horizon.] -***** Leftward {relatedTag=Downward,relatedTag=Rightward,relatedTag=Upward}[Going toward or facing the left.] +***** Leftward {relatedTag=Downward, relatedTag=Rightward,relatedTag=Upward}[Going toward or facing the left.] ***** Oblique {relatedTag=Rotated}[Slanting or inclined in direction, course, or position that is neither parallel nor perpendicular nor right-angular.] -***** Rightward {relatedTag=Downward,relatedTag=Leftward,relatedTag=Upward}[Going toward or situated on the right.] +***** Rightward {relatedTag=Downward, relatedTag=Leftward,relatedTag=Upward}[Going toward or situated on the right.] ***** Rotated [Positioned offset around an axis or center.] ***** Upward {relatedTag=Downward,relatedTag=Leftward,relatedTag=Rightward}[Moving, pointing, or leading to a higher place, point, or level.] ***** Vertically-oriented {relatedTag=Horizontally-oriented}[Oriented perpendicular to the plane of the horizon.] *** Physical-value [The value of some physical property of something.] **** Weight [The relative mass or the quantity of matter contained by something.] ***** # {takesValue, valueClass=numericClass, unitClass=weightUnits} +**** Temperature [A measure of hot or cold based on the average kinetic energy of the atoms or molecules in the system.] +***** # {takesValue, valueClass=numericClass, unitClass=temperatureUnits} *** Quantitative-value [Something capable of being estimated or expressed with numeric values.] -**** Fraction [A numerical value betwee 0 and 1.] +**** Fraction [A numerical value between 0 and 1.] ***** # {takesValue, valueClass=numericClass} **** Item-count [The integer count of something which is usually grouped with the entity it is counting. (Item-count/3, A) indicates that 3 of A have occurred up to this point.] -***** # {takesValue, valueClass=numericClass} +***** # {takesValue, valueClass=numericClass} +**** Item-index [The index of an item in a collection, sequence or other structure. (A (Item-index/3, B)) means that A is item number 3 in B.] +***** # {takesValue, valueClass=numericClass} **** Item-interval [An integer indicating how many items or entities have passed since the last one of these. An item interval of 0 indicates the current item.] ***** # {takesValue, valueClass=numericClass} **** Percentage [A fraction or ratio with 100 understood as the denominator.] @@ -629,8 +645,8 @@ This schema is the first official release that includes an xsd and requires unit ***** Temporal-rate [The number of items per unit of time.] ****** # {takesValue, valueClass=numericClass, unitClass=frequencyUnits} **** Spatial-value [Value of an item involving space.] -***** Angle{unitClass=angleUnits}[The amount of inclination of one line to another or the plane of one object to another.] -****** # {takesValue, valueClass=numericClass} +***** Angle[The amount of inclination of one line to another or the plane of one object to another.] +****** # {takesValue, unitClass=angleUnits, valueClass=numericClass} ***** Distance [A measure of the space separating two objects or points.] ****** # {takesValue, valueClass=numericClass, unitClass=physicalLengthUnits} ***** Position [A reference to the alignment of an object, a particular situation or view of a situation, or the location of an object. Coordinates with respect a specified frame of reference or the default Screen-frame if no frame is given.] @@ -654,9 +670,9 @@ This schema is the first official release that includes an xsd and requires unit ****** Volume [The amount of three dimensional space occupied by an object or the capacity of a space or container.] ******* # {takesValue, valueClass=numericClass, unitClass=volumeUnits} **** Temporal-value [A characteristic of or relating to time or limited by time.] -***** Delay [Time during which some action is awaited.] +***** Delay {topLevelTagGroup, reserved, relatedTag=Duration}[The time at which an event start time is delayed from the current onset time. This tag defines the start time of an event of temporal extent and may be used with the Duration tag.] ****** # {takesValue, valueClass=numericClass, unitClass=timeUnits} -***** Duration [The period of time during which something occurs or continues.] +***** Duration {topLevelTagGroup, reserved, relatedTag=Delay}[The period of time during which an event occurs. This tag defines the end time of an event of temporal extent and may be used with the Delay tag.] ****** # {takesValue, valueClass=numericClass, unitClass=timeUnits} ***** Time-interval [The period of time separating two instances, events, or occurrences.] ****** # {takesValue, valueClass=numericClass, unitClass=timeUnits} @@ -727,7 +743,7 @@ This schema is the first official release that includes an xsd and requires unit **** # {takesValue}[Usually is a semantic version.] ** Parameter [Something user-defined for this experiment.] *** Parameter-label [The name of the parameter.] -**** # {takesValue, valueClass=labelClass} +**** # {takesValue, valueClass=nameClass} *** Parameter-value [The value of the parameter.] **** # {takesValue, valueClass=textClass} * Organizational-property [Relating to an organization or the action of organizing something.] @@ -737,13 +753,13 @@ This schema is the first official release that includes an xsd and requires unit *** # {takesValue, valueClass=nameClass}[Name of the condition variable.] ** Control-variable [An aspect of the experiment that is fixed throughout the study and usually is explicitly controlled.] *** # {takesValue, valueClass=nameClass}[Name of the control variable.] -** Def {requireChild} [A HED-specific utility tag used with a defined name to represent the tags associated with that definition.] +** Def {requireChild,reserved} [A HED-specific utility tag used with a defined name to represent the tags associated with that definition.] *** # {takesValue, valueClass=nameClass}[Name of the definition.] -** Def-expand {requireChild, tagGroup} [A HED specific utility tag that is grouped with an expanded definition. The child value of the Def-expand is the name of the expanded definition.] +** Def-expand {requireChild,reserved,tagGroup} [A HED specific utility tag that is grouped with an expanded definition. The child value of the Def-expand is the name of the expanded definition.] *** # {takesValue, valueClass=nameClass} -** Definition {requireChild, topLevelTagGroup}[A HED-specific utility tag whose child value is the name of the concept and the tag group associated with the tag is an English language explanation of a concept.] +** Definition {requireChild,reserved,topLevelTagGroup}[A HED-specific utility tag whose child value is the name of the concept and the tag group associated with the tag is an English language explanation of a concept.] *** # {takesValue, valueClass=nameClass}[Name of the definition.] -** Event-context {topLevelTagGroup, unique}[A special HED tag inserted as part of a top-level tag group to contain information about the interrelated conditions under which the event occurs. The event context includes information about other events that are ongoing when this event happens.] +** Event-context {reserved,topLevelTagGroup,unique}[A special HED tag inserted as part of a top-level tag group to contain information about the interrelated conditions under which the event occurs. The event context includes information about other events that are ongoing when this event happens.] ** Event-stream [A special HED tag indicating that this event is a member of an ordered succession of events.] *** # {takesValue, valueClass=nameClass}[Name of the event stream.] ** Experimental-intertrial [A tag used to indicate a part of the experiment between trials usually where nothing is happening.] @@ -762,7 +778,7 @@ This schema is the first official release that includes an xsd and requires unit ** Sensory-attribute [A sensory characteristic associated with another entity.] *** Auditory-attribute [Pertaining to the sense of hearing.] **** Loudness [Perceived intensity of a sound.] -***** # {takesValue, valueClass=numericClass} +***** # {takesValue, valueClass=numericClass, valueClass=nameClass} **** Pitch [A perceptual property that allows the user to order sounds on a frequency scale.] ***** # {takesValue, valueClass=numericClass, unitClass=frequencyUnits} **** Sound-envelope [Description of how a sound changes over time.] @@ -770,12 +786,14 @@ This schema is the first official release that includes an xsd and requires unit ****** # {takesValue, valueClass=numericClass, unitClass=timeUnits} ***** Sound-envelope-decay [The time taken for the subsequent run down from the attack level to the designated sustain level.] ****** # {takesValue, valueClass=numericClass, unitClass=timeUnits} -***** Sound-envelope-release [The time taken for the level to decay from the sustain level to zero after the key is released] +***** Sound-envelope-release [The time taken for the level to decay from the sustain level to zero after the key is released.] ****** # {takesValue, valueClass=numericClass, unitClass=timeUnits} ***** Sound-envelope-sustain [The time taken for the main sequence of the sound duration, until the key is released.] ****** # {takesValue, valueClass=numericClass, unitClass=timeUnits} **** Timbre [The perceived sound quality of a singing voice or musical instrument.] -***** # {takesValue, valueClass=labelClass} +***** # {takesValue, valueClass=nameClass} +**** Sound-volume [The sound pressure level (SPL) usually the ratio to a reference signal estimated as the lower bound of hearing.] +***** # {takesValue, valueClass=numericClass, unitClass=intensityUnits} *** Gustatory-attribute [Pertaining to the sense of taste.] **** Bitter [Having a sharp, pungent taste.] **** Salty [Tasting of or like salt.] @@ -794,178 +812,178 @@ This schema is the first official release that includes an xsd and requires unit *** Vestibular-attribute [Pertaining to the sense of balance or body position.] *** Visual-attribute [Pertaining to the sense of sight.] **** Color [The appearance of objects (or light sources) described in terms of perception of their hue and lightness (or brightness) and saturation.] -***** CSS-color [One of 140 colors supported by all browsers. For more details such as the color RGB or HEX values, check: https://www.w3schools.com/colors/colors_groups.asp] -****** Blue-color [CSS color group] -******* CadetBlue [CSS-color 0x5F9EA0] -******* SteelBlue [CSS-color 0x4682B4] -******* LightSteelBlue [CSS-color 0xB0C4DE] -******* LightBlue [CSS-color 0xADD8E6] -******* PowderBlue [CSS-color 0xB0E0E6] -******* LightSkyBlue [CSS-color 0x87CEFA] -******* SkyBlue [CSS-color 0x87CEEB] -******* CornflowerBlue [CSS-color 0x6495ED] -******* DeepSkyBlue [CSS-color 0x00BFFF] -******* DodgerBlue [CSS-color 0x1E90FF] -******* RoyalBlue [CSS-color 0x4169E1] -******* Blue [CSS-color 0x0000FF] -******* MediumBlue [CSS-color 0x0000CD] -******* DarkBlue [CSS-color 0x00008B] -******* Navy [CSS-color 0x000080] -******* MidnightBlue [CSS-color 0x191970] -****** Brown-color [CSS color group] -******* Cornsilk [CSS-color 0xFFF8DC] -******* BlanchedAlmond [CSS-color 0xFFEBCD] -******* Bisque [CSS-color 0xFFE4C4] -******* NavajoWhite [CSS-color 0xFFDEAD] -******* Wheat [CSS-color 0xF5DEB3] -******* BurlyWood [CSS-color 0xDEB887] -******* Tan [CSS-color 0xD2B48C] -******* RosyBrown [CSS-color 0xBC8F8F] -******* SandyBrown [CSS-color 0xF4A460] -******* GoldenRod [CSS-color 0xDAA520] -******* DarkGoldenRod [CSS-color 0xB8860B] -******* Peru [CSS-color 0xCD853F] -******* Chocolate [CSS-color 0xD2691E] -******* Olive [CSS-color 0x808000] -******* SaddleBrown [CSS-color 0x8B4513] -******* Sienna [CSS-color 0xA0522D] -******* Brown [CSS-color 0xA52A2A] -******* Maroon [CSS-color 0x800000] -****** Cyan-color [CSS color group] -******* Aqua [CSS-color 0x00FFFF] -******* Cyan [CSS-color 0x00FFFF] -******* LightCyan [CSS-color 0xE0FFFF] -******* PaleTurquoise [CSS-color 0xAFEEEE] -******* Aquamarine [CSS-color 0x7FFFD4] -******* Turquoise [CSS-color 0x40E0D0] -******* MediumTurquoise [CSS-color 0x48D1CC] -******* DarkTurquoise [CSS-color 0x00CED1] -****** Green-color [CSS color group] -******* GreenYellow [CSS-color 0xADFF2F] -******* Chartreuse [CSS-color 0x7FFF00] -******* LawnGreen [CSS-color 0x7CFC00] -******* Lime [CSS-color 0x00FF00] -******* LimeGreen [CSS-color 0x32CD32] -******* PaleGreen [CSS-color 0x98FB98] -******* LightGreen [CSS-color 0x90EE90] -******* MediumSpringGreen [CSS-color 0x00FA9A] -******* SpringGreen [CSS-color 0x00FF7F] -******* MediumSeaGreen [CSS-color 0x3CB371] -******* SeaGreen [CSS-color 0x2E8B57] -******* ForestGreen [CSS-color 0x228B22] -******* Green [CSS-color 0x008000] -******* DarkGreen [CSS-color 0x006400] -******* YellowGreen [CSS-color 0x9ACD32] -******* OliveDrab [CSS-color 0x6B8E23] -******* DarkOliveGreen [CSS-color 0x556B2F] -******* MediumAquaMarine [CSS-color 0x66CDAA] -******* DarkSeaGreen [CSS-color 0x8FBC8F] -******* LightSeaGreen [CSS-color 0x20B2AA] -******* DarkCyan [CSS-color 0x008B8B] -******* Teal [CSS-color 0x008080] -****** Gray-color [CSS color group] -******* Gainsboro [CSS-color 0xDCDCDC] -******* LightGray [CSS-color 0xD3D3D3] -******* Silver [CSS-color 0xC0C0C0] -******* DarkGray [CSS-color 0xA9A9A9] -******* DimGray [CSS-color 0x696969] -******* Gray [CSS-color 0x808080] -******* LightSlateGray [CSS-color 0x778899] -******* SlateGray [CSS-color 0x708090] -******* DarkSlateGray [CSS-color 0x2F4F4F] -******* Black [CSS-color 0x000000] -****** Orange-color [CSS color group] -******* Orange [CSS-color 0xFFA500] -******* DarkOrange [CSS-color 0xFF8C00] -******* Coral [CSS-color 0xFF7F50] -******* Tomato [CSS-color 0xFF6347] -******* OrangeRed [CSS-color 0xFF4500] -****** Pink-color [CSS color group] -******* Pink [CSS-color 0xFFC0CB] -******* LightPink [CSS-color 0xFFB6C1] -******* HotPink [CSS-color 0xFF69B4] -******* DeepPink [CSS-color 0xFF1493] -******* PaleVioletRed [CSS-color 0xDB7093] -******* MediumVioletRed [CSS-color 0xC71585] -****** Purple-color [CSS color group] -******* Lavender [CSS-color 0xE6E6FA] -******* Thistle [CSS-color 0xD8BFD8] -******* Plum [CSS-color 0xDDA0DD] -******* Orchid [CSS-color 0xDA70D6] -******* Violet [CSS-color 0xEE82EE] -******* Fuchsia [CSS-color 0xFF00FF] -******* Magenta [CSS-color 0xFF00FF] -******* MediumOrchid [CSS-color 0xBA55D3] -******* DarkOrchid [CSS-color 0x9932CC] -******* DarkViolet [CSS-color 0x9400D3] -******* BlueViolet [CSS-color 0x8A2BE2] -******* DarkMagenta [CSS-color 0x8B008B] -******* Purple [CSS-color 0x800080] -******* MediumPurple [CSS-color 0x9370DB] -******* MediumSlateBlue [CSS-color 0x7B68EE] -******* SlateBlue [CSS-color 0x6A5ACD] -******* DarkSlateBlue [CSS-color 0x483D8B] -******* RebeccaPurple [CSS-color 0x663399] -******* Indigo [CSS-color 0x4B0082] -****** Red-color [CSS color group] -******* LightSalmon [CSS-color 0xFFA07A] -******* Salmon [CSS-color 0xFA8072] -******* DarkSalmon [CSS-color 0xE9967A] -******* LightCoral [CSS-color 0xF08080] -******* IndianRed [CSS-color 0xCD5C5C] -******* Crimson [CSS-color 0xDC143C] -******* Red [CSS-color 0xFF0000] -******* FireBrick [CSS-color 0xB22222] -******* DarkRed [CSS-color 0x8B0000] -****** Yellow-color [CSS color group] -******* Gold [CSS-color 0xFFD700] -******* Yellow [CSS-color 0xFFFF00] -******* LightYellow [CSS-color 0xFFFFE0] -******* LemonChiffon [CSS-color 0xFFFACD] -******* LightGoldenRodYellow [CSS-color 0xFAFAD2] -******* PapayaWhip [CSS-color 0xFFEFD5] -******* Moccasin [CSS-color 0xFFE4B5] -******* PeachPuff [CSS-color 0xFFDAB9] -******* PaleGoldenRod [CSS-color 0xEEE8AA] -******* Khaki [CSS-color 0xF0E68C] -******* DarkKhaki [CSS-color 0xBDB76B] -****** White-color [CSS color group] -******* White [CSS-color 0xFFFFFF] -******* Snow [CSS-color 0xFFFAFA] -******* HoneyDew [CSS-color 0xF0FFF0] -******* MintCream [CSS-color 0xF5FFFA] -******* Azure [CSS-color 0xF0FFFF] -******* AliceBlue [CSS-color 0xF0F8FF] -******* GhostWhite [CSS-color 0xF8F8FF] -******* WhiteSmoke [CSS-color 0xF5F5F5] -******* SeaShell [CSS-color 0xFFF5EE] -******* Beige [CSS-color 0xF5F5DC] -******* OldLace [CSS-color 0xFDF5E6] -******* FloralWhite [CSS-color 0xFFFAF0] -******* Ivory [CSS-color 0xFFFFF0] -******* AntiqueWhite [CSS-color 0xFAEBD7] -******* Linen [CSS-color 0xFAF0E6] -******* LavenderBlush [CSS-color 0xFFF0F5] -******* MistyRose [CSS-color 0xFFE4E1] +***** CSS-color [One of 140 colors supported by all browsers. For more details such as the color RGB or HEX values, check: https://www.w3schools.com/colors/colors_groups.asp.] +****** Blue-color [CSS color group.] +******* CadetBlue [CSS-color 0x5F9EA0.] +******* SteelBlue [CSS-color 0x4682B4.] +******* LightSteelBlue [CSS-color 0xB0C4DE.] +******* LightBlue [CSS-color 0xADD8E6.] +******* PowderBlue [CSS-color 0xB0E0E6.] +******* LightSkyBlue [CSS-color 0x87CEFA.] +******* SkyBlue [CSS-color 0x87CEEB.] +******* CornflowerBlue [CSS-color 0x6495ED.] +******* DeepSkyBlue [CSS-color 0x00BFFF.] +******* DodgerBlue [CSS-color 0x1E90FF.] +******* RoyalBlue [CSS-color 0x4169E1.] +******* Blue [CSS-color 0x0000FF.] +******* MediumBlue [CSS-color 0x0000CD.] +******* DarkBlue [CSS-color 0x00008B.] +******* Navy [CSS-color 0x000080.] +******* MidnightBlue [CSS-color 0x191970.] +****** Brown-color [CSS color group.] +******* Cornsilk [CSS-color 0xFFF8DC.] +******* BlanchedAlmond [CSS-color 0xFFEBCD.] +******* Bisque [CSS-color 0xFFE4C4.] +******* NavajoWhite [CSS-color 0xFFDEAD.] +******* Wheat [CSS-color 0xF5DEB3.] +******* BurlyWood [CSS-color 0xDEB887.] +******* Tan [CSS-color 0xD2B48C.] +******* RosyBrown [CSS-color 0xBC8F8F.] +******* SandyBrown [CSS-color 0xF4A460.] +******* GoldenRod [CSS-color 0xDAA520.] +******* DarkGoldenRod [CSS-color 0xB8860B.] +******* Peru [CSS-color 0xCD853F.] +******* Chocolate [CSS-color 0xD2691E.] +******* Olive [CSS-color 0x808000.] +******* SaddleBrown [CSS-color 0x8B4513.] +******* Sienna [CSS-color 0xA0522D.] +******* Brown [CSS-color 0xA52A2A.] +******* Maroon [CSS-color 0x800000.] +****** Cyan-color [CSS color group.] +******* Aqua [CSS-color 0x00FFFF.] +******* Cyan [CSS-color 0x00FFFF.] +******* LightCyan [CSS-color 0xE0FFFF.] +******* PaleTurquoise [CSS-color 0xAFEEEE.] +******* Aquamarine [CSS-color 0x7FFFD4.] +******* Turquoise [CSS-color 0x40E0D0.] +******* MediumTurquoise [CSS-color 0x48D1CC.] +******* DarkTurquoise [CSS-color 0x00CED1.] +****** Green-color [CSS color group.] +******* GreenYellow [CSS-color 0xADFF2F.] +******* Chartreuse [CSS-color 0x7FFF00.] +******* LawnGreen [CSS-color 0x7CFC00.] +******* Lime [CSS-color 0x00FF00.] +******* LimeGreen [CSS-color 0x32CD32.] +******* PaleGreen [CSS-color 0x98FB98.] +******* LightGreen [CSS-color 0x90EE90.] +******* MediumSpringGreen [CSS-color 0x00FA9A.] +******* SpringGreen [CSS-color 0x00FF7F.] +******* MediumSeaGreen [CSS-color 0x3CB371.] +******* SeaGreen [CSS-color 0x2E8B57.] +******* ForestGreen [CSS-color 0x228B22.] +******* Green [CSS-color 0x008000.] +******* DarkGreen [CSS-color 0x006400.] +******* YellowGreen [CSS-color 0x9ACD32.] +******* OliveDrab [CSS-color 0x6B8E23.] +******* DarkOliveGreen [CSS-color 0x556B2F.] +******* MediumAquaMarine [CSS-color 0x66CDAA.] +******* DarkSeaGreen [CSS-color 0x8FBC8F.] +******* LightSeaGreen [CSS-color 0x20B2AA.] +******* DarkCyan [CSS-color 0x008B8B.] +******* Teal [CSS-color 0x008080.] +****** Gray-color [CSS color group.] +******* Gainsboro [CSS-color 0xDCDCDC.] +******* LightGray [CSS-color 0xD3D3D3.] +******* Silver [CSS-color 0xC0C0C0.] +******* DarkGray [CSS-color 0xA9A9A9.] +******* DimGray [CSS-color 0x696969.] +******* Gray [CSS-color 0x808080.] +******* LightSlateGray [CSS-color 0x778899.] +******* SlateGray [CSS-color 0x708090.] +******* DarkSlateGray [CSS-color 0x2F4F4F.] +******* Black [CSS-color 0x000000.] +****** Orange-color [CSS color group.] +******* Orange [CSS-color 0xFFA500.] +******* DarkOrange [CSS-color 0xFF8C00.] +******* Coral [CSS-color 0xFF7F50.] +******* Tomato [CSS-color 0xFF6347.] +******* OrangeRed [CSS-color 0xFF4500.] +****** Pink-color [CSS color group.] +******* Pink [CSS-color 0xFFC0CB.] +******* LightPink [CSS-color 0xFFB6C1.] +******* HotPink [CSS-color 0xFF69B4.] +******* DeepPink [CSS-color 0xFF1493.] +******* PaleVioletRed [CSS-color 0xDB7093.] +******* MediumVioletRed [CSS-color 0xC71585.] +****** Purple-color [CSS color group.] +******* Lavender [CSS-color 0xE6E6FA.] +******* Thistle [CSS-color 0xD8BFD8.] +******* Plum [CSS-color 0xDDA0DD.] +******* Orchid [CSS-color 0xDA70D6.] +******* Violet [CSS-color 0xEE82EE.] +******* Fuchsia [CSS-color 0xFF00FF.] +******* Magenta [CSS-color 0xFF00FF.] +******* MediumOrchid [CSS-color 0xBA55D3.] +******* DarkOrchid [CSS-color 0x9932CC.] +******* DarkViolet [CSS-color 0x9400D3.] +******* BlueViolet [CSS-color 0x8A2BE2.] +******* DarkMagenta [CSS-color 0x8B008B.] +******* Purple [CSS-color 0x800080.] +******* MediumPurple [CSS-color 0x9370DB.] +******* MediumSlateBlue [CSS-color 0x7B68EE.] +******* SlateBlue [CSS-color 0x6A5ACD.] +******* DarkSlateBlue [CSS-color 0x483D8B.] +******* RebeccaPurple [CSS-color 0x663399.] +******* Indigo [CSS-color 0x4B0082.] +****** Red-color [CSS color group.] +******* LightSalmon [CSS-color 0xFFA07A.] +******* Salmon [CSS-color 0xFA8072.] +******* DarkSalmon [CSS-color 0xE9967A.] +******* LightCoral [CSS-color 0xF08080.] +******* IndianRed [CSS-color 0xCD5C5C.] +******* Crimson [CSS-color 0xDC143C.] +******* Red [CSS-color 0xFF0000.] +******* FireBrick [CSS-color 0xB22222.] +******* DarkRed [CSS-color 0x8B0000.] +****** Yellow-color [CSS color group.] +******* Gold [CSS-color 0xFFD700.] +******* Yellow [CSS-color 0xFFFF00.] +******* LightYellow [CSS-color 0xFFFFE0.] +******* LemonChiffon [CSS-color 0xFFFACD.] +******* LightGoldenRodYellow [CSS-color 0xFAFAD2.] +******* PapayaWhip [CSS-color 0xFFEFD5.] +******* Moccasin [CSS-color 0xFFE4B5.] +******* PeachPuff [CSS-color 0xFFDAB9.] +******* PaleGoldenRod [CSS-color 0xEEE8AA.] +******* Khaki [CSS-color 0xF0E68C.] +******* DarkKhaki [CSS-color 0xBDB76B.] +****** White-color [CSS color group.] +******* White [CSS-color 0xFFFFFF.] +******* Snow [CSS-color 0xFFFAFA.] +******* HoneyDew [CSS-color 0xF0FFF0.] +******* MintCream [CSS-color 0xF5FFFA.] +******* Azure [CSS-color 0xF0FFFF.] +******* AliceBlue [CSS-color 0xF0F8FF.] +******* GhostWhite [CSS-color 0xF8F8FF.] +******* WhiteSmoke [CSS-color 0xF5F5F5.] +******* SeaShell [CSS-color 0xFFF5EE.] +******* Beige [CSS-color 0xF5F5DC.] +******* OldLace [CSS-color 0xFDF5E6.] +******* FloralWhite [CSS-color 0xFFFAF0.] +******* Ivory [CSS-color 0xFFFFF0.] +******* AntiqueWhite [CSS-color 0xFAEBD7.] +******* Linen [CSS-color 0xFAF0E6.] +******* LavenderBlush [CSS-color 0xFFF0F5.] +******* MistyRose [CSS-color 0xFFE4E1.] ***** Color-shade [A slight degree of difference between colors, especially with regard to how light or dark it is or as distinguished from one nearly like it.] ****** Dark-shade [A color tone not reflecting much light.] ****** Light-shade [A color tone reflecting more light.] ***** Grayscale [Using a color map composed of shades of gray, varying from black at the weakest intensity to white at the strongest.] -****** # {takesValue, valueClass=numericClass} [White intensity between 0 and 1] +****** # {takesValue, valueClass=numericClass} [White intensity between 0 and 1.] ***** HSV-color [A color representation that models how colors appear under light.] ****** Hue [Attribute of a visual sensation according to which an area appears to be similar to one of the perceived colors.] -******* # {takesValue, valueClass=numericClass} [Angular value between 0 and 360] +******* # {takesValue, valueClass=numericClass} [Angular value between 0 and 360.] ****** Saturation [Colorfulness of a stimulus relative to its own brightness.] -******* # {takesValue, valueClass=numericClass} [B value of RGB between 0 and 1] -****** HSV-value [AAttribute of a visual sensation according to which an area appears to emit more or less light.] +******* # {takesValue, valueClass=numericClass} [B value of RGB between 0 and 1.] +****** HSV-value [An attribute of a visual sensation according to which an area appears to emit more or less light.] ******* # {takesValue, valueClass=numericClass} ***** RGB-color [A color from the RGB schema.] ****** RGB-red [The red component.] -******* # {takesValue, valueClass=numericClass} [R value of RGB between 0 and 1] +******* # {takesValue, valueClass=numericClass} [R value of RGB between 0 and 1.] ****** RGB-blue [The blue component.] -******* # {takesValue, valueClass=numericClass} [B value of RGB between 0 and 1] +******* # {takesValue, valueClass=numericClass} [B value of RGB between 0 and 1.] ****** RGB-green [The green component.] -******* # {takesValue, valueClass=numericClass} [G value of RGB between 0 and 1] +******* # {takesValue, valueClass=numericClass} [G value of RGB between 0 and 1.] **** Luminance [A quality that exists by virtue of the luminous intensity per unit area projected in a given direction.] **** Opacity [A measure of impenetrability to light.] ** Sensory-presentation [The entity has a sensory manifestation.] @@ -1010,7 +1028,7 @@ This schema is the first official release that includes an xsd and requires unit *** Behavioral-evidence [An indication or conclusion based on the behavior of an agent.] ** Task-event-role [The purpose of an event with respect to the task.] *** Experimental-stimulus [Part of something designed to elicit a response in the experiment.] -*** Incidental [Usually associated with a sensory event intended to give instructions to the participant about the task or behavior.] +*** Incidental [A sensory or other type of event that is unrelated to the task or experiment.] *** Instructional [Usually associated with a sensory event intended to give instructions to the participant about the task or behavior.] *** Mishap [Unplanned disruption such as an equipment or experiment control abnormality or experimenter error.] *** Participant-response [Something related to a participant actions in performing the task.] @@ -1020,6 +1038,7 @@ This schema is the first official release that includes an xsd and requires unit *** Appropriate-action {relatedTag=Inappropriate-action}[An action suitable or proper in the circumstances.] *** Correct-action {relatedTag=Incorrect-action, relatedTag=Indeterminate-action}[An action that was a correct response in the context of the task.] *** Correction [An action offering an improvement to replace a mistake or error.] +*** Done-indication {relatedTag=Ready-indication}[An action that indicates that the participant has completed this step in the task.] *** Incorrect-action {relatedTag=Correct-action, relatedTag=Indeterminate-action}[An action considered wrong or incorrect in the context of the task.] *** Imagined-action [Form a mental image or concept of something. This is used to identity something that only happened in the imagination of the participant as in imagined movements in motor imagery paradigms.] *** Inappropriate-action {relatedTag=Appropriate-action}[An action not in keeping with what is correct or proper for the task.] @@ -1027,6 +1046,7 @@ This schema is the first official release that includes an xsd and requires unit *** Omitted-action [An expected response was skipped.] *** Miss {relatedTag=Near-miss}[An action considered to be a failure in the context of the task. For example, if the agent is supposed to try to hit a target and misses.] *** Near-miss {relatedTag=Miss}[An action barely satisfied the requirements of the task. In a driving experiment for example this could pertain to a narrowly avoided collision or other accident.] +*** Ready-indication {relatedTag=Done-indication}[An action that indicates that the participant is ready to perform the next step in the task.] ** Task-relationship [Specifying organizational importance of sub-tasks.] *** Background-subtask [A part of the task which should be performed in the background as for example inhibiting blinks due to instruction while performing the primary task.] *** Primary-subtask [A part of the task which should be the primary focus of the participant.] @@ -1056,164 +1076,183 @@ This schema is the first official release that includes an xsd and requires unit *** Unexpected {relatedTag=Expected}[Something that is not anticipated.] *** Unplanned {relatedTag=Planned}[Something that has not been planned as part of the task.] -'''Relation''' [Concerns the way in which two or more people or things are connected.] -* Comparative-relation [Something considered in comparison to something else.] -** Approximately-equal-to [(A (Approximately-equal-to B)) indicates that A and B have almost the same value. Here A and B could refer to sizes, orders, positions or other quantities.] -** Less-than [(A (Less-than B)) indicates that A is smaller than B. Here A and B could refer to sizes, orders, positions or other quantities.] -** Less-than-or-equal-to [(A (Less-than-or-equal-to B)) indicates that the relative size or order of A is smaller than or equal to B.] -** Greater-than [(A (Greater-than B)) indicates that the relative size or order of A is bigger than that of B.] -** Greater-than-or-equal-to [(A (Greater-than-or-equal-to B)) indicates that the relative size or order of A is bigger than or the same as that of B.] -** Equal-to [(A (Equal-to B)) indicates that the size or order of A is the same as that of B.] -** Not-equal-to [(A (Not-equal-to B)) indicates that the size or order of A is not the same as that of B.] -* Connective-relation [Indicates two items are related in some way.] -** Belongs-to [(A (Belongs-to B)) indicates that A is a member of B.] -** Connected-to [(A (Connected-to) B) indicates that A is related to B in some respect, usually through a direct link.] -** Contained-in [(A (Contained-in B)) indicates that A is completely inside of B.] -** Described-by [(A (Described-by B)) indicates that B provides information about A.] -** From-to [(A (From-to B)) indicates a directional relation from A to B. A is considered the source.] -** Group-of [(A (Group-of B)) indicates A is a group of items of type B.] -** Implied-by [(A (Implied-by B)) indicates B is suggested by A.] -** Interacts-with [(A (Interacts-with B)) indicates A and B interact, possibly reciprocally.] -** Member-of [(A (Member-of B)) indicates A is a member of group B.] -** Part-of [(A (Part-of B)) indicates A is a part of the whole B.] -** Performed-by [(A (Performed-by B)) Indicates that ction or procedure A was carried out by agent B.] -** Related-to [(A (Relative-to B)) indicates A is a part of the whole B.] -* Directional-relation [A relationship indicating direction of change.] -** Away-from [Go away from a place or object.] -** Towards [Moving in the direction of. A relation binding a relational quality or disposition to the relevant type of entity] -* Spatial-relation [Indicating information about position.] -** Above [(A (Adjacent-to B)) means A is in a place or position that is higher than B.] -** Across-from [(A (Across-from B)) means A is on the opposite side of something from B.] -** Adjacent-to [(A (Adjacent-to B)) indicates that A is next to B in time or space.] -** Ahead-of [(A (Ahead-of B)) indicates that A is further forward in time or space in B.] -** Around [(A (Around B)) means A is in or near the present place or situation of B.] -** Behind [(A (Behind B)) means A is at or to the far side of B, typically so as to be hidden by it.] -** Below [(A (Below B)) means A is in a place or position that is lower than the position of B.] -** Between [(A (Between, (B, C))) means A is in the space or interval separating B and C.] -** Bilateral-to [(A (Bilateral B)) means A is on both sides of B or affects both sides of B.] -** Bottom-edge-of {relatedTag=Left-edge-of,relatedTag=Right-edge-of,relatedTag=Top-edge-of}[(A (Bottom-edge-of B)) means A is on the bottom most part or or near the boundary of B.] -** Boundary-of [(A (Boundary-of B)) means A is on or part of the edge or boundary of B.] -** Center-of [(A (Center-of B)) means A is at a point or or in an area that is approximately central within B.] -** Close-to [(A (Close-to B)) means A is at a small distance from or is located near in space to B.] -** Far-from [(A (Far-from B)) means A is at a large distance from or is not located near in space to B.] -** In-front-of [(A (In-front-of B)) means A is in a position just ahead or at the front part of B, potentially partially blocking B from view.] -** Left-edge-of {relatedTag=Bottom-edge-of,relatedTag=Right-edge-of,relatedTag=Top-edge-of}[(A (Left-edge-of B)) means A is located on the left side of B on or near the boundary of B.] -** Left-side-of {relatedTag=Right-side-of}[(A (Left-side-of B)) means A is located on the left side of B usually as part of B.] -** Lower-left-of {relatedTag=Lower-right-of,relatedTag=Upper-left-of,relatedTag=Upper-right-of}[(A (Lower-left-of B)) means A is situated on the lower left part of B. This relation is often used to specify qualitative information about screen position.] -** Lower-right-of {relatedTag=Upper-left-of,relatedTag=Upper-left-of,relatedTag=Lower-right-of}[(A (Lower-right-of B)) means A is situated on the lower right part of B. This relation is often used to specify qualitative information about screen position.] -** Outside-of [(A (Outside-of B)) means A is located in the space around but not including B.] -** Over [(A (over B)) means A above is above B so as to cover or protect or A extends over the a general area as from a from a vantage point.] -** Right-edge-of {relatedTag=Bottom-edge-of,relatedTag=Left-edge-of,relatedTag=Top-edge-of}[(A (Right-edge-of B)) means A is located on the right side of B on or near the boundary of B.] -** Right-side-of {relatedTag=Left-side-of}[(A (Right-side-of B)) means A is located on the right side of B usually as part of B.] -** To-left-of [(A (To-left-of B)) means A is located on or directed toward the side to the west of B when B is facing north. This term is used when A is not part of B.] -** To-right-of [(A (To-right-of B)) means A is located on or directed toward the side to the east of B when B is facing north. This term is used when A is not part of B.] -** Top-edge-of {relatedTag=Left-edge-of,relatedTag=Right-edge-of,relatedTag=Bottom-edge-of}[(A (Top-edge-of B)) means A is on the uppermost part or or near the boundary of B.] -** Top-of [(A (Top-of B)) means A is on the uppermost part, side, or surface of B.] -** Upper-left-of {relatedTag=Lower-left-of,relatedTag=Lower-right-of,relatedTag=Upper-right-of}[(A (Upper-left-of B)) means A is situated on the upper left part of B. This relation is often used to specify qualitative information about screen position.] -** Upper-right-of {relatedTag=Lower-left-of,relatedTag=Upper-left-of,relatedTag=Lower-right-of}[(A (Upper-right-of B)) means A is situated on the upper right part of B. This relation is often used to specify qualitative information about screen position.] -** Underneath [(A (Underneath B)) means A is situated directly below and may be concealed by B.] -** Within [(A (Within B)) means A is on the inside of or contained in B.] -* Temporal-relation [Any relationship which includes a temporal or time-based component.] -** After [(A After B) means A happens at a time subsequent to a reference time related to B.] -** Asynchronous-with [(A Asynchronous-with B) means A happens at times not occurring at the same time or having the same period or phase as B.] -** Before [(A Before B) means A happens at a time earlier in time or order than B.] -** During [(A During B) means A happens at some point in a given period of time in which B is ongoing.] -** Synchronous-with [(A Synchronous-with B) means A happens at occurs at the same time or rate as B.] -** Waiting-for [(A Waiting-for B) means A pauses for something to happen in B.] +'''Relation''' {extensionAllowed}[Concerns the way in which two or more people or things are connected.] +* Comparative-relation [Something considered in comparison to something else. The first entity is the focus.] +** Approximately-equal-to [(A, (Approximately-equal-to, B)) indicates that A and B have almost the same value. Here A and B could refer to sizes, orders, positions or other quantities.] +** Less-than [(A, (Less-than, B)) indicates that A is smaller than B. Here A and B could refer to sizes, orders, positions or other quantities.] +** Less-than-or-equal-to [(A, (Less-than-or-equal-to, B)) indicates that the relative size or order of A is smaller than or equal to B.] +** Greater-than [(A, (Greater-than, B)) indicates that the relative size or order of A is bigger than that of B.] +** Greater-than-or-equal-to [(A, (Greater-than-or-equal-to, B)) indicates that the relative size or order of A is bigger than or the same as that of B.] +** Equal-to [(A, (Equal-to, B)) indicates that the size or order of A is the same as that of B.] +** Not-equal-to [(A, (Not-equal-to, B)) indicates that the size or order of A is not the same as that of B.] +* Connective-relation [Indicates two entities are related in some way. The first entity is the focus.] +** Belongs-to [(A, (Belongs-to, B)) indicates that A is a member of B.] +** Connected-to [(A, (Connected-to, B)) indicates that A is related to B in some respect, usually through a direct link.] +** Contained-in [(A, (Contained-in, B)) indicates that A is completely inside of B.] +** Described-by [(A, (Described-by, B)) indicates that B provides information about A.] +** From-to [(A, (From-to, B)) indicates a directional relation from A to B. A is considered the source.] +** Group-of [(A, (Group-of, B)) indicates A is a group of items of type B.] +** Implied-by [(A, (Implied-by, B)) indicates B is suggested by A.] +** Includes [(A, (Includes, B)) indicates that A has B as a member or part.] +** Interacts-with [(A, (Interacts-with, B)) indicates A and B interact, possibly reciprocally.] +** Member-of [(A, (Member-of, B)) indicates A is a member of group B.] +** Part-of [(A, (Part-of, B)) indicates A is a part of the whole B.] +** Performed-by [(A, (Performed-by, B)) indicates that the action or procedure A was carried out by agent B.] +** Performed-using [(A, (Performed-using, B)) indicates that the action or procedure A was accomplished using B.] +** Related-to [(A, (Related-to, B)) indicates A has some relationship to B.] +** Unrelated-to [(A, (Unrelated-to, B)) indicates that A is not related to B. For example, A is not related to Task.] +* Directional-relation [A relationship indicating direction of change of one entity relative to another. The first entity is the focus.] +** Away-from [(A, (Away-from, B)) indicates that A is going or has moved away from B. The meaning depends on A and B.] +** Towards [(A, (Towards, B)) indicates that A is going to or has moved to B. The meaning depends on A and B.] +* Logical-relation [Indicating a logical relationship between entities. The first entity is usually the focus.] +** And [(A, (And, B)) means A and B are both in effect.] +** Or [(A, (Or, B)) means at least one of A and B are in effect.] +* Spatial-relation [Indicating a relationship about position between entities.] +** Above [(A, (Above, B)) means A is in a place or position that is higher than B.] +** Across-from [(A, (Across-from, B)) means A is on the opposite side of something from B.] +** Adjacent-to [(A, (Adjacent-to, B)) indicates that A is next to B in time or space.] +** Ahead-of [(A, (Ahead-of, B)) indicates that A is further forward in time or space in B.] +** Around [(A, (Around, B)) means A is in or near the present place or situation of B.] +** Behind [(A, (Behind, B)) means A is at or to the far side of B, typically so as to be hidden by it.] +** Below [(A, (Below, B)) means A is in a place or position that is lower than the position of B.] +** Between [(A, (Between, (B, C))) means A is in the space or interval separating B and C.] +** Bilateral-to [(A, (Bilateral, B)) means A is on both sides of B or affects both sides of B.] +** Bottom-edge-of {relatedTag=Left-edge-of,relatedTag=Right-edge-of,relatedTag=Top-edge-of}[(A, (Bottom-edge-of, B)) means A is on the bottom most part or or near the boundary of B.] +** Boundary-of [(A, (Boundary-of, B)) means A is on or part of the edge or boundary of B.] +** Center-of [(A, (Center-of, B)) means A is at a point or or in an area that is approximately central within B.] +** Close-to [(A, (Close-to, B)) means A is at a small distance from or is located near in space to B.] +** Far-from [(A, (Far-from, B)) means A is at a large distance from or is not located near in space to B.] +** In-front-of [(A, (In-front-of, B)) means A is in a position just ahead or at the front part of B, potentially partially blocking B from view.] +** Left-edge-of {relatedTag=Bottom-edge-of,relatedTag=Right-edge-of,relatedTag=Top-edge-of}[(A, (Left-edge-of, B)) means A is located on the left side of B on or near the boundary of B.] +** Left-side-of {relatedTag=Right-side-of}[(A, (Left-side-of, B)) means A is located on the left side of B usually as part of B.] +** Lower-center-of {relatedTag=Center-of,relatedTag=Lower-left-of,relatedTag=Lower-right-of,relatedTag=Upper-center-of,relatedTag=Upper-right-of}[(A, (Lower-center-of, B)) means A is situated on the lower center part of B (due south). This relation is often used to specify qualitative information about screen position.] +** Lower-left-of {relatedTag=Center-of,relatedTag=Lower-center-of,relatedTag=Lower-right-of,relatedTag=Upper-center-of,relatedTag=Upper-left-of,relatedTag=Upper-right-of}[(A, (Lower-left-of, B)) means A is situated on the lower left part of B. This relation is often used to specify qualitative information about screen position.] +** Lower-right-of {relatedTag=Center-of,relatedTag=Lower-center-of,relatedTag=Lower-left-of,relatedTag=Upper-left-of,relatedTag=Upper-center-of,relatedTag=Upper-left-of,relatedTag=Lower-right-of}[(A, (Lower-right-of, B)) means A is situated on the lower right part of B. This relation is often used to specify qualitative information about screen position.] +** Outside-of [(A, (Outside-of, B)) means A is located in the space around but not including B.] +** Over [(A, (Over, B)) means A above is above B so as to cover or protect or A extends over the a general area as from a from a vantage point.] +** Right-edge-of {relatedTag=Bottom-edge-of,relatedTag=Left-edge-of,relatedTag=Top-edge-of}[(A, (Right-edge-of, B)) means A is located on the right side of B on or near the boundary of B.] +** Right-side-of {relatedTag=Left-side-of}[(A, (Right-side-of, B)) means A is located on the right side of B usually as part of B.] +** To-left-of [(A, (To-left-of, B)) means A is located on or directed toward the side to the west of B when B is facing north. This term is used when A is not part of B.] +** To-right-of [(A, (To-right-of, B)) means A is located on or directed toward the side to the east of B when B is facing north. This term is used when A is not part of B.] +** Top-edge-of {relatedTag=Left-edge-of,relatedTag=Right-edge-of,relatedTag=Bottom-edge-of}[(A, (Top-edge-of, B)) means A is on the uppermost part or or near the boundary of B.] +** Top-of [(A, (Top-of, B)) means A is on the uppermost part, side, or surface of B.] +** Upper-center-of {relatedTag=Center-of,relatedTag=Lower-center-of,relatedTag=Lower-left-of,relatedTag=Lower-right-of,relatedTag=Upper-center-of,relatedTag=Upper-right-of}[(A, (Upper-center-of, B)) means A is situated on the upper center part of B (due north). This relation is often used to specify qualitative information about screen position.] +** Upper-left-of {relatedTag=Center-of,relatedTag=Lower-center-of,relatedTag=Lower-left-of,relatedTag=Lower-right-of,relatedTag=Upper-center-of,relatedTag=Upper-right-of}[(A, (Upper-left-of, B)) means A is situated on the upper left part of B. This relation is often used to specify qualitative information about screen position.] +** Upper-right-of {relatedTag=Center-of,relatedTag=Lower-center-of,relatedTag=Lower-left-of,relatedTag=Upper-left-of,relatedTag=Upper-center-of,relatedTag=Lower-right-of}[(A, (Upper-right-of, B)) means A is situated on the upper right part of B. This relation is often used to specify qualitative information about screen position.] +** Underneath [(A, (Underneath, B)) means A is situated directly below and may be concealed by B.] +** Within [(A, (Within, B)) means A is on the inside of or contained in B.] +* Temporal-relation [A relationship that includes a temporal or time-based component.] +** After [(A, (After B)) means A happens at a time subsequent to a reference time related to B.] +** Asynchronous-with [(A, (Asynchronous-with, B)) means A happens at times not occurring at the same time or having the same period or phase as B.] +** Before [(A, (Before B)) means A happens at a time earlier in time or order than B.] +** During [(A, (During, B)) means A happens at some point in a given period of time in which B is ongoing.] +** Synchronous-with [(A, (Synchronous-with, B)) means A happens at occurs at the same time or rate as B.] +** Waiting-for [(A, (Waiting-for, B)) means A pauses for something to happen in B.] !# end schema '''Unit classes''' [Unit classes and the units for the nodes.] * accelerationUnits {defaultUnits=m-per-s^2} -** m-per-s^2 {SIUnit, unitSymbol} +** m-per-s^2 {SIUnit, unitSymbol, conversionFactor=1.0} * angleUnits {defaultUnits=radian} -** radian {SIUnit} -** rad {SIUnit, unitSymbol} -** degree +** radian {SIUnit, conversionFactor=1.0} +** rad {SIUnit, unitSymbol, conversionFactor=1.0} +** degree {conversionFactor=0.0174533} * areaUnits {defaultUnits=m^2} -** m^2 {SIUnit, unitSymbol} +** m^2 {SIUnit, unitSymbol, conversionFactor=1.0} * currencyUnits {defaultUnits=$}[Units indicating the worth of something.] -** dollar -** $ {unitPrefix, unitSymbol} -** point +** dollar {conversionFactor=1.0} +** $ {unitPrefix, unitSymbol, conversionFactor=1.0} +** euro +** point +* electricPotentialUnits {defaultUnits=uv} +** v {SIUnit, unitSymbol, conversionFactor=0.000001} +** Volt {SIUnit, conversionFactor=0.000001} * frequencyUnits {defaultUnits=Hz} -** hertz {SIUnit} -** Hz {SIUnit, unitSymbol} +** hertz {SIUnit, conversionFactor=1.0} +** Hz {SIUnit, unitSymbol, conversionFactor=1.0} * intensityUnits {defaultUnits=dB} -** dB {unitSymbol}[Intensity expressed as ratio to a threshold. Often used for sound intensity.] +** dB {unitSymbol, conversionFactor=1.0}[Intensity expressed as ratio to a threshold. May be used for sound intensity.] ** candela {SIUnit}[Units used to express light intensity.] ** cd {SIUnit, unitSymbol}[Units used to express light intensity.] * jerkUnits {defaultUnits=m-per-s^3} -** m-per-s^3 {unitSymbol} +** m-per-s^3 {unitSymbol, conversionFactor=1.0} +* magneticFieldUnits {defaultUnits=fT}[Units used to magnetic field intensity.] +** tesla {SIUnit, conversionFactor=10^-15} +** T {SIUnit, unitSymbol, conversionFactor=10^-15} * memorySizeUnits {defaultUnits=B} -** byte {SIUnit} -** B {SIUnit, unitSymbol} +** byte {SIUnit, conversionFactor=1.0} +** B {SIUnit, unitSymbol, conversionFactor=1.0} * physicalLengthUnits {defaultUnits=m} -** foot -** inch -** metre {SIUnit} -** m {SIUnit, unitSymbol} -** mile +** foot {conversionFactor=0.3048} +** inch {conversionFactor=0.0254} +** meter {SIUnit, conversionFactor=1.0} +** metre {SIUnit, conversionFactor=1.0} +** m {SIUnit, unitSymbol, conversionFactor=1.0} +** mile {conversionFactor=1609.34} * speedUnits {defaultUnits=m-per-s} -** m-per-s {SIUnit, unitSymbol} -** mph {unitSymbol} -** kph {unitSymbol} +** m-per-s {SIUnit, unitSymbol, conversionFactor=1.0} +** mph {unitSymbol, conversionFactor=0.44704} +** kph {unitSymbol, conversionFactor=0.277778} +* temperatureUnits {defaultUnits=degree Celsius} +** degree Celsius {SIUnit, conversionFactor=1.0} +** oC {SIUnit, unitSymbol, conversionFactor=1.0} * timeUnits {defaultUnits=s} -** second {SIUnit} -** s {SIUnit, unitSymbol} -** day -** minute -** hour [Should be in 24-hour format.] +** second {SIUnit, conversionFactor=1.0} +** s {SIUnit, unitSymbol, conversionFactor=1.0} +** day {conversionFactor=86400} +** minute {conversionFactor=60} +** hour {conversionFactor=3600}[Should be in 24-hour format.] * volumeUnits {defaultUnits=m^3} -** m^3 {SIUnit, unitSymbol} +** m^3 {SIUnit, unitSymbol, conversionFactor=1.0} * weightUnits {defaultUnits=g} -** g {SIUnit, unitSymbol} -** gram {SIUnit} -** pound -** lb +** g {SIUnit, unitSymbol, conversionFactor=1.0} +** gram {SIUnit, conversionFactor=1.0} +** pound {conversionFactor=453.592} +** lb {conversionFactor=453.592} '''Unit modifiers''' [Unit multiples and submultiples.] -* deca {SIUnitModifier} [SI unit multiple representing 10^1] -* da {SIUnitSymbolModifier} [SI unit multiple representing 10^1] -* hecto {SIUnitModifier} [SI unit multiple representing 10^2] -* h {SIUnitSymbolModifier} [SI unit multiple representing 10^2] -* kilo {SIUnitModifier} [SI unit multiple representing 10^3] -* k {SIUnitSymbolModifier} [SI unit multiple representing 10^3] -* mega {SIUnitModifier} [SI unit multiple representing 10^6] -* M {SIUnitSymbolModifier} [SI unit multiple representing 10^6] -* giga {SIUnitModifier} [SI unit multiple representing 10^9] -* G {SIUnitSymbolModifier} [SI unit multiple representing 10^9] -* tera {SIUnitModifier} [SI unit multiple representing 10^12] -* T {SIUnitSymbolModifier} [SI unit multiple representing 10^12] -* peta {SIUnitModifier} [SI unit multiple representing 10^15] -* P {SIUnitSymbolModifier} [SI unit multiple representing 10^15] -* exa {SIUnitModifier} [SI unit multiple representing 10^18] -* E {SIUnitSymbolModifier} [SI unit multiple representing 10^18] -* zetta {SIUnitModifier} [SI unit multiple representing 10^21] -* Z {SIUnitSymbolModifier} [SI unit multiple representing 10^21] -* yotta {SIUnitModifier} [SI unit multiple representing 10^24] -* Y {SIUnitSymbolModifier} [SI unit multiple representing 10^24] -* deci {SIUnitModifier} [SI unit submultiple representing 10^-1] -* d {SIUnitSymbolModifier} [SI unit submultiple representing 10^-1] -* centi {SIUnitModifier} [SI unit submultiple representing 10^-2] -* c {SIUnitSymbolModifier} [SI unit submultiple representing 10^-2] -* milli {SIUnitModifier} [SI unit submultiple representing 10^-3] -* m {SIUnitSymbolModifier} [SI unit submultiple representing 10^-3] -* micro {SIUnitModifier} [SI unit submultiple representing 10^-6] -* u {SIUnitSymbolModifier} [SI unit submultiple representing 10^-6] -* nano {SIUnitModifier} [SI unit submultiple representing 10^-9] -* n {SIUnitSymbolModifier} [SI unit submultiple representing 10^-9] -* pico {SIUnitModifier} [SI unit submultiple representing 10^-12] -* p {SIUnitSymbolModifier} [SI unit submultiple representing 10^-12] -* femto {SIUnitModifier} [SI unit submultiple representing 10^-15] -* f {SIUnitSymbolModifier} [SI unit submultiple representing 10^-15] -* atto {SIUnitModifier} [SI unit submultiple representing 10^-18] -* a {SIUnitSymbolModifier} [SI unit submultiple representing 10^-18] -* zepto {SIUnitModifier} [SI unit submultiple representing 10^-21] -* z {SIUnitSymbolModifier} [SI unit submultiple representing 10^-21] -* yocto {SIUnitModifier} [SI unit submultiple representing 10^-24] -* y {SIUnitSymbolModifier} [SI unit submultiple representing 10^-24] +* deca {SIUnitModifier, conversionFactor=10.0} [SI unit multiple representing 10^1.] +* da {SIUnitSymbolModifier, conversionFactor=10.0} [SI unit multiple representing 10^1.] +* hecto {SIUnitModifier, conversionFactor=100.0} [SI unit multiple representing 10^2.] +* h {SIUnitSymbolModifier, conversionFactor=100.0} [SI unit multiple representing 10^2.] +* kilo {SIUnitModifier, conversionFactor=1000.0} [SI unit multiple representing 10^3.] +* k {SIUnitSymbolModifier, conversionFactor=1000.0} [SI unit multiple representing 10^3.] +* mega {SIUnitModifier, conversionFactor=10^6} [SI unit multiple representing 10^6.] +* M {SIUnitSymbolModifier, conversionFactor=10^6} [SI unit multiple representing 10^6.] +* giga {SIUnitModifier, conversionFactor=10^9} [SI unit multiple representing 10^9.] +* G {SIUnitSymbolModifier, conversionFactor=10^9} [SI unit multiple representing 10^9.] +* tera {SIUnitModifier, conversionFactor=10^12} [SI unit multiple representing 10^12.] +* T {SIUnitSymbolModifier, conversionFactor=10^12} [SI unit multiple representing 10^12.] +* peta {SIUnitModifier, conversionFactor=10^15} [SI unit multiple representing 10^15.] +* P {SIUnitSymbolModifier, conversionFactor=10^15} [SI unit multiple representing 10^15.] +* exa {SIUnitModifier, conversionFactor=10^18} [SI unit multiple representing 10^18.] +* E {SIUnitSymbolModifier, conversionFactor=10^18} [SI unit multiple representing 10^18.] +* zetta {SIUnitModifier, conversionFactor=10^21} [SI unit multiple representing 10^21.] +* Z {SIUnitSymbolModifier, conversionFactor=10^21} [SI unit multiple representing 10^21.] +* yotta {SIUnitModifier, conversionFactor=10^24} [SI unit multiple representing 10^24.] +* Y {SIUnitSymbolModifier, conversionFactor=10^24} [SI unit multiple representing 10^24.] +* deci {SIUnitModifier, conversionFactor=0.1}[SI unit submultiple representing 10^-1.] +* d {SIUnitSymbolModifier, conversionFactor=0.1} [SI unit submultiple representing 10^-1.] +* centi {SIUnitModifier, conversionFactor=0.01} [SI unit submultiple representing 10^-2.] +* c {SIUnitSymbolModifier, conversionFactor=0.01} [SI unit submultiple representing 10^-2.] +* milli {SIUnitModifier, conversionFactor=0.001} [SI unit submultiple representing 10^-3.] +* m {SIUnitSymbolModifier, conversionFactor=0.001} [SI unit submultiple representing 10^-3.] +* micro {SIUnitModifier, conversionFactor=10^-6} [SI unit submultiple representing 10^-6.] +* u {SIUnitSymbolModifier, conversionFactor=10^-6} [SI unit submultiple representing 10^-6.] +* nano {SIUnitModifier, conversionFactor=10^-9} [SI unit submultiple representing 10^-9.] +* n {SIUnitSymbolModifier, conversionFactor=10^-9} [SI unit submultiple representing 10^-9.] +* pico {SIUnitModifier, conversionFactor=10^-12} [SI unit submultiple representing 10^-12.] +* p {SIUnitSymbolModifier, conversionFactor=10^-12} [SI unit submultiple representing 10^-12.] +* femto {SIUnitModifier, conversionFactor=10^-15} [SI unit submultiple representing 10^-15.] +* f {SIUnitSymbolModifier, conversionFactor=10^-15} [SI unit submultiple representing 10^-15.] +* atto {SIUnitModifier, conversionFactor=10^-18} [SI unit submultiple representing 10^-18.] +* a {SIUnitSymbolModifier, conversionFactor=10^-18} [SI unit submultiple representing 10^-18.] +* zepto {SIUnitModifier, conversionFactor=10^-21} [SI unit submultiple representing 10^-21.] +* z {SIUnitSymbolModifier, conversionFactor=10^-21} [SI unit submultiple representing 10^-21.] +* yocto {SIUnitModifier, conversionFactor=10^-24} [SI unit submultiple representing 10^-24.] +* y {SIUnitSymbolModifier, conversionFactor=10^-24} [SI unit submultiple representing 10^-24.] '''Value classes''' [Specification of the rules for the values provided by users.] @@ -1224,35 +1263,42 @@ This schema is the first official release that includes an xsd and requires unit * textClass {allowedCharacter=letters, allowedCharacter=digits, allowedCharacter=blank, allowedCharacter=+, allowedCharacter=-, allowedCharacter=:, allowedCharacter=;, allowedCharacter=., allowedCharacter=/, allowedCharacter=(, allowedCharacter=), allowedCharacter=?, allowedCharacter=*, allowedCharacter=%, allowedCharacter=$, allowedCharacter=@}[Value class designating values that have the characteristics of text such as in descriptions.] -'''Schema attributes''' [Allowed node, unit class or unit modifier attributes.] +'''Schema attributes''' [Allowed attribute modifiers of other sections of the schema.] * allowedCharacter {valueClassProperty}[A schema attribute of value classes specifying a special character that is allowed in expressing the value of a placeholder. Normally the allowed characters are listed individually. However, the word letters designates the upper and lower case alphabetic characters and the word digits designates the digits 0-9. The word blank designates the blank character.] -* defaultUnits {unitClassProperty}[A schema attribute of unit classes specifying the default units to use if the placeholder has a unit class but the substituted value has no units.] -* extensionAllowed {boolProperty}[A schema attribute indicating that users can add unlimited levels of child nodes under this tag. This tag is propagated to child nodes with the exception of the hashtag placeholders.] -* recommended {boolProperty}[A schema attribute indicating that the event-level HED string should include this tag.] -* relatedTag [A schema attribute suggesting HED tags that are closely related to this tag. This attribute is used by tagging tools.] -* requireChild {boolProperty}[A schema attribute indicating that one of the node elements descendants must be included when using this tag.] -* required {boolProperty}[A schema attribute indicating that every event-level HED string should include this tag.] +* conversionFactor {unitProperty, unitModifierProperty}[The multiplicative factor to multiply these units to convert to default units.] +* deprecatedFrom {elementProperty}[Indicates that this element is deprecated. The value of the attribute is the latest schema version in which the element appeared in undeprecated form.] +* defaultUnits {unitClassProperty}[A schema attribute of unit classes specifying the default units to use if the placeholder has a unit class but the substituted value has no units.] +* extensionAllowed {boolProperty, nodeProperty, isInheritedProperty}[A schema attribute indicating that users can add unlimited levels of child nodes under this tag. This tag is propagated to child nodes with the exception of the hashtag placeholders.] +* inLibrary {elementProperty} [Indicates this schema element came from the named library schema, not the standard schema. This attribute is added by tools when a library schema is merged into its partnered standard schema.] +* recommended {boolProperty, nodeProperty}[A schema attribute indicating that the event-level HED string should include this tag.] +* relatedTag {nodeProperty, isInheritedProperty}[A schema attribute suggesting HED tags that are closely related to this tag. This attribute is used by tagging tools.] +* requireChild {boolProperty, nodeProperty}[A schema attribute indicating that one of the node elements descendants must be included when using this tag.] +* required {boolProperty, nodeProperty}[A schema attribute indicating that every event-level HED string should include this tag.] +* reserved {boolProperty, nodeProperty}[A schema attribute indicating that this tag has special meaning and requires special handling by tools.] +* rooted {nodeProperty}[Indicates a top-level library schema node is identical to a node of the same name in the partnered standard schema. This attribute can only appear in nodes that have the inLibrary schema attribute.] * SIUnit {boolProperty, unitProperty}[A schema attribute indicating that this unit element is an SI unit and can be modified by multiple and submultiple names. Note that some units such as byte are designated as SI units although they are not part of the standard.] * SIUnitModifier {boolProperty, unitModifierProperty}[A schema attribute indicating that this SI unit modifier represents a multiple or submultiple of a base unit rather than a unit symbol.] * SIUnitSymbolModifier {boolProperty, unitModifierProperty}[A schema attribute indicating that this SI unit modifier represents a multiple or submultiple of a unit symbol rather than a base symbol.] -* suggestedTag [A schema attribute that indicates another tag that is often associated with this tag. This attribute is used by tagging tools to provide tagging suggestions.] -* tagGroup {boolProperty}[A schema attribute indicating the tag can only appear inside a tag group.] -* takesValue {boolProperty}[A schema attribute indicating the tag is a hashtag placeholder that is expected to be replaced with a user-defined value.] -* topLevelTagGroup {boolProperty}[A schema attribute indicating that this tag (or its descendants) can only appear in a top-level tag group.] -* unique {boolProperty}[A schema attribute indicating that only one of this tag or its descendants can be used in the event-level HED string.] -* unitClass [A schema attribute specifying which unit class this value tag belongs to.] +* suggestedTag {nodeProperty, isInheritedProperty}[A schema attribute that indicates another tag that is often associated with this tag. This attribute is used by tagging tools to provide tagging suggestions.] +* tagGroup {boolProperty, nodeProperty}[A schema attribute indicating the tag can only appear inside a tag group.] +* takesValue {boolProperty, nodeProperty}[A schema attribute indicating the tag is a hashtag placeholder that is expected to be replaced with a user-defined value.] +* topLevelTagGroup {boolProperty, nodeProperty}[A schema attribute indicating that this tag (or its descendants) can only appear in a top-level tag group. A tag group can have at most one tag with this attribute.] +* unique {boolProperty, nodeProperty}[A schema attribute indicating that only one of this tag or its descendants can be used in the event-level HED string.] +* unitClass {nodeProperty}[A schema attribute specifying which unit class this value tag belongs to.] * unitPrefix {boolProperty, unitProperty}[A schema attribute applied specifically to unit elements to designate that the unit indicator is a prefix (e.g., dollar sign in the currency units).] * unitSymbol {boolProperty, unitProperty}[A schema attribute indicating this tag is an abbreviation or symbol representing a type of unit. Unit symbols represent both the singular and the plural and thus cannot be pluralized.] -* valueClass [A schema attribute specifying which value class this value tag belongs to.] +* valueClass {nodeProperty}[A schema attribute specifying which value class this value tag belongs to.] '''Properties''' [Properties of the schema attributes themselves. These are used for schema handling and verification.] * boolProperty [Indicates that the schema attribute represents something that is either true or false and does not have a value. Attributes without this value are assumed to have string values.] +* elementProperty [Indicates this schema attribute can apply to any type of element(tag term, unit class, etc).] +* isInheritedProperty [Indicates that this attribute is inherited by child nodes. This property only applies to schema attributes for nodes.] +* nodeProperty [Indicates this schema attribute applies to node (tag-term) elements. This was added to allow for an attribute to apply to multiple elements.] * unitClassProperty [Indicates that the schema attribute is meant to be applied to unit classes.] * unitModifierProperty [Indicates that the schema attribute is meant to be applied to unit modifier classes.] * unitProperty [Indicates that the schema attribute is meant to be applied to units within a unit class.] * valueClassProperty [Indicates that the schema attribute is meant to be applied to value classes.] '''Epilogue''' -This is an updated version of the schema format. The properties are now part of the schema. The schema attributes are designed to be checked in software rather than hard-coded. The schema attributes, themselves have properties. - +This schema is released under the Creative Commons Attribution 4.0 International and is a product of the HED Working Group. The DOI for the latest version of the HED standard schema is 10.5281/zenodo.7876037. !# end hed \ No newline at end of file diff --git a/hedcode/data/schema_data/HED8.0.1.xml b/hedcode/data/schema_data/HED8.2.0.xml similarity index 84% rename from hedcode/data/schema_data/HED8.0.1.xml rename to hedcode/data/schema_data/HED8.2.0.xml index 402a32f2..1f55c7ae 100644 --- a/hedcode/data/schema_data/HED8.0.1.xml +++ b/hedcode/data/schema_data/HED8.2.0.xml @@ -1,6 +1,9 @@ - - This schema is the first official release that includes an xsd and requires unit class, unit modifier, value class, schema attribute and property sections. + + The HED standard schema is a hierarchically-organized vocabulary for annotating events and experimental structure. HED annotations consist of comma-separated tags drawn from this vocabulary. This vocabulary can be augmented by terms drawn from specialized library schema. + +Each term in this vocabulary has a human-readable description and may include additional attributes that give additional properties or that specify how tools should treat the tag during analysis. The meaning of these attributes is described in the Additional schema properties section. + @@ -806,6 +809,10 @@ Anatomical-item A biological structure, system, fluid or other substance excluding single molecular entities. + + Body + The biological structure representing an organism. + Body-part Any part of an organism. @@ -927,6 +934,10 @@ Gentalia The external organs of reproduction. + + deprecatedFrom + 8.1.0 + Hip @@ -1093,6 +1104,10 @@ 2D-shape A planar, two-dimensional shape. + + Arrow + A shape with a pointed end indicating direction. + Clockface The dial face of a clock. A location identifier based on clockface numbering or anatomic subregion. @@ -1419,6 +1434,10 @@ Notebook A book for notes or memoranda. + + Questionnaire + A document consisting of questions and possibly responses, depending on whether it has been filled out. + Furnishing @@ -1765,6 +1784,10 @@ Attentive Concentrating and focusing mental energy on the task or surroundings. + + Distracted + Lacking in concentration because of being preoccupied. + Awake In a non sleeping state. @@ -2015,6 +2038,10 @@ takesValue + + valueClass + numericClass + @@ -2068,6 +2095,10 @@ Having genitalia and/or secondary sexual characteristics of indeterminate sex. + + Ethnicity + Belong to a social group that has a common national or cultural tradition. Use with Label to avoid extension. + Handedness Individual preference for use of a hand, known as the dominant hand. @@ -2084,6 +2115,10 @@ Having no overall dominance in the use of right or left hand or foot in the performance of tasks that require one hand or foot. + + Race + Belonging to a group sharing physical or social qualities as defined within a specified society. Use with Label to avoid extension. + @@ -2095,22 +2130,57 @@ Data-marker An indicator placed to mark something. + + Data-break-marker + An indicator place to indicate a gap in the data. + Temporal-marker An indicator placed at a particular time in the data. + + Inset + Marks an intermediate point in an ongoing event of temporal extent. + + topLevelTagGroup + + + reserved + + + relatedTag + Onset + Offset + + Onset - Labels the start or beginning of something, usually an event. + Marks the start of an ongoing event of temporal extent. topLevelTagGroup + + reserved + + + relatedTag + Inset + Offset + Offset - Labels the time at which something stops. + Marks the end of an event of temporal extent. topLevelTagGroup + + reserved + + + relatedTag + Onset + Inset + Pause @@ -2137,6 +2207,10 @@ takesValue + + valueClass + numericClass + @@ -2147,6 +2221,10 @@ takesValue + + valueClass + numericClass + @@ -2157,6 +2235,10 @@ takesValue + + valueClass + numericClass + @@ -2167,6 +2249,10 @@ takesValue + + valueClass + numericClass + @@ -2177,6 +2263,10 @@ takesValue + + valueClass + numericClass + @@ -2187,6 +2277,10 @@ takesValue + + valueClass + numericClass + @@ -2495,7 +2589,7 @@ Categorical values based on dividing a continuous variable into levels such as high and low. Cold - Characterized by an absence of heat. + Having an absence of heat. relatedTag Hot @@ -2520,12 +2614,20 @@ Hot - Characterized by an excess of heat. + Having an excess of heat. relatedTag Cold + + Large + Having a great extent such as in physical dimensions, period of time, amplitude or frequency. + + relatedTag + Small + + Liminal Situated at a sensory threshold that is barely perceptible or capable of eliciting a response. @@ -2537,7 +2639,7 @@ Loud - Characterizing a perceived high intensity of sound. + Having a perceived high intensity of sound. relatedTag Quiet @@ -2600,6 +2702,14 @@ Deep + + Small + Having a small extent such as in physical dimensions, period of time, amplitude or frequency. + + relatedTag + Large + + Smooth Having a surface free from bumps, ridges, or irregularities. @@ -2753,6 +2863,24 @@ + + Temperature + A measure of hot or cold based on the average kinetic energy of the atoms or molecules in the system. + + # + + takesValue + + + valueClass + numericClass + + + unitClass + temperatureUnits + + + Quantitative-value @@ -2785,6 +2913,20 @@ + + Item-index + The index of an item in a collection, sequence or other structure. (A (Item-index/3, B)) means that A is item number 3 in B. + + # + + takesValue + + + valueClass + numericClass + + + Item-interval An integer indicating how many items or entities have passed since the last one of these. An item interval of 0 indicates the current item. @@ -3106,15 +3248,15 @@ Angle The amount of inclination of one line to another or the plane of one object to another. - - unitClass - angleUnits - # takesValue + + unitClass + angleUnits + valueClass numericClass @@ -3315,7 +3457,17 @@ A characteristic of or relating to time or limited by time. Delay - Time during which some action is awaited. + The time at which an event start time is delayed from the current onset time. This tag defines the start time of an event of temporal extent and may be used with the Duration tag. + + topLevelTagGroup + + + reserved + + + relatedTag + Duration + # @@ -3333,7 +3485,17 @@ Duration - The period of time during which something occurs or continues. + The period of time during which an event occurs. This tag defines the end time of an event of temporal extent and may be used with the Delay tag. + + topLevelTagGroup + + + reserved + + + relatedTag + Delay + # @@ -3832,6 +3994,9 @@ requireChild + + reserved + # Name of the definition. @@ -3850,6 +4015,9 @@ requireChild + + reserved + tagGroup @@ -3870,6 +4038,9 @@ requireChild + + reserved + topLevelTagGroup @@ -3888,6 +4059,9 @@ Event-context A special HED tag inserted as part of a top-level tag group to contain information about the interrelated conditions under which the event occurs. The event context includes information about other events that are ongoing when this event happens. + + reserved + topLevelTagGroup @@ -4021,6 +4195,7 @@ valueClass numericClass + nameClass @@ -4083,7 +4258,7 @@ Sound-envelope-release - The time taken for the level to decay from the sustain level to zero after the key is released + The time taken for the level to decay from the sustain level to zero after the key is released. # @@ -4128,7 +4303,25 @@ valueClass - labelClass + nameClass + + + + + Sound-volume + The sound pressure level (SPL) usually the ratio to a reference signal estimated as the lower bound of hearing. + + # + + takesValue + + + valueClass + numericClass + + + unitClass + intensityUnits @@ -4205,613 +4398,613 @@ The appearance of objects (or light sources) described in terms of perception of their hue and lightness (or brightness) and saturation. CSS-color - One of 140 colors supported by all browsers. For more details such as the color RGB or HEX values, check: https://www.w3schools.com/colors/colors_groups.asp + One of 140 colors supported by all browsers. For more details such as the color RGB or HEX values, check: https://www.w3schools.com/colors/colors_groups.asp. Blue-color - CSS color group + CSS color group. CadetBlue - CSS-color 0x5F9EA0 + CSS-color 0x5F9EA0. SteelBlue - CSS-color 0x4682B4 + CSS-color 0x4682B4. LightSteelBlue - CSS-color 0xB0C4DE + CSS-color 0xB0C4DE. LightBlue - CSS-color 0xADD8E6 + CSS-color 0xADD8E6. PowderBlue - CSS-color 0xB0E0E6 + CSS-color 0xB0E0E6. LightSkyBlue - CSS-color 0x87CEFA + CSS-color 0x87CEFA. SkyBlue - CSS-color 0x87CEEB + CSS-color 0x87CEEB. CornflowerBlue - CSS-color 0x6495ED + CSS-color 0x6495ED. DeepSkyBlue - CSS-color 0x00BFFF + CSS-color 0x00BFFF. DodgerBlue - CSS-color 0x1E90FF + CSS-color 0x1E90FF. RoyalBlue - CSS-color 0x4169E1 + CSS-color 0x4169E1. Blue - CSS-color 0x0000FF + CSS-color 0x0000FF. MediumBlue - CSS-color 0x0000CD + CSS-color 0x0000CD. DarkBlue - CSS-color 0x00008B + CSS-color 0x00008B. Navy - CSS-color 0x000080 + CSS-color 0x000080. MidnightBlue - CSS-color 0x191970 + CSS-color 0x191970. Brown-color - CSS color group + CSS color group. Cornsilk - CSS-color 0xFFF8DC + CSS-color 0xFFF8DC. BlanchedAlmond - CSS-color 0xFFEBCD + CSS-color 0xFFEBCD. Bisque - CSS-color 0xFFE4C4 + CSS-color 0xFFE4C4. NavajoWhite - CSS-color 0xFFDEAD + CSS-color 0xFFDEAD. Wheat - CSS-color 0xF5DEB3 + CSS-color 0xF5DEB3. BurlyWood - CSS-color 0xDEB887 + CSS-color 0xDEB887. Tan - CSS-color 0xD2B48C + CSS-color 0xD2B48C. RosyBrown - CSS-color 0xBC8F8F + CSS-color 0xBC8F8F. SandyBrown - CSS-color 0xF4A460 + CSS-color 0xF4A460. GoldenRod - CSS-color 0xDAA520 + CSS-color 0xDAA520. DarkGoldenRod - CSS-color 0xB8860B + CSS-color 0xB8860B. Peru - CSS-color 0xCD853F + CSS-color 0xCD853F. Chocolate - CSS-color 0xD2691E + CSS-color 0xD2691E. Olive - CSS-color 0x808000 + CSS-color 0x808000. SaddleBrown - CSS-color 0x8B4513 + CSS-color 0x8B4513. Sienna - CSS-color 0xA0522D + CSS-color 0xA0522D. Brown - CSS-color 0xA52A2A + CSS-color 0xA52A2A. Maroon - CSS-color 0x800000 + CSS-color 0x800000. Cyan-color - CSS color group + CSS color group. Aqua - CSS-color 0x00FFFF + CSS-color 0x00FFFF. Cyan - CSS-color 0x00FFFF + CSS-color 0x00FFFF. LightCyan - CSS-color 0xE0FFFF + CSS-color 0xE0FFFF. PaleTurquoise - CSS-color 0xAFEEEE + CSS-color 0xAFEEEE. Aquamarine - CSS-color 0x7FFFD4 + CSS-color 0x7FFFD4. Turquoise - CSS-color 0x40E0D0 + CSS-color 0x40E0D0. MediumTurquoise - CSS-color 0x48D1CC + CSS-color 0x48D1CC. DarkTurquoise - CSS-color 0x00CED1 + CSS-color 0x00CED1. Green-color - CSS color group + CSS color group. GreenYellow - CSS-color 0xADFF2F + CSS-color 0xADFF2F. Chartreuse - CSS-color 0x7FFF00 + CSS-color 0x7FFF00. LawnGreen - CSS-color 0x7CFC00 + CSS-color 0x7CFC00. Lime - CSS-color 0x00FF00 + CSS-color 0x00FF00. LimeGreen - CSS-color 0x32CD32 + CSS-color 0x32CD32. PaleGreen - CSS-color 0x98FB98 + CSS-color 0x98FB98. LightGreen - CSS-color 0x90EE90 + CSS-color 0x90EE90. MediumSpringGreen - CSS-color 0x00FA9A + CSS-color 0x00FA9A. SpringGreen - CSS-color 0x00FF7F + CSS-color 0x00FF7F. MediumSeaGreen - CSS-color 0x3CB371 + CSS-color 0x3CB371. SeaGreen - CSS-color 0x2E8B57 + CSS-color 0x2E8B57. ForestGreen - CSS-color 0x228B22 + CSS-color 0x228B22. Green - CSS-color 0x008000 + CSS-color 0x008000. DarkGreen - CSS-color 0x006400 + CSS-color 0x006400. YellowGreen - CSS-color 0x9ACD32 + CSS-color 0x9ACD32. OliveDrab - CSS-color 0x6B8E23 + CSS-color 0x6B8E23. DarkOliveGreen - CSS-color 0x556B2F + CSS-color 0x556B2F. MediumAquaMarine - CSS-color 0x66CDAA + CSS-color 0x66CDAA. DarkSeaGreen - CSS-color 0x8FBC8F + CSS-color 0x8FBC8F. LightSeaGreen - CSS-color 0x20B2AA + CSS-color 0x20B2AA. DarkCyan - CSS-color 0x008B8B + CSS-color 0x008B8B. Teal - CSS-color 0x008080 + CSS-color 0x008080. Gray-color - CSS color group + CSS color group. Gainsboro - CSS-color 0xDCDCDC + CSS-color 0xDCDCDC. LightGray - CSS-color 0xD3D3D3 + CSS-color 0xD3D3D3. Silver - CSS-color 0xC0C0C0 + CSS-color 0xC0C0C0. DarkGray - CSS-color 0xA9A9A9 + CSS-color 0xA9A9A9. DimGray - CSS-color 0x696969 + CSS-color 0x696969. Gray - CSS-color 0x808080 + CSS-color 0x808080. LightSlateGray - CSS-color 0x778899 + CSS-color 0x778899. SlateGray - CSS-color 0x708090 + CSS-color 0x708090. DarkSlateGray - CSS-color 0x2F4F4F + CSS-color 0x2F4F4F. Black - CSS-color 0x000000 + CSS-color 0x000000. Orange-color - CSS color group + CSS color group. Orange - CSS-color 0xFFA500 + CSS-color 0xFFA500. DarkOrange - CSS-color 0xFF8C00 + CSS-color 0xFF8C00. Coral - CSS-color 0xFF7F50 + CSS-color 0xFF7F50. Tomato - CSS-color 0xFF6347 + CSS-color 0xFF6347. OrangeRed - CSS-color 0xFF4500 + CSS-color 0xFF4500. Pink-color - CSS color group + CSS color group. Pink - CSS-color 0xFFC0CB + CSS-color 0xFFC0CB. LightPink - CSS-color 0xFFB6C1 + CSS-color 0xFFB6C1. HotPink - CSS-color 0xFF69B4 + CSS-color 0xFF69B4. DeepPink - CSS-color 0xFF1493 + CSS-color 0xFF1493. PaleVioletRed - CSS-color 0xDB7093 + CSS-color 0xDB7093. MediumVioletRed - CSS-color 0xC71585 + CSS-color 0xC71585. Purple-color - CSS color group + CSS color group. Lavender - CSS-color 0xE6E6FA + CSS-color 0xE6E6FA. Thistle - CSS-color 0xD8BFD8 + CSS-color 0xD8BFD8. Plum - CSS-color 0xDDA0DD + CSS-color 0xDDA0DD. Orchid - CSS-color 0xDA70D6 + CSS-color 0xDA70D6. Violet - CSS-color 0xEE82EE + CSS-color 0xEE82EE. Fuchsia - CSS-color 0xFF00FF + CSS-color 0xFF00FF. Magenta - CSS-color 0xFF00FF + CSS-color 0xFF00FF. MediumOrchid - CSS-color 0xBA55D3 + CSS-color 0xBA55D3. DarkOrchid - CSS-color 0x9932CC + CSS-color 0x9932CC. DarkViolet - CSS-color 0x9400D3 + CSS-color 0x9400D3. BlueViolet - CSS-color 0x8A2BE2 + CSS-color 0x8A2BE2. DarkMagenta - CSS-color 0x8B008B + CSS-color 0x8B008B. Purple - CSS-color 0x800080 + CSS-color 0x800080. MediumPurple - CSS-color 0x9370DB + CSS-color 0x9370DB. MediumSlateBlue - CSS-color 0x7B68EE + CSS-color 0x7B68EE. SlateBlue - CSS-color 0x6A5ACD + CSS-color 0x6A5ACD. DarkSlateBlue - CSS-color 0x483D8B + CSS-color 0x483D8B. RebeccaPurple - CSS-color 0x663399 + CSS-color 0x663399. Indigo - CSS-color 0x4B0082 + CSS-color 0x4B0082. Red-color - CSS color group + CSS color group. LightSalmon - CSS-color 0xFFA07A + CSS-color 0xFFA07A. Salmon - CSS-color 0xFA8072 + CSS-color 0xFA8072. DarkSalmon - CSS-color 0xE9967A + CSS-color 0xE9967A. LightCoral - CSS-color 0xF08080 + CSS-color 0xF08080. IndianRed - CSS-color 0xCD5C5C + CSS-color 0xCD5C5C. Crimson - CSS-color 0xDC143C + CSS-color 0xDC143C. Red - CSS-color 0xFF0000 + CSS-color 0xFF0000. FireBrick - CSS-color 0xB22222 + CSS-color 0xB22222. DarkRed - CSS-color 0x8B0000 + CSS-color 0x8B0000. Yellow-color - CSS color group + CSS color group. Gold - CSS-color 0xFFD700 + CSS-color 0xFFD700. Yellow - CSS-color 0xFFFF00 + CSS-color 0xFFFF00. LightYellow - CSS-color 0xFFFFE0 + CSS-color 0xFFFFE0. LemonChiffon - CSS-color 0xFFFACD + CSS-color 0xFFFACD. LightGoldenRodYellow - CSS-color 0xFAFAD2 + CSS-color 0xFAFAD2. PapayaWhip - CSS-color 0xFFEFD5 + CSS-color 0xFFEFD5. Moccasin - CSS-color 0xFFE4B5 + CSS-color 0xFFE4B5. PeachPuff - CSS-color 0xFFDAB9 + CSS-color 0xFFDAB9. PaleGoldenRod - CSS-color 0xEEE8AA + CSS-color 0xEEE8AA. Khaki - CSS-color 0xF0E68C + CSS-color 0xF0E68C. DarkKhaki - CSS-color 0xBDB76B + CSS-color 0xBDB76B. White-color - CSS color group + CSS color group. White - CSS-color 0xFFFFFF + CSS-color 0xFFFFFF. Snow - CSS-color 0xFFFAFA + CSS-color 0xFFFAFA. HoneyDew - CSS-color 0xF0FFF0 + CSS-color 0xF0FFF0. MintCream - CSS-color 0xF5FFFA + CSS-color 0xF5FFFA. Azure - CSS-color 0xF0FFFF + CSS-color 0xF0FFFF. AliceBlue - CSS-color 0xF0F8FF + CSS-color 0xF0F8FF. GhostWhite - CSS-color 0xF8F8FF + CSS-color 0xF8F8FF. WhiteSmoke - CSS-color 0xF5F5F5 + CSS-color 0xF5F5F5. SeaShell - CSS-color 0xFFF5EE + CSS-color 0xFFF5EE. Beige - CSS-color 0xF5F5DC + CSS-color 0xF5F5DC. OldLace - CSS-color 0xFDF5E6 + CSS-color 0xFDF5E6. FloralWhite - CSS-color 0xFFFAF0 + CSS-color 0xFFFAF0. Ivory - CSS-color 0xFFFFF0 + CSS-color 0xFFFFF0. AntiqueWhite - CSS-color 0xFAEBD7 + CSS-color 0xFAEBD7. Linen - CSS-color 0xFAF0E6 + CSS-color 0xFAF0E6. LavenderBlush - CSS-color 0xFFF0F5 + CSS-color 0xFFF0F5. MistyRose - CSS-color 0xFFE4E1 + CSS-color 0xFFE4E1. @@ -4832,7 +5025,7 @@ Using a color map composed of shades of gray, varying from black at the weakest intensity to white at the strongest. # - White intensity between 0 and 1 + White intensity between 0 and 1. takesValue @@ -4850,7 +5043,7 @@ Attribute of a visual sensation according to which an area appears to be similar to one of the perceived colors. # - Angular value between 0 and 360 + Angular value between 0 and 360. takesValue @@ -4865,7 +5058,7 @@ Colorfulness of a stimulus relative to its own brightness. # - B value of RGB between 0 and 1 + B value of RGB between 0 and 1. takesValue @@ -4898,7 +5091,7 @@ The red component. # - R value of RGB between 0 and 1 + R value of RGB between 0 and 1. takesValue @@ -4913,7 +5106,7 @@ The blue component. # - B value of RGB between 0 and 1 + B value of RGB between 0 and 1. takesValue @@ -4928,7 +5121,7 @@ The green component. # - G value of RGB between 0 and 1 + G value of RGB between 0 and 1. takesValue @@ -5150,7 +5343,7 @@ Incidental - Usually associated with a sensory event intended to give instructions to the participant about the task or behavior. + A sensory or other type of event that is unrelated to the task or experiment. Instructional @@ -5197,6 +5390,14 @@ Correction An action offering an improvement to replace a mistake or error. + + Done-indication + An action that indicates that the participant has completed this step in the task. + + relatedTag + Ready-indication + + Incorrect-action An action considered wrong or incorrect in the context of the task. @@ -5249,6 +5450,14 @@ Miss + + Ready-indication + An action that indicates that the participant is ready to perform the next step in the task. + + relatedTag + Done-indication + + Task-relationship @@ -5407,144 +5616,171 @@ Relation Concerns the way in which two or more people or things are connected. + + extensionAllowed + Comparative-relation - Something considered in comparison to something else. + Something considered in comparison to something else. The first entity is the focus. Approximately-equal-to - (A (Approximately-equal-to B)) indicates that A and B have almost the same value. Here A and B could refer to sizes, orders, positions or other quantities. + (A, (Approximately-equal-to, B)) indicates that A and B have almost the same value. Here A and B could refer to sizes, orders, positions or other quantities. Less-than - (A (Less-than B)) indicates that A is smaller than B. Here A and B could refer to sizes, orders, positions or other quantities. + (A, (Less-than, B)) indicates that A is smaller than B. Here A and B could refer to sizes, orders, positions or other quantities. Less-than-or-equal-to - (A (Less-than-or-equal-to B)) indicates that the relative size or order of A is smaller than or equal to B. + (A, (Less-than-or-equal-to, B)) indicates that the relative size or order of A is smaller than or equal to B. Greater-than - (A (Greater-than B)) indicates that the relative size or order of A is bigger than that of B. + (A, (Greater-than, B)) indicates that the relative size or order of A is bigger than that of B. Greater-than-or-equal-to - (A (Greater-than-or-equal-to B)) indicates that the relative size or order of A is bigger than or the same as that of B. + (A, (Greater-than-or-equal-to, B)) indicates that the relative size or order of A is bigger than or the same as that of B. Equal-to - (A (Equal-to B)) indicates that the size or order of A is the same as that of B. + (A, (Equal-to, B)) indicates that the size or order of A is the same as that of B. Not-equal-to - (A (Not-equal-to B)) indicates that the size or order of A is not the same as that of B. + (A, (Not-equal-to, B)) indicates that the size or order of A is not the same as that of B. Connective-relation - Indicates two items are related in some way. + Indicates two entities are related in some way. The first entity is the focus. Belongs-to - (A (Belongs-to B)) indicates that A is a member of B. + (A, (Belongs-to, B)) indicates that A is a member of B. Connected-to - (A (Connected-to) B) indicates that A is related to B in some respect, usually through a direct link. + (A, (Connected-to, B)) indicates that A is related to B in some respect, usually through a direct link. Contained-in - (A (Contained-in B)) indicates that A is completely inside of B. + (A, (Contained-in, B)) indicates that A is completely inside of B. Described-by - (A (Described-by B)) indicates that B provides information about A. + (A, (Described-by, B)) indicates that B provides information about A. From-to - (A (From-to B)) indicates a directional relation from A to B. A is considered the source. + (A, (From-to, B)) indicates a directional relation from A to B. A is considered the source. Group-of - (A (Group-of B)) indicates A is a group of items of type B. + (A, (Group-of, B)) indicates A is a group of items of type B. Implied-by - (A (Implied-by B)) indicates B is suggested by A. + (A, (Implied-by, B)) indicates B is suggested by A. + + + Includes + (A, (Includes, B)) indicates that A has B as a member or part. Interacts-with - (A (Interacts-with B)) indicates A and B interact, possibly reciprocally. + (A, (Interacts-with, B)) indicates A and B interact, possibly reciprocally. Member-of - (A (Member-of B)) indicates A is a member of group B. + (A, (Member-of, B)) indicates A is a member of group B. Part-of - (A (Part-of B)) indicates A is a part of the whole B. + (A, (Part-of, B)) indicates A is a part of the whole B. Performed-by - (A (Performed-by B)) Indicates that ction or procedure A was carried out by agent B. + (A, (Performed-by, B)) indicates that the action or procedure A was carried out by agent B. + + + Performed-using + (A, (Performed-using, B)) indicates that the action or procedure A was accomplished using B. Related-to - (A (Relative-to B)) indicates A is a part of the whole B. + (A, (Related-to, B)) indicates A has some relationship to B. + + + Unrelated-to + (A, (Unrelated-to, B)) indicates that A is not related to B. For example, A is not related to Task. Directional-relation - A relationship indicating direction of change. + A relationship indicating direction of change of one entity relative to another. The first entity is the focus. Away-from - Go away from a place or object. + (A, (Away-from, B)) indicates that A is going or has moved away from B. The meaning depends on A and B. Towards - Moving in the direction of. A relation binding a relational quality or disposition to the relevant type of entity + (A, (Towards, B)) indicates that A is going to or has moved to B. The meaning depends on A and B. + + + + Logical-relation + Indicating a logical relationship between entities. The first entity is usually the focus. + + And + (A, (And, B)) means A and B are both in effect. + + + Or + (A, (Or, B)) means at least one of A and B are in effect. Spatial-relation - Indicating information about position. + Indicating a relationship about position between entities. Above - (A (Adjacent-to B)) means A is in a place or position that is higher than B. + (A, (Above, B)) means A is in a place or position that is higher than B. Across-from - (A (Across-from B)) means A is on the opposite side of something from B. + (A, (Across-from, B)) means A is on the opposite side of something from B. Adjacent-to - (A (Adjacent-to B)) indicates that A is next to B in time or space. + (A, (Adjacent-to, B)) indicates that A is next to B in time or space. Ahead-of - (A (Ahead-of B)) indicates that A is further forward in time or space in B. + (A, (Ahead-of, B)) indicates that A is further forward in time or space in B. Around - (A (Around B)) means A is in or near the present place or situation of B. + (A, (Around, B)) means A is in or near the present place or situation of B. Behind - (A (Behind B)) means A is at or to the far side of B, typically so as to be hidden by it. + (A, (Behind, B)) means A is at or to the far side of B, typically so as to be hidden by it. Below - (A (Below B)) means A is in a place or position that is lower than the position of B. + (A, (Below, B)) means A is in a place or position that is lower than the position of B. Between - (A (Between, (B, C))) means A is in the space or interval separating B and C. + (A, (Between, (B, C))) means A is in the space or interval separating B and C. Bilateral-to - (A (Bilateral B)) means A is on both sides of B or affects both sides of B. + (A, (Bilateral, B)) means A is on both sides of B or affects both sides of B. Bottom-edge-of - (A (Bottom-edge-of B)) means A is on the bottom most part or or near the boundary of B. + (A, (Bottom-edge-of, B)) means A is on the bottom most part or or near the boundary of B. relatedTag Left-edge-of @@ -5554,27 +5790,27 @@ Boundary-of - (A (Boundary-of B)) means A is on or part of the edge or boundary of B. + (A, (Boundary-of, B)) means A is on or part of the edge or boundary of B. Center-of - (A (Center-of B)) means A is at a point or or in an area that is approximately central within B. + (A, (Center-of, B)) means A is at a point or or in an area that is approximately central within B. Close-to - (A (Close-to B)) means A is at a small distance from or is located near in space to B. + (A, (Close-to, B)) means A is at a small distance from or is located near in space to B. Far-from - (A (Far-from B)) means A is at a large distance from or is not located near in space to B. + (A, (Far-from, B)) means A is at a large distance from or is not located near in space to B. In-front-of - (A (In-front-of B)) means A is in a position just ahead or at the front part of B, potentially partially blocking B from view. + (A, (In-front-of, B)) means A is in a position just ahead or at the front part of B, potentially partially blocking B from view. Left-edge-of - (A (Left-edge-of B)) means A is located on the left side of B on or near the boundary of B. + (A, (Left-edge-of, B)) means A is located on the left side of B on or near the boundary of B. relatedTag Bottom-edge-of @@ -5584,43 +5820,62 @@ Left-side-of - (A (Left-side-of B)) means A is located on the left side of B usually as part of B. + (A, (Left-side-of, B)) means A is located on the left side of B usually as part of B. relatedTag Right-side-of + + Lower-center-of + (A, (Lower-center-of, B)) means A is situated on the lower center part of B (due south). This relation is often used to specify qualitative information about screen position. + + relatedTag + Center-of + Lower-left-of + Lower-right-of + Upper-center-of + Upper-right-of + + Lower-left-of - (A (Lower-left-of B)) means A is situated on the lower left part of B. This relation is often used to specify qualitative information about screen position. + (A, (Lower-left-of, B)) means A is situated on the lower left part of B. This relation is often used to specify qualitative information about screen position. relatedTag + Center-of + Lower-center-of Lower-right-of + Upper-center-of Upper-left-of Upper-right-of Lower-right-of - (A (Lower-right-of B)) means A is situated on the lower right part of B. This relation is often used to specify qualitative information about screen position. + (A, (Lower-right-of, B)) means A is situated on the lower right part of B. This relation is often used to specify qualitative information about screen position. relatedTag + Center-of + Lower-center-of + Lower-left-of Upper-left-of + Upper-center-of Upper-left-of Lower-right-of Outside-of - (A (Outside-of B)) means A is located in the space around but not including B. + (A, (Outside-of, B)) means A is located in the space around but not including B. Over - (A (over B)) means A above is above B so as to cover or protect or A extends over the a general area as from a from a vantage point. + (A, (Over, B)) means A above is above B so as to cover or protect or A extends over the a general area as from a from a vantage point. Right-edge-of - (A (Right-edge-of B)) means A is located on the right side of B on or near the boundary of B. + (A, (Right-edge-of, B)) means A is located on the right side of B on or near the boundary of B. relatedTag Bottom-edge-of @@ -5630,7 +5885,7 @@ Right-side-of - (A (Right-side-of B)) means A is located on the right side of B usually as part of B. + (A, (Right-side-of, B)) means A is located on the right side of B usually as part of B. relatedTag Left-side-of @@ -5638,15 +5893,15 @@ To-left-of - (A (To-left-of B)) means A is located on or directed toward the side to the west of B when B is facing north. This term is used when A is not part of B. + (A, (To-left-of, B)) means A is located on or directed toward the side to the west of B when B is facing north. This term is used when A is not part of B. To-right-of - (A (To-right-of B)) means A is located on or directed toward the side to the east of B when B is facing north. This term is used when A is not part of B. + (A, (To-right-of, B)) means A is located on or directed toward the side to the east of B when B is facing north. This term is used when A is not part of B. Top-edge-of - (A (Top-edge-of B)) means A is on the uppermost part or or near the boundary of B. + (A, (Top-edge-of, B)) means A is on the uppermost part or or near the boundary of B. relatedTag Left-edge-of @@ -5656,63 +5911,82 @@ Top-of - (A (Top-of B)) means A is on the uppermost part, side, or surface of B. + (A, (Top-of, B)) means A is on the uppermost part, side, or surface of B. + + + Upper-center-of + (A, (Upper-center-of, B)) means A is situated on the upper center part of B (due north). This relation is often used to specify qualitative information about screen position. + + relatedTag + Center-of + Lower-center-of + Lower-left-of + Lower-right-of + Upper-center-of + Upper-right-of + Upper-left-of - (A (Upper-left-of B)) means A is situated on the upper left part of B. This relation is often used to specify qualitative information about screen position. + (A, (Upper-left-of, B)) means A is situated on the upper left part of B. This relation is often used to specify qualitative information about screen position. relatedTag + Center-of + Lower-center-of Lower-left-of Lower-right-of + Upper-center-of Upper-right-of Upper-right-of - (A (Upper-right-of B)) means A is situated on the upper right part of B. This relation is often used to specify qualitative information about screen position. + (A, (Upper-right-of, B)) means A is situated on the upper right part of B. This relation is often used to specify qualitative information about screen position. relatedTag + Center-of + Lower-center-of Lower-left-of Upper-left-of + Upper-center-of Lower-right-of Underneath - (A (Underneath B)) means A is situated directly below and may be concealed by B. + (A, (Underneath, B)) means A is situated directly below and may be concealed by B. Within - (A (Within B)) means A is on the inside of or contained in B. + (A, (Within, B)) means A is on the inside of or contained in B. Temporal-relation - Any relationship which includes a temporal or time-based component. + A relationship that includes a temporal or time-based component. After - (A After B) means A happens at a time subsequent to a reference time related to B. + (A, (After B)) means A happens at a time subsequent to a reference time related to B. Asynchronous-with - (A Asynchronous-with B) means A happens at times not occurring at the same time or having the same period or phase as B. + (A, (Asynchronous-with, B)) means A happens at times not occurring at the same time or having the same period or phase as B. Before - (A Before B) means A happens at a time earlier in time or order than B. + (A, (Before B)) means A happens at a time earlier in time or order than B. During - (A During B) means A happens at some point in a given period of time in which B is ongoing. + (A, (During, B)) means A happens at some point in a given period of time in which B is ongoing. Synchronous-with - (A Synchronous-with B) means A happens at occurs at the same time or rate as B. + (A, (Synchronous-with, B)) means A happens at occurs at the same time or rate as B. Waiting-for - (A Waiting-for B) means A pauses for something to happen in B. + (A, (Waiting-for, B)) means A pauses for something to happen in B. @@ -5732,6 +6006,10 @@ unitSymbol + + conversionFactor + 1.0 + @@ -5745,6 +6023,10 @@ SIUnit + + conversionFactor + 1.0 + rad @@ -5754,9 +6036,17 @@ unitSymbol + + conversionFactor + 1.0 + degree + + conversionFactor + 0.0174533 + @@ -5773,6 +6063,10 @@ unitSymbol + + conversionFactor + 1.0 + @@ -5784,6 +6078,10 @@ dollar + + conversionFactor + 1.0 + $ @@ -5793,11 +6091,48 @@ unitSymbol + + conversionFactor + 1.0 + + + + euro point + + electricPotentialUnits + + defaultUnits + uv + + + v + + SIUnit + + + unitSymbol + + + conversionFactor + 0.000001 + + + + Volt + + SIUnit + + + conversionFactor + 0.000001 + + + frequencyUnits @@ -5809,6 +6144,10 @@ SIUnit + + conversionFactor + 1.0 + Hz @@ -5818,6 +6157,10 @@ unitSymbol + + conversionFactor + 1.0 + @@ -5828,10 +6171,14 @@ dB - Intensity expressed as ratio to a threshold. Often used for sound intensity. + Intensity expressed as ratio to a threshold. May be used for sound intensity. unitSymbol + + conversionFactor + 1.0 + candela @@ -5862,6 +6209,41 @@ unitSymbol + + conversionFactor + 1.0 + + + + + magneticFieldUnits + Units used to magnetic field intensity. + + defaultUnits + fT + + + tesla + + SIUnit + + + conversionFactor + 10^-15 + + + + T + + SIUnit + + + unitSymbol + + + conversionFactor + 10^-15 + @@ -5875,6 +6257,10 @@ SIUnit + + conversionFactor + 1.0 + B @@ -5884,6 +6270,10 @@ unitSymbol + + conversionFactor + 1.0 + @@ -5894,15 +6284,37 @@ foot + + conversionFactor + 0.3048 + inch + + conversionFactor + 0.0254 + + + + meter + + SIUnit + + + conversionFactor + 1.0 + metre SIUnit + + conversionFactor + 1.0 + m @@ -5912,9 +6324,17 @@ unitSymbol + + conversionFactor + 1.0 + mile + + conversionFactor + 1609.34 + @@ -5931,18 +6351,56 @@ unitSymbol + + conversionFactor + 1.0 + mph unitSymbol + + conversionFactor + 0.44704 + kph unitSymbol + + conversionFactor + 0.277778 + + + + + temperatureUnits + + degree Celsius + + SIUnit + + + conversionFactor + 1.0 + + + + oC + + SIUnit + + + unitSymbol + + + conversionFactor + 1.0 + @@ -5956,6 +6414,10 @@ SIUnit + + conversionFactor + 1.0 + s @@ -5965,16 +6427,32 @@ unitSymbol + + conversionFactor + 1.0 + day + + conversionFactor + 86400 + minute + + conversionFactor + 60 + hour Should be in 24-hour format. + + conversionFactor + 3600 + @@ -5991,6 +6469,10 @@ unitSymbol + + conversionFactor + 1.0 + @@ -6007,301 +6489,477 @@ unitSymbol + + conversionFactor + 1.0 + gram SIUnit + + conversionFactor + 1.0 + pound + + conversionFactor + 453.592 + lb + + conversionFactor + 453.592 + deca - SI unit multiple representing 10^1 + SI unit multiple representing 10^1. SIUnitModifier + + conversionFactor + 10.0 + da - SI unit multiple representing 10^1 + SI unit multiple representing 10^1. SIUnitSymbolModifier + + conversionFactor + 10.0 + hecto - SI unit multiple representing 10^2 + SI unit multiple representing 10^2. SIUnitModifier + + conversionFactor + 100.0 + h - SI unit multiple representing 10^2 + SI unit multiple representing 10^2. SIUnitSymbolModifier + + conversionFactor + 100.0 + kilo - SI unit multiple representing 10^3 + SI unit multiple representing 10^3. SIUnitModifier + + conversionFactor + 1000.0 + k - SI unit multiple representing 10^3 + SI unit multiple representing 10^3. SIUnitSymbolModifier + + conversionFactor + 1000.0 + mega - SI unit multiple representing 10^6 + SI unit multiple representing 10^6. SIUnitModifier + + conversionFactor + 10^6 + M - SI unit multiple representing 10^6 + SI unit multiple representing 10^6. SIUnitSymbolModifier + + conversionFactor + 10^6 + giga - SI unit multiple representing 10^9 + SI unit multiple representing 10^9. SIUnitModifier + + conversionFactor + 10^9 + G - SI unit multiple representing 10^9 + SI unit multiple representing 10^9. SIUnitSymbolModifier + + conversionFactor + 10^9 + tera - SI unit multiple representing 10^12 + SI unit multiple representing 10^12. SIUnitModifier + + conversionFactor + 10^12 + T - SI unit multiple representing 10^12 + SI unit multiple representing 10^12. SIUnitSymbolModifier + + conversionFactor + 10^12 + peta - SI unit multiple representing 10^15 + SI unit multiple representing 10^15. SIUnitModifier + + conversionFactor + 10^15 + P - SI unit multiple representing 10^15 + SI unit multiple representing 10^15. SIUnitSymbolModifier + + conversionFactor + 10^15 + exa - SI unit multiple representing 10^18 + SI unit multiple representing 10^18. SIUnitModifier + + conversionFactor + 10^18 + E - SI unit multiple representing 10^18 + SI unit multiple representing 10^18. SIUnitSymbolModifier + + conversionFactor + 10^18 + zetta - SI unit multiple representing 10^21 + SI unit multiple representing 10^21. SIUnitModifier + + conversionFactor + 10^21 + Z - SI unit multiple representing 10^21 + SI unit multiple representing 10^21. SIUnitSymbolModifier + + conversionFactor + 10^21 + yotta - SI unit multiple representing 10^24 + SI unit multiple representing 10^24. SIUnitModifier + + conversionFactor + 10^24 + Y - SI unit multiple representing 10^24 + SI unit multiple representing 10^24. SIUnitSymbolModifier + + conversionFactor + 10^24 + deci - SI unit submultiple representing 10^-1 + SI unit submultiple representing 10^-1. SIUnitModifier + + conversionFactor + 0.1 + d - SI unit submultiple representing 10^-1 + SI unit submultiple representing 10^-1. SIUnitSymbolModifier + + conversionFactor + 0.1 + centi - SI unit submultiple representing 10^-2 + SI unit submultiple representing 10^-2. SIUnitModifier + + conversionFactor + 0.01 + c - SI unit submultiple representing 10^-2 + SI unit submultiple representing 10^-2. SIUnitSymbolModifier + + conversionFactor + 0.01 + milli - SI unit submultiple representing 10^-3 + SI unit submultiple representing 10^-3. SIUnitModifier + + conversionFactor + 0.001 + m - SI unit submultiple representing 10^-3 + SI unit submultiple representing 10^-3. SIUnitSymbolModifier + + conversionFactor + 0.001 + micro - SI unit submultiple representing 10^-6 + SI unit submultiple representing 10^-6. SIUnitModifier + + conversionFactor + 10^-6 + u - SI unit submultiple representing 10^-6 + SI unit submultiple representing 10^-6. SIUnitSymbolModifier + + conversionFactor + 10^-6 + nano - SI unit submultiple representing 10^-9 + SI unit submultiple representing 10^-9. SIUnitModifier + + conversionFactor + 10^-9 + n - SI unit submultiple representing 10^-9 + SI unit submultiple representing 10^-9. SIUnitSymbolModifier + + conversionFactor + 10^-9 + pico - SI unit submultiple representing 10^-12 + SI unit submultiple representing 10^-12. SIUnitModifier + + conversionFactor + 10^-12 + p - SI unit submultiple representing 10^-12 + SI unit submultiple representing 10^-12. SIUnitSymbolModifier + + conversionFactor + 10^-12 + femto - SI unit submultiple representing 10^-15 + SI unit submultiple representing 10^-15. SIUnitModifier + + conversionFactor + 10^-15 + f - SI unit submultiple representing 10^-15 + SI unit submultiple representing 10^-15. SIUnitSymbolModifier + + conversionFactor + 10^-15 + atto - SI unit submultiple representing 10^-18 + SI unit submultiple representing 10^-18. SIUnitModifier + + conversionFactor + 10^-18 + a - SI unit submultiple representing 10^-18 + SI unit submultiple representing 10^-18. SIUnitSymbolModifier + + conversionFactor + 10^-18 + zepto - SI unit submultiple representing 10^-21 + SI unit submultiple representing 10^-21. SIUnitModifier + + conversionFactor + 10^-21 + z - SI unit submultiple representing 10^-21 + SI unit submultiple representing 10^-21. SIUnitSymbolModifier + + conversionFactor + 10^-21 + yocto - SI unit submultiple representing 10^-24 + SI unit submultiple representing 10^-24. SIUnitModifier + + conversionFactor + 10^-24 + y - SI unit submultiple representing 10^-24 + SI unit submultiple representing 10^-24. SIUnitSymbolModifier + + conversionFactor + 10^-24 + @@ -6383,6 +7041,23 @@ valueClassProperty + + conversionFactor + The multiplicative factor to multiply these units to convert to default units. + + unitProperty + + + unitModifierProperty + + + + deprecatedFrom + Indicates that this element is deprecated. The value of the attribute is the latest schema version in which the element appeared in undeprecated form. + + elementProperty + + defaultUnits A schema attribute of unit classes specifying the default units to use if the placeholder has a unit class but the substituted value has no units. @@ -6396,6 +7071,19 @@ boolProperty + + nodeProperty + + + isInheritedProperty + + + + inLibrary + Indicates this schema element came from the named library schema, not the standard schema. This attribute is added by tools when a library schema is merged into its partnered standard schema. + + elementProperty + recommended @@ -6403,10 +7091,19 @@ boolProperty + + nodeProperty + relatedTag A schema attribute suggesting HED tags that are closely related to this tag. This attribute is used by tagging tools. + + nodeProperty + + + isInheritedProperty + requireChild @@ -6414,6 +7111,9 @@ boolProperty + + nodeProperty + required @@ -6421,6 +7121,26 @@ boolProperty + + nodeProperty + + + + reserved + A schema attribute indicating that this tag has special meaning and requires special handling by tools. + + boolProperty + + + nodeProperty + + + + rooted + Indicates a top-level library schema node is identical to a node of the same name in the partnered standard schema. This attribute can only appear in nodes that have the inLibrary schema attribute. + + nodeProperty + SIUnit @@ -6455,6 +7175,12 @@ suggestedTag A schema attribute that indicates another tag that is often associated with this tag. This attribute is used by tagging tools to provide tagging suggestions. + + nodeProperty + + + isInheritedProperty + tagGroup @@ -6462,6 +7188,9 @@ boolProperty + + nodeProperty + takesValue @@ -6469,13 +7198,19 @@ boolProperty + + nodeProperty + topLevelTagGroup - A schema attribute indicating that this tag (or its descendants) can only appear in a top-level tag group. + A schema attribute indicating that this tag (or its descendants) can only appear in a top-level tag group. A tag group can have at most one tag with this attribute. boolProperty + + nodeProperty + unique @@ -6483,10 +7218,16 @@ boolProperty + + nodeProperty + unitClass A schema attribute specifying which unit class this value tag belongs to. + + nodeProperty + unitPrefix @@ -6511,6 +7252,9 @@ valueClass A schema attribute specifying which value class this value tag belongs to. + + nodeProperty + @@ -6518,6 +7262,18 @@ boolProperty Indicates that the schema attribute represents something that is either true or false and does not have a value. Attributes without this value are assumed to have string values. + + elementProperty + Indicates this schema attribute can apply to any type of element(tag term, unit class, etc). + + + isInheritedProperty + Indicates that this attribute is inherited by child nodes. This property only applies to schema attributes for nodes. + + + nodeProperty + Indicates this schema attribute applies to node (tag-term) elements. This was added to allow for an attribute to apply to multiple elements. + unitClassProperty Indicates that the schema attribute is meant to be applied to unit classes. @@ -6535,6 +7291,6 @@ Indicates that the schema attribute is meant to be applied to value classes. - This is an updated version of the schema format. The properties are now part of the schema. The schema attributes are designed to be checked in software rather than hard-coded. The schema attributes, themselves have properties. + This schema is released under the Creative Commons Attribution 4.0 International and is a product of the HED Working Group. The DOI for the latest version of the HED standard schema is 10.5281/zenodo.7876037. diff --git a/hedcode/jupyter_notebooks/README.md b/hedcode/jupyter_notebooks/README.md index e4f39325..4532fe67 100644 --- a/hedcode/jupyter_notebooks/README.md +++ b/hedcode/jupyter_notebooks/README.md @@ -1,25 +1,3 @@ -**This section is out of date and will be updated soon.** -The demo scripts use data in `../data/sternberg` and in the reduced -attention shift dataset: - -[https://github.com/hed-standard/hed-examples/data/eeg_ds0028932](https://github.com/hed-standard/hed-examples/data/eeg_ds0028932). - -The notebooks are designed to be executed in the following order: - -1. `summarize_events.ipynb` gather all of the unique values in the columns of -all of the events files in a BIDS dataset. - -2. `create_template.ipynb` gathers all of the unique combinations of values in -a specified group of columns (the key columns) and creates a template file -for you to specify the mapping between each unique key and values in target columns. -This is the **event design** that must be filled in by the user. - -3. `remap_events.ipynb` creates new event files using the template from the previous -step to remap columns. - -4. `tag_columns.ipynb` demonstrates how to create a list of the unique -values in the specified columns in a flattened form so that they can be tagged. - These notebooks require HEDTOOLS, which can be installed using `pip` or directly. diff --git a/hedcode/jupyter_notebooks/bids/extract_json_template.ipynb b/hedcode/jupyter_notebooks/bids/extract_json_template.ipynb index dc20469c..996dd8ab 100644 --- a/hedcode/jupyter_notebooks/bids/extract_json_template.ipynb +++ b/hedcode/jupyter_notebooks/bids/extract_json_template.ipynb @@ -1,20 +1,12 @@ { "cells": [ - { - "cell_type": "code", - "execution_count": null, - "outputs": [], - "source": [], - "metadata": { - "collapsed": false - } - }, { "cell_type": "markdown", "source": [ "## Generate a JSON events sidecar template from a dataset.\n", "\n", - "General strategy for machine-actionable annotation using HED in BIDS is to create a single `events.json` sidecar file in the BIDS dataset root directory. Ideally, this sidecar will contain all the annotations needed for users to understand and analyze the data.\n", + "General strategy for machine-actionable annotation using HED in BIDS is to create a single `events.json` sidecar file in the BIDS dataset root directory.\n", + "Ideally, this sidecar will contain all the annotations needed for users to understand and analyze the data.\n", "\n", "(See the [**BIDS annotation quickstart**](https://www.hed-resources.org/en/latest/BidsAnnotationQuickstart.html) for additional information on this strategy.)\n", "\n", @@ -42,17 +34,278 @@ }, { "cell_type": "code", - "execution_count": null, - "outputs": [], + "execution_count": 2, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "{\n", + " \"event_type\": {\n", + " \"Description\": \"Description for event_type\",\n", + " \"HED\": {\n", + " \"double_press\": \"(Label/event_type, Label/double_press)\",\n", + " \"left_press\": \"(Label/event_type, Label/left_press)\",\n", + " \"right_press\": \"(Label/event_type, Label/right_press)\",\n", + " \"setup_right_sym\": \"(Label/event_type, Label/setup_right_sym)\",\n", + " \"show_circle\": \"(Label/event_type, Label/show_circle)\",\n", + " \"show_cross\": \"(Label/event_type, Label/show_cross)\",\n", + " \"show_face\": \"(Label/event_type, Label/show_face)\",\n", + " \"show_face_initial\": \"(Label/event_type, Label/show_face_initial)\"\n", + " },\n", + " \"Levels\": {\n", + " \"double_press\": \"Here describe column value double_press of column event_type\",\n", + " \"left_press\": \"Here describe column value left_press of column event_type\",\n", + " \"right_press\": \"Here describe column value right_press of column event_type\",\n", + " \"setup_right_sym\": \"Here describe column value setup_right_sym of column event_type\",\n", + " \"show_circle\": \"Here describe column value show_circle of column event_type\",\n", + " \"show_cross\": \"Here describe column value show_cross of column event_type\",\n", + " \"show_face\": \"Here describe column value show_face of column event_type\",\n", + " \"show_face_initial\": \"Here describe column value show_face_initial of column event_type\"\n", + " }\n", + " },\n", + " \"face_type\": {\n", + " \"Description\": \"Description for face_type\",\n", + " \"HED\": {\n", + " \"famous_face\": \"(Label/face_type, Label/famous_face)\",\n", + " \"nan\": \"(Label/face_type, Label/nan)\",\n", + " \"scrambled_face\": \"(Label/face_type, Label/scrambled_face)\",\n", + " \"unfamiliar_face\": \"(Label/face_type, Label/unfamiliar_face)\"\n", + " },\n", + " \"Levels\": {\n", + " \"famous_face\": \"Here describe column value famous_face of column face_type\",\n", + " \"nan\": \"Here describe column value nan of column face_type\",\n", + " \"scrambled_face\": \"Here describe column value scrambled_face of column face_type\",\n", + " \"unfamiliar_face\": \"Here describe column value unfamiliar_face of column face_type\"\n", + " }\n", + " },\n", + " \"rep_status\": {\n", + " \"Description\": \"Description for rep_status\",\n", + " \"HED\": {\n", + " \"delayed_repeat\": \"(Label/rep_status, Label/delayed_repeat)\",\n", + " \"first_show\": \"(Label/rep_status, Label/first_show)\",\n", + " \"immediate_repeat\": \"(Label/rep_status, Label/immediate_repeat)\",\n", + " \"nan\": \"(Label/rep_status, Label/nan)\"\n", + " },\n", + " \"Levels\": {\n", + " \"delayed_repeat\": \"Here describe column value delayed_repeat of column rep_status\",\n", + " \"first_show\": \"Here describe column value first_show of column rep_status\",\n", + " \"immediate_repeat\": \"Here describe column value immediate_repeat of column rep_status\",\n", + " \"nan\": \"Here describe column value nan of column rep_status\"\n", + " }\n", + " },\n", + " \"trial\": {\n", + " \"Description\": \"Description for trial\",\n", + " \"HED\": {\n", + " \"1.0\": \"(Label/trial, Label/1_0)\",\n", + " \"10.0\": \"(Label/trial, Label/10_0)\",\n", + " \"11.0\": \"(Label/trial, Label/11_0)\",\n", + " \"12.0\": \"(Label/trial, Label/12_0)\",\n", + " \"13.0\": \"(Label/trial, Label/13_0)\",\n", + " \"14.0\": \"(Label/trial, Label/14_0)\",\n", + " \"15.0\": \"(Label/trial, Label/15_0)\",\n", + " \"16.0\": \"(Label/trial, Label/16_0)\",\n", + " \"17.0\": \"(Label/trial, Label/17_0)\",\n", + " \"18.0\": \"(Label/trial, Label/18_0)\",\n", + " \"19.0\": \"(Label/trial, Label/19_0)\",\n", + " \"2.0\": \"(Label/trial, Label/2_0)\",\n", + " \"20.0\": \"(Label/trial, Label/20_0)\",\n", + " \"21.0\": \"(Label/trial, Label/21_0)\",\n", + " \"22.0\": \"(Label/trial, Label/22_0)\",\n", + " \"23.0\": \"(Label/trial, Label/23_0)\",\n", + " \"24.0\": \"(Label/trial, Label/24_0)\",\n", + " \"25.0\": \"(Label/trial, Label/25_0)\",\n", + " \"26.0\": \"(Label/trial, Label/26_0)\",\n", + " \"27.0\": \"(Label/trial, Label/27_0)\",\n", + " \"28.0\": \"(Label/trial, Label/28_0)\",\n", + " \"29.0\": \"(Label/trial, Label/29_0)\",\n", + " \"3.0\": \"(Label/trial, Label/3_0)\",\n", + " \"30.0\": \"(Label/trial, Label/30_0)\",\n", + " \"31.0\": \"(Label/trial, Label/31_0)\",\n", + " \"32.0\": \"(Label/trial, Label/32_0)\",\n", + " \"33.0\": \"(Label/trial, Label/33_0)\",\n", + " \"34.0\": \"(Label/trial, Label/34_0)\",\n", + " \"35.0\": \"(Label/trial, Label/35_0)\",\n", + " \"36.0\": \"(Label/trial, Label/36_0)\",\n", + " \"37.0\": \"(Label/trial, Label/37_0)\",\n", + " \"38.0\": \"(Label/trial, Label/38_0)\",\n", + " \"39.0\": \"(Label/trial, Label/39_0)\",\n", + " \"4.0\": \"(Label/trial, Label/4_0)\",\n", + " \"40.0\": \"(Label/trial, Label/40_0)\",\n", + " \"41.0\": \"(Label/trial, Label/41_0)\",\n", + " \"42.0\": \"(Label/trial, Label/42_0)\",\n", + " \"43.0\": \"(Label/trial, Label/43_0)\",\n", + " \"44.0\": \"(Label/trial, Label/44_0)\",\n", + " \"45.0\": \"(Label/trial, Label/45_0)\",\n", + " \"46.0\": \"(Label/trial, Label/46_0)\",\n", + " \"47.0\": \"(Label/trial, Label/47_0)\",\n", + " \"48.0\": \"(Label/trial, Label/48_0)\",\n", + " \"49.0\": \"(Label/trial, Label/49_0)\",\n", + " \"5.0\": \"(Label/trial, Label/5_0)\",\n", + " \"50.0\": \"(Label/trial, Label/50_0)\",\n", + " \"51.0\": \"(Label/trial, Label/51_0)\",\n", + " \"52.0\": \"(Label/trial, Label/52_0)\",\n", + " \"53.0\": \"(Label/trial, Label/53_0)\",\n", + " \"54.0\": \"(Label/trial, Label/54_0)\",\n", + " \"55.0\": \"(Label/trial, Label/55_0)\",\n", + " \"56.0\": \"(Label/trial, Label/56_0)\",\n", + " \"57.0\": \"(Label/trial, Label/57_0)\",\n", + " \"6.0\": \"(Label/trial, Label/6_0)\",\n", + " \"7.0\": \"(Label/trial, Label/7_0)\",\n", + " \"8.0\": \"(Label/trial, Label/8_0)\",\n", + " \"9.0\": \"(Label/trial, Label/9_0)\",\n", + " \"nan\": \"(Label/trial, Label/nan)\"\n", + " },\n", + " \"Levels\": {\n", + " \"1.0\": \"Here describe column value 1.0 of column trial\",\n", + " \"10.0\": \"Here describe column value 10.0 of column trial\",\n", + " \"11.0\": \"Here describe column value 11.0 of column trial\",\n", + " \"12.0\": \"Here describe column value 12.0 of column trial\",\n", + " \"13.0\": \"Here describe column value 13.0 of column trial\",\n", + " \"14.0\": \"Here describe column value 14.0 of column trial\",\n", + " \"15.0\": \"Here describe column value 15.0 of column trial\",\n", + " \"16.0\": \"Here describe column value 16.0 of column trial\",\n", + " \"17.0\": \"Here describe column value 17.0 of column trial\",\n", + " \"18.0\": \"Here describe column value 18.0 of column trial\",\n", + " \"19.0\": \"Here describe column value 19.0 of column trial\",\n", + " \"2.0\": \"Here describe column value 2.0 of column trial\",\n", + " \"20.0\": \"Here describe column value 20.0 of column trial\",\n", + " \"21.0\": \"Here describe column value 21.0 of column trial\",\n", + " \"22.0\": \"Here describe column value 22.0 of column trial\",\n", + " \"23.0\": \"Here describe column value 23.0 of column trial\",\n", + " \"24.0\": \"Here describe column value 24.0 of column trial\",\n", + " \"25.0\": \"Here describe column value 25.0 of column trial\",\n", + " \"26.0\": \"Here describe column value 26.0 of column trial\",\n", + " \"27.0\": \"Here describe column value 27.0 of column trial\",\n", + " \"28.0\": \"Here describe column value 28.0 of column trial\",\n", + " \"29.0\": \"Here describe column value 29.0 of column trial\",\n", + " \"3.0\": \"Here describe column value 3.0 of column trial\",\n", + " \"30.0\": \"Here describe column value 30.0 of column trial\",\n", + " \"31.0\": \"Here describe column value 31.0 of column trial\",\n", + " \"32.0\": \"Here describe column value 32.0 of column trial\",\n", + " \"33.0\": \"Here describe column value 33.0 of column trial\",\n", + " \"34.0\": \"Here describe column value 34.0 of column trial\",\n", + " \"35.0\": \"Here describe column value 35.0 of column trial\",\n", + " \"36.0\": \"Here describe column value 36.0 of column trial\",\n", + " \"37.0\": \"Here describe column value 37.0 of column trial\",\n", + " \"38.0\": \"Here describe column value 38.0 of column trial\",\n", + " \"39.0\": \"Here describe column value 39.0 of column trial\",\n", + " \"4.0\": \"Here describe column value 4.0 of column trial\",\n", + " \"40.0\": \"Here describe column value 40.0 of column trial\",\n", + " \"41.0\": \"Here describe column value 41.0 of column trial\",\n", + " \"42.0\": \"Here describe column value 42.0 of column trial\",\n", + " \"43.0\": \"Here describe column value 43.0 of column trial\",\n", + " \"44.0\": \"Here describe column value 44.0 of column trial\",\n", + " \"45.0\": \"Here describe column value 45.0 of column trial\",\n", + " \"46.0\": \"Here describe column value 46.0 of column trial\",\n", + " \"47.0\": \"Here describe column value 47.0 of column trial\",\n", + " \"48.0\": \"Here describe column value 48.0 of column trial\",\n", + " \"49.0\": \"Here describe column value 49.0 of column trial\",\n", + " \"5.0\": \"Here describe column value 5.0 of column trial\",\n", + " \"50.0\": \"Here describe column value 50.0 of column trial\",\n", + " \"51.0\": \"Here describe column value 51.0 of column trial\",\n", + " \"52.0\": \"Here describe column value 52.0 of column trial\",\n", + " \"53.0\": \"Here describe column value 53.0 of column trial\",\n", + " \"54.0\": \"Here describe column value 54.0 of column trial\",\n", + " \"55.0\": \"Here describe column value 55.0 of column trial\",\n", + " \"56.0\": \"Here describe column value 56.0 of column trial\",\n", + " \"57.0\": \"Here describe column value 57.0 of column trial\",\n", + " \"6.0\": \"Here describe column value 6.0 of column trial\",\n", + " \"7.0\": \"Here describe column value 7.0 of column trial\",\n", + " \"8.0\": \"Here describe column value 8.0 of column trial\",\n", + " \"9.0\": \"Here describe column value 9.0 of column trial\",\n", + " \"nan\": \"Here describe column value nan of column trial\"\n", + " }\n", + " },\n", + " \"rep_lag\": {\n", + " \"Description\": \"Description for rep_lag\",\n", + " \"HED\": {\n", + " \"1.0\": \"(Label/rep_lag, Label/1_0)\",\n", + " \"10.0\": \"(Label/rep_lag, Label/10_0)\",\n", + " \"11.0\": \"(Label/rep_lag, Label/11_0)\",\n", + " \"12.0\": \"(Label/rep_lag, Label/12_0)\",\n", + " \"13.0\": \"(Label/rep_lag, Label/13_0)\",\n", + " \"14.0\": \"(Label/rep_lag, Label/14_0)\",\n", + " \"15.0\": \"(Label/rep_lag, Label/15_0)\",\n", + " \"6.0\": \"(Label/rep_lag, Label/6_0)\",\n", + " \"7.0\": \"(Label/rep_lag, Label/7_0)\",\n", + " \"8.0\": \"(Label/rep_lag, Label/8_0)\",\n", + " \"9.0\": \"(Label/rep_lag, Label/9_0)\",\n", + " \"nan\": \"(Label/rep_lag, Label/nan)\"\n", + " },\n", + " \"Levels\": {\n", + " \"1.0\": \"Here describe column value 1.0 of column rep_lag\",\n", + " \"10.0\": \"Here describe column value 10.0 of column rep_lag\",\n", + " \"11.0\": \"Here describe column value 11.0 of column rep_lag\",\n", + " \"12.0\": \"Here describe column value 12.0 of column rep_lag\",\n", + " \"13.0\": \"Here describe column value 13.0 of column rep_lag\",\n", + " \"14.0\": \"Here describe column value 14.0 of column rep_lag\",\n", + " \"15.0\": \"Here describe column value 15.0 of column rep_lag\",\n", + " \"6.0\": \"Here describe column value 6.0 of column rep_lag\",\n", + " \"7.0\": \"Here describe column value 7.0 of column rep_lag\",\n", + " \"8.0\": \"Here describe column value 8.0 of column rep_lag\",\n", + " \"9.0\": \"Here describe column value 9.0 of column rep_lag\",\n", + " \"nan\": \"Here describe column value nan of column rep_lag\"\n", + " }\n", + " },\n", + " \"value\": {\n", + " \"Description\": \"Description for value\",\n", + " \"HED\": {\n", + " \"0\": \"(Label/value, Label/0)\",\n", + " \"1\": \"(Label/value, Label/1)\",\n", + " \"13\": \"(Label/value, Label/13)\",\n", + " \"14\": \"(Label/value, Label/14)\",\n", + " \"15\": \"(Label/value, Label/15)\",\n", + " \"17\": \"(Label/value, Label/17)\",\n", + " \"18\": \"(Label/value, Label/18)\",\n", + " \"19\": \"(Label/value, Label/19)\",\n", + " \"256\": \"(Label/value, Label/256)\",\n", + " \"3\": \"(Label/value, Label/3)\",\n", + " \"4096\": \"(Label/value, Label/4096)\",\n", + " \"4352\": \"(Label/value, Label/4352)\",\n", + " \"5\": \"(Label/value, Label/5)\",\n", + " \"6\": \"(Label/value, Label/6)\",\n", + " \"7\": \"(Label/value, Label/7)\"\n", + " },\n", + " \"Levels\": {\n", + " \"0\": \"Here describe column value 0 of column value\",\n", + " \"1\": \"Here describe column value 1 of column value\",\n", + " \"13\": \"Here describe column value 13 of column value\",\n", + " \"14\": \"Here describe column value 14 of column value\",\n", + " \"15\": \"Here describe column value 15 of column value\",\n", + " \"17\": \"Here describe column value 17 of column value\",\n", + " \"18\": \"Here describe column value 18 of column value\",\n", + " \"19\": \"Here describe column value 19 of column value\",\n", + " \"256\": \"Here describe column value 256 of column value\",\n", + " \"3\": \"Here describe column value 3 of column value\",\n", + " \"4096\": \"Here describe column value 4096 of column value\",\n", + " \"4352\": \"Here describe column value 4352 of column value\",\n", + " \"5\": \"Here describe column value 5 of column value\",\n", + " \"6\": \"Here describe column value 6 of column value\",\n", + " \"7\": \"Here describe column value 7 of column value\"\n", + " }\n", + " },\n", + " \"stim_file\": {\n", + " \"Description\": \"Description for stim_file\",\n", + " \"HED\": \"(Label/stim_file, Label/#)\"\n", + " },\n", + " \"response_time\": {\n", + " \"Description\": \"Description for response_time\",\n", + " \"HED\": \"(Label/response_time, Label/#)\"\n", + " }\n", + "}\n" + ] + } + ], "source": [ "import json\n", "from hed.tools.analysis.tabular_summary import TabularSummary\n", "from hed.tools.util.io_util import get_file_list\n", - "dataset_root = 'T:/summaryTests/ds004105-download'\n", - "# dataset_root_path = '../../../datasets/eeg_ds003645s_hed'\n", + "\n", + "dataset_root = '../../../datasets/eeg_ds003645s_hed'\n", "exclude_dirs = ['stimuli', 'code', 'derivatives', 'sourcedata', 'phenotype']\n", "skip_columns = [\"onset\", \"duration\", \"sample\"]\n", - "value_columns = []\n", + "value_columns = [\"stim_file\", \"response_time\"]\n", "output_path = None\n", "\n", "# Construct the event file dictionary for the BIDS event files\n", @@ -69,7 +322,11 @@ " print(json.dumps(sidecar_template, indent=4))" ], "metadata": { - "collapsed": false + "collapsed": false, + "ExecuteTime": { + "end_time": "2024-01-09T22:02:52.047144900Z", + "start_time": "2024-01-09T22:02:51.951144900Z" + } } } ], diff --git a/hedcode/jupyter_notebooks/bids/find_event_combinations.ipynb b/hedcode/jupyter_notebooks/bids/find_event_combinations.ipynb index 1f5cc713..6e111ccb 100644 --- a/hedcode/jupyter_notebooks/bids/find_event_combinations.ipynb +++ b/hedcode/jupyter_notebooks/bids/find_event_combinations.ipynb @@ -1,12 +1,5 @@ { "cells": [ - { - "cell_type": "markdown", - "source": [], - "metadata": { - "collapsed": false - } - }, { "cell_type": "markdown", "source": [ diff --git a/hedcode/jupyter_notebooks/bids/merge_spreadsheet_into_sidecar.ipynb b/hedcode/jupyter_notebooks/bids/merge_spreadsheet_into_sidecar.ipynb index dab052c0..e64a8f45 100644 --- a/hedcode/jupyter_notebooks/bids/merge_spreadsheet_into_sidecar.ipynb +++ b/hedcode/jupyter_notebooks/bids/merge_spreadsheet_into_sidecar.ipynb @@ -5,37 +5,24 @@ "source": [ "## Merge a HED tag spreadsheet with an existing JSON sidecar.\n", "\n", - "This notebook merges a 4-column spreadsheet into an existing BIDS JSON sidecar. This operation is used when the HED annotations are in a spreadsheet and the user wishes to incorporate the information into a BIDS JSON sidecar.\n", + "This notebook merges a 4-column spreadsheet into an existing BIDS JSON sidecar. \n", + "This operation is used when the HED annotations are in a spreadsheet and the user wishes \n", + "to incorporate the information into a BIDS JSON sidecar.\n", "\n", "The spreadsheet must have the following 4 columns: `column_name`, `column_value`, `description`, and `HED`.\n", "\n", - "Although the merge operation itself does not require any information except the spreadsheet and the sidecar, this notebook constructs a test by first extracting a JSON sidecar from the information from dataset event files and transforming it into a spreadsheet. \n", + "Although the merge operation itself does not require any information except the spreadsheet and the sidecar,\n", + "this notebook constructs a test by first converting the spreadsheet to a dictionary and then merging into\n", + "an existing dict. \n", "\n", - "To use this notebook, substitute the specifics of your BIDS\n", - "dataset for the following variables:\n", + "To use this notebook, provide a spreadsheet path and a worksheet name if applicable.\n", + "You can use either a `.tsv` or an `.xlsx` file:\n", "\n", - "| Variable | Purpose |\n", - "| -------- | ------- |\n", - "| json_sidecar_path | Full path to root directory of dataset.|\n", - "| spreadsheet_path | List of directories to exclude when constructing file lists. |\n", - "| skip_columns | List of columns in the `events.tsv` files to skip. |\n", - "| value_columns | List of columns in the `events.tsv` files to annotate as
as a whole rather than by individual column value. |\n", - "\n", - "**Note:** To actually do the merge of spreadsheet into a JSON sidecar,\n", - "you only need to have the file names of the spreadsheet and the JSON sidecar.\n", - "\n", - "For large datasets, you will want to be sure to exclude columns such as\n", - "`onset` and `sample`, since the summary produces counts of the number of times\n", - "each unique value appears somewhere in an event file.\n", - "\n", - "When run, the script extracts a JSON sidecar and converts it to a spreadsheet\n", - "for illustrating the merge. To merge, the spreadsheet is converted back and then\n", - "merged with another JSON sidecar.\n", - "\n", - "The example below uses a\n", - "[small version](https://github.com/hed-standard/hed-examples/tree/main/datasets/eeg_ds003645s_hed)\n", - "of the Wakeman-Hanson face-processing dataset available on openNeuro as\n", - "[ds003645](https://openneuro.org/datasets/ds003645/versions/2.0.0)." + "| Variable | Purpose |\n", + "|------------------|-------------------------|\n", + "| `spreadsheet_path` | Spreadsheet file path. |\n", + "| `worksheet_name` | Worksheet name or None. |\n", + "\n" ], "metadata": { "collapsed": false @@ -123,30 +110,32 @@ "source": [ "import os\n", "import json\n", + "from hed.models import SpreadsheetInput\n", "from hed.tools import df_to_hed, merge_hed_dict\n", "\n", - "# Turn the spreadsheet\n", + "# Spreadsheet input\n", "spreadsheet_path = os.path.realpath('../../../docs/source/_static/data/task-WorkingMemory_example_spreadsheet.tsv')\n", - "print(f\"{spreadsheet_path}\")\n", - "spreadsheet_sidecar = df_to_hed(spreadsheet_path, description_tag=False)\n", - "# Use an empty sidecar to merge into, but any valid sidecar will work\n", - "target_sidecar = None\n", + "filename = os.path.basename(spreadsheet_path)\n", + "worksheet_name = None\n", + "spreadsheet = SpreadsheetInput(file=spreadsheet_path, worksheet_name=worksheet_name,\n", + " tag_columns=['HED'], has_column_names=True, name=filename)\n", + "\n", "# Must convert the spreadsheet to a sidecar before merging\n", - "print(\"a\")\n", - "merge_hed_dict(target_sidecar, spreadsheet_sidecar)\n", - "print(\"b\")\n", - "merged_json = json.dumps(target_sidecar, indent=4)\n", - "print(f\"Here\")\n", + "spreadsheet_sidecar = df_to_hed(spreadsheet.dataframe, description_tag=False)\n", + "\n", + "# Use an empty dict to merge into, but any valid dict read from JSON will work\n", + "target_sidecar_dict = {}\n", + "\n", + "# Do the merge\n", + "merge_hed_dict(target_sidecar_dict, spreadsheet_sidecar)\n", + "merged_json = json.dumps(target_sidecar_dict, indent=4)\n", "print(merged_json)" ], "metadata": { "collapsed": false, - "pycharm": { - "name": "#%% Extract a JSON sidecar template from all the event files\n" - }, "ExecuteTime": { - "end_time": "2023-09-04T22:02:51.838664200Z", - "start_time": "2023-09-04T22:02:50.481664300Z" + "end_time": "2024-01-10T12:44:41.634832500Z", + "start_time": "2024-01-10T12:44:39.230433200Z" } } } diff --git a/hedcode/jupyter_notebooks/bids/sidecar_to_spreadsheet.ipynb b/hedcode/jupyter_notebooks/bids/sidecar_to_spreadsheet.ipynb index 1bea7e5a..d0737ca6 100644 --- a/hedcode/jupyter_notebooks/bids/sidecar_to_spreadsheet.ipynb +++ b/hedcode/jupyter_notebooks/bids/sidecar_to_spreadsheet.ipynb @@ -5,24 +5,17 @@ "source": [ "## Convert an existing JSON sidecar to spreadsheet format.\n", "\n", - "This notebook creates a 4-column spreadsheet (Pandas dataframe) corresponding to the HED content of a JSON sidecar. This is useful for quickly reviewing and editing HED annotations.\n", + "This notebook creates a 4-column spreadsheet (Pandas dataframe) corresponding to the HED content of a JSON sidecar.\n", + "This is useful for quickly reviewing and editing HED annotations.\n", "\n", - "You can easily merge the edited information back into the spreadsheet. Here is an example of the spreadsheet that is produced.\n", + "You can easily merge the edited information back into the spreadsheet. \n", "\n", - "| **column_name** | **column_value** | **description** | **HED** |\n", - "| --------------- | ---------------- | --------------- | ------- |\n", - "| event_type | setup_right_sym | Description for setup_right_sym | Label/setup_right_sym |\n", - "| event_type | show_face | Description for show_face | Label/show_face |\n", - "| event_type | left_press | Description for left_press | Label/left_press |\n", - "| event_type | show_circle | Description for show_circle | Label/show_circle |\n", - "| stim_file | n/a | Description for stim_file | Label/# |\n", + "| Variable | Purpose |\n", + "| -------- | ------- |\n", + "| `json_path` | Path of the JSON sidecar file to be converted to 4-column spreadsheet. |\n", + "| `spreadsheet_path` | Path to save the resulting 4-column tsv file. |\n", "\n", - "To use this notebook, you will need to provide the path to the JSON sidecar and a path to save the spreadsheet if you want to save it. If you don't wish to save the spreadsheet, assign `spreadsheet_filename` to be None.\n", - "\n", - "The example below uses a\n", - "[small version](https://github.com/hed-standard/hed-examples/tree/main/datasets/eeg_ds003645s_hed)\n", - "of the Wakeman-Hanson face-processing dataset available on openNeuro as\n", - "[ds003645](https://openneuro.org/datasets/ds003645/versions/2.0.0)." + "To use this notebook, you will need to provide the path to the JSON sidecar and a path to save the spreadsheet if you want to save it. If you don't wish to save the spreadsheet, assign `spreadsheet_filename` to be None.\n" ], "metadata": { "collapsed": false @@ -60,8 +53,8 @@ "name": "#%% Create a spreadsheet corresponding to a JSON sidecar and save it.\n" }, "ExecuteTime": { - "end_time": "2023-09-03T19:54:44.332067400Z", - "start_time": "2023-09-03T19:54:43.209564600Z" + "end_time": "2024-01-09T23:04:15.357250800Z", + "start_time": "2024-01-09T23:04:13.896251Z" } } } diff --git a/hedcode/jupyter_notebooks/bids/summarize_events.ipynb b/hedcode/jupyter_notebooks/bids/summarize_events.ipynb index 68bedd3b..e636b3fb 100644 --- a/hedcode/jupyter_notebooks/bids/summarize_events.ipynb +++ b/hedcode/jupyter_notebooks/bids/summarize_events.ipynb @@ -130,8 +130,8 @@ "metadata": { "collapsed": false, "ExecuteTime": { - "end_time": "2023-09-03T20:08:34.676144100Z", - "start_time": "2023-09-03T20:08:33.324118600Z" + "end_time": "2024-01-09T23:05:04.716711Z", + "start_time": "2024-01-09T23:05:03.264975300Z" } } } diff --git a/hedcode/jupyter_notebooks/bids/validate_bids_dataset.ipynb b/hedcode/jupyter_notebooks/bids/validate_bids_dataset.ipynb index e700a970..42238ed9 100644 --- a/hedcode/jupyter_notebooks/bids/validate_bids_dataset.ipynb +++ b/hedcode/jupyter_notebooks/bids/validate_bids_dataset.ipynb @@ -29,35 +29,15 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": 1, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "Using HEDTOOLS version: {'date': '2023-11-11T14:14:45-0600', 'dirty': True, 'error': None, 'full-revisionid': '35e3f997c4a7de7fbd79bf9dc9906a6a1bb92ea4', 'version': '0.4.0+8.g35e3f99.dirty'}\n", - "HED Examples version: {'version': '0.2.0+197.g3c5c8e7.dirty', 'full-revisionid': '3c5c8e76850d488544d5ff8dfb37720c0bf09f51', 'dirty': True, 'error': None, 'date': '2023-12-29T10:25:39-0600'}\n", - "HED validation errors: \n", - "\n", - "Errors in file 'sub-002_task-FacePerception_run-1_events.tsv'\n", - "\tHED_UNKNOWN_COLUMN: (Warning) Column named 'sample' found in file, but not specified as a tag column or identified in sidecars.\n", - "\n", - "Errors in file 'sub-002_task-FacePerception_run-2_events.tsv'\n", - "\tHED_UNKNOWN_COLUMN: (Warning) Column named 'sample' found in file, but not specified as a tag column or identified in sidecars.\n", - "\n", - "Errors in file 'sub-002_task-FacePerception_run-3_events.tsv'\n", - "\tHED_UNKNOWN_COLUMN: (Warning) Column named 'sample' found in file, but not specified as a tag column or identified in sidecars.\n", - "\n", - "Errors in file 'sub-003_task-FacePerception_run-1_events.tsv'\n", - "\tHED_UNKNOWN_COLUMN: (Warning) Column named 'sample' found in file, but not specified as a tag column or identified in sidecars.\n", - "\n", - "Errors in file 'sub-003_task-FacePerception_run-2_events.tsv'\n", - "\tHED_UNKNOWN_COLUMN: (Warning) Column named 'sample' found in file, but not specified as a tag column or identified in sidecars.\n", - "\n", - "Errors in file 'sub-003_task-FacePerception_run-3_events.tsv'\n", - "\tHED_UNKNOWN_COLUMN: (Warning) Column named 'sample' found in file, but not specified as a tag column or identified in sidecars.\n", - "\n", - "1176\n" + "Using HEDTOOLS version: {'date': '2024-01-09T12:19:44-0600', 'dirty': True, 'error': None, 'full-revisionid': 'c97acf6bad8e2b7e4a415855bef8d001d527b115', 'version': '0.4.0+101.gc97acf6.dirty'}\n", + "HED Examples version: {'version': '0.2.0+208.g893db71.dirty', 'full-revisionid': '893db711d4ee88f7982732d875a2dd0962bd07a6', 'dirty': True, 'error': None, 'date': '2024-01-08T15:42:51-0600'}\n", + "24\n" ] } ], @@ -72,11 +52,7 @@ "\n", "## Set the dataset location and the check_for_warnings flag\n", "check_for_warnings = True\n", - "#dataset_dir = '../../../datasets/eeg_ds004105s_hed'\n", - "#dataset_dir = '../../../datasets/fmri_ds002790s_hed_aomic'\n", - "dataset_dir = '../../../datasets/fmri_soccer21s_hed'\n", - "dataset_dir = '../../../datasets/eeg_rsvp_base_hed'\n", - "dataset_dir = 'T:/summaryTests/ds004350-download'\n", + "dataset_dir = '../../../datasets/eeg_ds004105s_hed'\n", "outfile = 'temp.txt'\n", "\n", "## Validate the dataset\n", @@ -95,8 +71,8 @@ "metadata": { "collapsed": false, "ExecuteTime": { - "end_time": "2023-12-29T16:35:27.373173700Z", - "start_time": "2023-12-29T16:35:23.910175800Z" + "end_time": "2024-01-09T23:06:16.289588200Z", + "start_time": "2024-01-09T23:06:04.279482100Z" } } } diff --git a/hedcode/jupyter_notebooks/bids/validate_bids_dataset_with_libraries.ipynb b/hedcode/jupyter_notebooks/bids/validate_bids_dataset_with_libraries.ipynb index b756ccc0..eab96569 100644 --- a/hedcode/jupyter_notebooks/bids/validate_bids_dataset_with_libraries.ipynb +++ b/hedcode/jupyter_notebooks/bids/validate_bids_dataset_with_libraries.ipynb @@ -92,8 +92,8 @@ "metadata": { "collapsed": false, "ExecuteTime": { - "end_time": "2023-09-03T20:19:25.992549Z", - "start_time": "2023-09-03T20:19:21.730679400Z" + "end_time": "2024-01-09T23:06:55.321821500Z", + "start_time": "2024-01-09T23:06:46.320753600Z" } } }, diff --git a/hedcode/jupyter_notebooks/bids/validate_bids_datasets.ipynb b/hedcode/jupyter_notebooks/bids/validate_bids_datasets.ipynb index cfab292d..1098aeae 100644 --- a/hedcode/jupyter_notebooks/bids/validate_bids_datasets.ipynb +++ b/hedcode/jupyter_notebooks/bids/validate_bids_datasets.ipynb @@ -30,59 +30,8 @@ }, { "cell_type": "code", - "execution_count": 3, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Using HEDTOOLS version: {'date': '2023-11-11T14:14:45-0600', 'dirty': True, 'error': None, 'full-revisionid': '35e3f997c4a7de7fbd79bf9dc9906a6a1bb92ea4', 'version': '0.4.0+8.g35e3f99.dirty'}\n", - "HED Examples version: {'version': '0.2.0+185.ga8f1b07.dirty', 'full-revisionid': 'a8f1b075c2bb6d105a238140a0ca2da9314ae80d', 'dirty': True, 'error': None, 'date': '2023-10-27T17:09:42-0500'}\n", - "\n", - "Validating eeg_ds002893s_hed_attention_shift\n", - "No HED validation errors\n", - "\n", - "Validating eeg_ds003645s_hed\n", - "No HED validation errors\n", - "\n", - "Validating eeg_ds003645s_hed_column\n", - "No HED validation errors\n", - "\n", - "Validating eeg_ds003645s_hed_curly\n", - "No HED validation errors\n", - "\n", - "Validating eeg_ds003645s_hed_inheritance\n", - "No HED validation errors\n", - "\n", - "Validating eeg_ds003645s_hed_library\n", - "No HED validation errors\n", - "\n", - "Validating eeg_ds003645s_hed_longform\n", - "No HED validation errors\n", - "\n", - "Validating eeg_ds003645s_hed_partnered\n", - "No HED validation errors\n", - "\n", - "Validating eeg_ds003645s_hed_remodel\n", - "No HED validation errors\n", - "\n", - "Validating eeg_ds004105s_hed\n", - "No HED validation errors\n", - "\n", - "Validating eeg_ds004106s_hed\n", - "No HED validation errors\n", - "\n", - "Validating eeg_ds004117s_hed_sternberg\n", - "No HED validation errors\n", - "\n", - "Validating fmri_ds002790s_hed_aomic\n", - "No HED validation errors\n", - "\n", - "Validating fmri_soccer21s_hed\n", - "No HED validation errors\n" - ] - } - ], + "execution_count": null, + "outputs": [], "source": [ "import os\n", "from hed.errors import get_printable_issue_string\n", @@ -98,11 +47,8 @@ "check_for_warnings = False\n", "bids_datasets = ['eeg_ds002893s_hed_attention_shift',\n", " 'eeg_ds003645s_hed', \n", - " 'eeg_ds003645s_hed_column',\n", - " 'eeg_ds003645s_hed_curly',\n", - " 'eeg_ds003645s_hed_inheritance', \n", + " 'eeg_ds003645s_hed_demo',\n", " 'eeg_ds003645s_hed_library', \n", - " 'eeg_ds003645s_hed_longform',\n", " 'eeg_ds003645s_hed_partnered',\n", " 'eeg_ds003645s_hed_remodel',\n", " 'eeg_ds004105s_hed',\n", @@ -126,14 +72,7 @@ " print(issue_str)" ], "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%%\n" - }, - "ExecuteTime": { - "end_time": "2023-11-15T17:26:58.450442100Z", - "start_time": "2023-11-15T17:26:04.407045600Z" - } + "collapsed": false } } ], diff --git a/hedcode/jupyter_notebooks/remodeling/run_remodel.ipynb b/hedcode/jupyter_notebooks/remodeling/run_remodel.ipynb index d02dc5f0..86db2f5b 100644 --- a/hedcode/jupyter_notebooks/remodeling/run_remodel.ipynb +++ b/hedcode/jupyter_notebooks/remodeling/run_remodel.ipynb @@ -30,84 +30,13 @@ }, { "cell_type": "code", - "execution_count": 1, + "execution_count": 2, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "Data directory: \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\n", - "Model path: \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\summarize_validate_rmdl.json\n", - "Successfully parsed BIDS dataset with HED schema ['\"8.0.0\"']\n", - "Processing \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-01\\ses-01\\eeg\\sub-01_ses-01_task-DriveRandomSound_run-1_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-01\\ses-01\\eeg\\sub-01_ses-01_task-DriveRandomSound_run-1_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-01\\ses-01\\eeg\\sub-01_ses-01_task-DriveRandomSound_run-2_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-01\\ses-01\\eeg\\sub-01_ses-01_task-DriveRandomSound_run-2_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-02\\ses-01\\eeg\\sub-02_ses-01_task-DriveRandomSound_run-1_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-02\\ses-01\\eeg\\sub-02_ses-01_task-DriveRandomSound_run-1_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-02\\ses-01\\eeg\\sub-02_ses-01_task-DriveRandomSound_run-2_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-02\\ses-01\\eeg\\sub-02_ses-01_task-DriveRandomSound_run-2_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-03\\ses-01\\eeg\\sub-03_ses-01_task-DriveRandomSound_run-1_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-03\\ses-01\\eeg\\sub-03_ses-01_task-DriveRandomSound_run-1_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-03\\ses-01\\eeg\\sub-03_ses-01_task-DriveRandomSound_run-2_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-03\\ses-01\\eeg\\sub-03_ses-01_task-DriveRandomSound_run-2_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-04\\ses-01\\eeg\\sub-04_ses-01_task-DriveRandomSound_run-1_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-04\\ses-01\\eeg\\sub-04_ses-01_task-DriveRandomSound_run-1_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-04\\ses-01\\eeg\\sub-04_ses-01_task-DriveRandomSound_run-2_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-04\\ses-01\\eeg\\sub-04_ses-01_task-DriveRandomSound_run-2_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-05\\ses-01\\eeg\\sub-05_ses-01_task-DriveRandomSound_run-1_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-05\\ses-01\\eeg\\sub-05_ses-01_task-DriveRandomSound_run-1_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-05\\ses-01\\eeg\\sub-05_ses-01_task-DriveRandomSound_run-2_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-05\\ses-01\\eeg\\sub-05_ses-01_task-DriveRandomSound_run-2_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-06\\ses-01\\eeg\\sub-06_ses-01_task-DriveRandomSound_run-1_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-06\\ses-01\\eeg\\sub-06_ses-01_task-DriveRandomSound_run-1_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-06\\ses-01\\eeg\\sub-06_ses-01_task-DriveRandomSound_run-2_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-06\\ses-01\\eeg\\sub-06_ses-01_task-DriveRandomSound_run-2_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-07\\ses-01\\eeg\\sub-07_ses-01_task-DriveRandomSound_run-1_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-07\\ses-01\\eeg\\sub-07_ses-01_task-DriveRandomSound_run-1_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-07\\ses-01\\eeg\\sub-07_ses-01_task-DriveRandomSound_run-2_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-07\\ses-01\\eeg\\sub-07_ses-01_task-DriveRandomSound_run-2_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-08\\ses-01\\eeg\\sub-08_ses-01_task-DriveRandomSound_run-1_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-08\\ses-01\\eeg\\sub-08_ses-01_task-DriveRandomSound_run-1_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-08\\ses-01\\eeg\\sub-08_ses-01_task-DriveRandomSound_run-2_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-08\\ses-01\\eeg\\sub-08_ses-01_task-DriveRandomSound_run-2_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-09\\ses-01\\eeg\\sub-09_ses-01_task-DriveRandomSound_run-1_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-09\\ses-01\\eeg\\sub-09_ses-01_task-DriveRandomSound_run-1_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-09\\ses-01\\eeg\\sub-09_ses-01_task-DriveRandomSound_run-2_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-09\\ses-01\\eeg\\sub-09_ses-01_task-DriveRandomSound_run-2_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-10\\ses-01\\eeg\\sub-10_ses-01_task-DriveRandomSound_run-1_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-10\\ses-01\\eeg\\sub-10_ses-01_task-DriveRandomSound_run-1_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-10\\ses-01\\eeg\\sub-10_ses-01_task-DriveRandomSound_run-2_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-10\\ses-01\\eeg\\sub-10_ses-01_task-DriveRandomSound_run-2_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-11\\ses-01\\eeg\\sub-11_ses-01_task-DriveRandomSound_run-1_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-11\\ses-01\\eeg\\sub-11_ses-01_task-DriveRandomSound_run-1_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-11\\ses-01\\eeg\\sub-11_ses-01_task-DriveRandomSound_run-2_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-11\\ses-01\\eeg\\sub-11_ses-01_task-DriveRandomSound_run-2_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-12\\ses-01\\eeg\\sub-12_ses-01_task-DriveRandomSound_run-1_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-12\\ses-01\\eeg\\sub-12_ses-01_task-DriveRandomSound_run-1_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-12\\ses-01\\eeg\\sub-12_ses-01_task-DriveRandomSound_run-2_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-12\\ses-01\\eeg\\sub-12_ses-01_task-DriveRandomSound_run-2_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-13\\ses-01\\eeg\\sub-13_ses-01_task-DriveRandomSound_run-1_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-13\\ses-01\\eeg\\sub-13_ses-01_task-DriveRandomSound_run-1_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-13\\ses-01\\eeg\\sub-13_ses-01_task-DriveRandomSound_run-2_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-13\\ses-01\\eeg\\sub-13_ses-01_task-DriveRandomSound_run-2_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-14\\ses-01\\eeg\\sub-14_ses-01_task-DriveRandomSound_run-1_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-14\\ses-01\\eeg\\sub-14_ses-01_task-DriveRandomSound_run-1_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-14\\ses-01\\eeg\\sub-14_ses-01_task-DriveRandomSound_run-2_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-14\\ses-01\\eeg\\sub-14_ses-01_task-DriveRandomSound_run-2_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-15\\ses-01\\eeg\\sub-15_ses-01_task-DriveRandomSound_run-1_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-15\\ses-01\\eeg\\sub-15_ses-01_task-DriveRandomSound_run-1_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-15\\ses-01\\eeg\\sub-15_ses-01_task-DriveRandomSound_run-2_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-15\\ses-01\\eeg\\sub-15_ses-01_task-DriveRandomSound_run-2_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-16\\ses-01\\eeg\\sub-16_ses-01_task-DriveRandomSound_run-1_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-16\\ses-01\\eeg\\sub-16_ses-01_task-DriveRandomSound_run-1_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-16\\ses-01\\eeg\\sub-16_ses-01_task-DriveRandomSound_run-2_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-16\\ses-01\\eeg\\sub-16_ses-01_task-DriveRandomSound_run-2_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-17\\ses-01\\eeg\\sub-17_ses-01_task-DriveRandomSound_run-1_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-17\\ses-01\\eeg\\sub-17_ses-01_task-DriveRandomSound_run-1_events.tsv...\n", - "Tabular file \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-17\\ses-01\\eeg\\sub-17_ses-01_task-DriveRandomSound_run-2_events.tsv sidecar \n", - "Reading \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-17\\ses-01\\eeg\\sub-17_ses-01_task-DriveRandomSound_run-2_events.tsv...\n" + "Results will be found in derivatives/remodel/summaries relative to data_root\n" ] } ], @@ -116,11 +45,13 @@ "import shutil\n", "import hed.tools.remodeling.cli.run_remodel as cli_remodel\n", "\n", - "data_root = 't:/summaryTests/ds004105-download'\n", - "model_path = os.path.realpath(os.path.join(data_root, 'derivatives/remodel/summarize_validate_rmdl.json'))\n", + "data_root = '../../../datasets/eeg_ds003645s_hed_remodel'\n", + "model_relative = 'derivatives/remodel/remodeling_files/summarize_columns_rmdl.json'\n", + "model_path = os.path.realpath(os.path.join(data_root, model_relative))\n", "arg_list = [data_root, model_path, '-b', '-nb', '-x', 'derivatives', 'stimuli', 'sourcedata', 'code',\n", - " '-f', 'events', '-e', '.tsv', '-i', 'consolidated', '-v']\n", - "cli_remodel.main(arg_list)\n" + " '-f', 'events', '-e', '.tsv', '-i', 'consolidated']\n", + "cli_remodel.main(arg_list)\n", + "print(\"Results will be found in derivatives/remodel/summaries relative to data_root\")" ], "metadata": { "collapsed": false, @@ -128,21 +59,21 @@ "name": "#%% This removes all summaries from eeg_ds003645s_hed_remodel and then reruns.\n" }, "ExecuteTime": { - "end_time": "2023-10-22T21:36:00.919686Z", - "start_time": "2023-10-22T21:34:56.555799500Z" + "end_time": "2024-01-10T13:02:54.499667Z", + "start_time": "2024-01-10T13:02:54.303667100Z" } } }, { "cell_type": "code", - "execution_count": 1, + "execution_count": 2, "outputs": [], "source": [], "metadata": { "collapsed": false, "ExecuteTime": { - "end_time": "2023-10-22T21:36:00.937688400Z", - "start_time": "2023-10-22T21:36:00.921685100Z" + "end_time": "2024-01-10T13:02:54.514672400Z", + "start_time": "2024-01-10T13:02:54.501668400Z" } } } diff --git a/hedcode/jupyter_notebooks/remodeling/run_remodel_backup.ipynb b/hedcode/jupyter_notebooks/remodeling/run_remodel_backup.ipynb index 94acca26..ba553c34 100644 --- a/hedcode/jupyter_notebooks/remodeling/run_remodel_backup.ipynb +++ b/hedcode/jupyter_notebooks/remodeling/run_remodel_backup.ipynb @@ -31,41 +31,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "Creating backup test_backup\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-01\\ses-01\\eeg\\sub-01_ses-01_task-DriveRandomSound_run-1_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-01\\ses-01\\eeg\\sub-01_ses-01_task-DriveRandomSound_run-1_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-01\\ses-01\\eeg\\sub-01_ses-01_task-DriveRandomSound_run-2_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-01\\ses-01\\eeg\\sub-01_ses-01_task-DriveRandomSound_run-2_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-02\\ses-01\\eeg\\sub-02_ses-01_task-DriveRandomSound_run-1_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-02\\ses-01\\eeg\\sub-02_ses-01_task-DriveRandomSound_run-1_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-02\\ses-01\\eeg\\sub-02_ses-01_task-DriveRandomSound_run-2_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-02\\ses-01\\eeg\\sub-02_ses-01_task-DriveRandomSound_run-2_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-03\\ses-01\\eeg\\sub-03_ses-01_task-DriveRandomSound_run-1_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-03\\ses-01\\eeg\\sub-03_ses-01_task-DriveRandomSound_run-1_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-03\\ses-01\\eeg\\sub-03_ses-01_task-DriveRandomSound_run-2_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-03\\ses-01\\eeg\\sub-03_ses-01_task-DriveRandomSound_run-2_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-04\\ses-01\\eeg\\sub-04_ses-01_task-DriveRandomSound_run-1_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-04\\ses-01\\eeg\\sub-04_ses-01_task-DriveRandomSound_run-1_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-04\\ses-01\\eeg\\sub-04_ses-01_task-DriveRandomSound_run-2_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-04\\ses-01\\eeg\\sub-04_ses-01_task-DriveRandomSound_run-2_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-05\\ses-01\\eeg\\sub-05_ses-01_task-DriveRandomSound_run-1_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-05\\ses-01\\eeg\\sub-05_ses-01_task-DriveRandomSound_run-1_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-05\\ses-01\\eeg\\sub-05_ses-01_task-DriveRandomSound_run-2_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-05\\ses-01\\eeg\\sub-05_ses-01_task-DriveRandomSound_run-2_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-06\\ses-01\\eeg\\sub-06_ses-01_task-DriveRandomSound_run-1_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-06\\ses-01\\eeg\\sub-06_ses-01_task-DriveRandomSound_run-1_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-06\\ses-01\\eeg\\sub-06_ses-01_task-DriveRandomSound_run-2_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-06\\ses-01\\eeg\\sub-06_ses-01_task-DriveRandomSound_run-2_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-07\\ses-01\\eeg\\sub-07_ses-01_task-DriveRandomSound_run-1_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-07\\ses-01\\eeg\\sub-07_ses-01_task-DriveRandomSound_run-1_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-07\\ses-01\\eeg\\sub-07_ses-01_task-DriveRandomSound_run-2_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-07\\ses-01\\eeg\\sub-07_ses-01_task-DriveRandomSound_run-2_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-08\\ses-01\\eeg\\sub-08_ses-01_task-DriveRandomSound_run-1_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-08\\ses-01\\eeg\\sub-08_ses-01_task-DriveRandomSound_run-1_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-08\\ses-01\\eeg\\sub-08_ses-01_task-DriveRandomSound_run-2_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-08\\ses-01\\eeg\\sub-08_ses-01_task-DriveRandomSound_run-2_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-09\\ses-01\\eeg\\sub-09_ses-01_task-DriveRandomSound_run-1_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-09\\ses-01\\eeg\\sub-09_ses-01_task-DriveRandomSound_run-1_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-09\\ses-01\\eeg\\sub-09_ses-01_task-DriveRandomSound_run-2_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-09\\ses-01\\eeg\\sub-09_ses-01_task-DriveRandomSound_run-2_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-10\\ses-01\\eeg\\sub-10_ses-01_task-DriveRandomSound_run-1_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-10\\ses-01\\eeg\\sub-10_ses-01_task-DriveRandomSound_run-1_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-10\\ses-01\\eeg\\sub-10_ses-01_task-DriveRandomSound_run-2_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-10\\ses-01\\eeg\\sub-10_ses-01_task-DriveRandomSound_run-2_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-11\\ses-01\\eeg\\sub-11_ses-01_task-DriveRandomSound_run-1_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-11\\ses-01\\eeg\\sub-11_ses-01_task-DriveRandomSound_run-1_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-11\\ses-01\\eeg\\sub-11_ses-01_task-DriveRandomSound_run-2_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-11\\ses-01\\eeg\\sub-11_ses-01_task-DriveRandomSound_run-2_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-12\\ses-01\\eeg\\sub-12_ses-01_task-DriveRandomSound_run-1_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-12\\ses-01\\eeg\\sub-12_ses-01_task-DriveRandomSound_run-1_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-12\\ses-01\\eeg\\sub-12_ses-01_task-DriveRandomSound_run-2_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-12\\ses-01\\eeg\\sub-12_ses-01_task-DriveRandomSound_run-2_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-13\\ses-01\\eeg\\sub-13_ses-01_task-DriveRandomSound_run-1_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-13\\ses-01\\eeg\\sub-13_ses-01_task-DriveRandomSound_run-1_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-13\\ses-01\\eeg\\sub-13_ses-01_task-DriveRandomSound_run-2_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-13\\ses-01\\eeg\\sub-13_ses-01_task-DriveRandomSound_run-2_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-14\\ses-01\\eeg\\sub-14_ses-01_task-DriveRandomSound_run-1_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-14\\ses-01\\eeg\\sub-14_ses-01_task-DriveRandomSound_run-1_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-14\\ses-01\\eeg\\sub-14_ses-01_task-DriveRandomSound_run-2_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-14\\ses-01\\eeg\\sub-14_ses-01_task-DriveRandomSound_run-2_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-15\\ses-01\\eeg\\sub-15_ses-01_task-DriveRandomSound_run-1_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-15\\ses-01\\eeg\\sub-15_ses-01_task-DriveRandomSound_run-1_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-15\\ses-01\\eeg\\sub-15_ses-01_task-DriveRandomSound_run-2_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-15\\ses-01\\eeg\\sub-15_ses-01_task-DriveRandomSound_run-2_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-16\\ses-01\\eeg\\sub-16_ses-01_task-DriveRandomSound_run-1_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-16\\ses-01\\eeg\\sub-16_ses-01_task-DriveRandomSound_run-1_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-16\\ses-01\\eeg\\sub-16_ses-01_task-DriveRandomSound_run-2_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-16\\ses-01\\eeg\\sub-16_ses-01_task-DriveRandomSound_run-2_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-17\\ses-01\\eeg\\sub-17_ses-01_task-DriveRandomSound_run-1_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-17\\ses-01\\eeg\\sub-17_ses-01_task-DriveRandomSound_run-1_events.tsv\n", - "Copying \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\sub-17\\ses-01\\eeg\\sub-17_ses-01_task-DriveRandomSound_run-2_events.tsv to \\\\192.168.0.179\\NASdata4\\summaryTests\\ds004105-download\\derivatives\\remodel\\backups\\test_backup\\backup_root\\sub-17\\ses-01\\eeg\\sub-17_ses-01_task-DriveRandomSound_run-2_events.tsv\n" + "Results will be found in derivatives/remodel/backups/test_backup relative to data_root\n" ] } ], @@ -73,12 +39,12 @@ "import os\n", "import hed.tools.remodeling.cli.run_remodel_backup as cli_backup\n", "\n", - "#data_root = os.path.realpath('../../../datasets/eeg_ds003645s_hed_remodel')\n", - "data_root = 't:/summaryTests/ds004105-download'\n", + "data_root = os.path.realpath('../../../datasets/eeg_ds003645s_hed_remodel')\n", "backup_name = 'test_backup'\n", "arg_list = [data_root, '-bn', backup_name, '-x', 'derivatives', 'stimuli', 'code', 'sourcedata'\n", - " '-f', 'events', '-e', '.tsv', '-v']\n", - "cli_backup.main(arg_list)\n" + " '-f', 'events', '-e', '.tsv']\n", + "cli_backup.main(arg_list)\n", + "print(\"Results will be found in derivatives/remodel/backups/test_backup relative to data_root\")" ], "metadata": { "collapsed": false, @@ -86,8 +52,8 @@ "name": "#%%\n" }, "ExecuteTime": { - "end_time": "2023-10-22T21:27:19.165151200Z", - "start_time": "2023-10-22T21:27:17.679498700Z" + "end_time": "2024-01-10T13:08:07.582640300Z", + "start_time": "2024-01-10T13:08:07.530641100Z" } } } diff --git a/hedcode/jupyter_notebooks/remodeling/run_remodel_restore.ipynb b/hedcode/jupyter_notebooks/remodeling/run_remodel_restore.ipynb index 0b08e31d..0342fc00 100644 --- a/hedcode/jupyter_notebooks/remodeling/run_remodel_restore.ipynb +++ b/hedcode/jupyter_notebooks/remodeling/run_remodel_restore.ipynb @@ -29,7 +29,7 @@ "import os\n", "import hed.tools.remodeling.cli.run_remodel_restore as cli_restore\n", "\n", - "backup_name = 'test_backup'\n", + "backup_name = 'default_backup'\n", "data_dir = os.path.realpath('../../../datasets/eeg_ds003645s_hed_remodel')\n", "arg_list = [data_dir, '-bn', backup_name]\n", "cli_restore.main(arg_list)" diff --git a/hedcode/jupyter_notebooks/utilities/README.md b/hedcode/jupyter_notebooks/utilities/README.md deleted file mode 100644 index e8199f06..00000000 --- a/hedcode/jupyter_notebooks/utilities/README.md +++ /dev/null @@ -1,3 +0,0 @@ -## Miscellaneous utilities - -These utilities may need to be refactored to be used with the latest versions of the HEDTools. \ No newline at end of file diff --git a/hedcode/jupyter_notebooks/utilities/generate_hed_column_test_data.ipynb b/hedcode/jupyter_notebooks/utilities/generate_hed_column_test_data.ipynb deleted file mode 100644 index d0810e0a..00000000 --- a/hedcode/jupyter_notebooks/utilities/generate_hed_column_test_data.ipynb +++ /dev/null @@ -1,70 +0,0 @@ -{ - "cells": [ - { - "cell_type": "markdown", - "source": [ - "## Produce the sample dataset with a HED column.\n" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% md\n" - } - } - }, - { - "cell_type": "code", - "execution_count": 1, - "outputs": [], - "source": [ - "import os\n", - "from hed.models import TabularInput, Sidecar\n", - "from hed.schema import load_schema_version\n", - "from hed.tools import assemble_hed, get_file_list\n", - "\n", - "# Variables to set for the specific dataset\n", - "bids_root_path = os.path.realpath('../../../datasets/eeg_ds003645s_hed_column')\n", - "exclude_dirs = ['sourcedata', 'stimuli', 'code']\n", - "entities = ('sub', 'run')\n", - "hed_version = '8.0.0'\n", - "# Construct the event file dictionaries for the EEG.event files\n", - "event_files = get_file_list(bids_root_path, extensions=[\".tsv\"], name_suffix=\"_events\", exclude_dirs=exclude_dirs)\n", - "json_files = get_file_list(bids_root_path, extensions=[\".json\"], name_suffix=\"_events\", exclude_dirs=exclude_dirs)\n", - "hed_schema = load_schema_version(xml_version=hed_version)\n", - "sidecar = Sidecar(json_files[0])\n", - "additional_cols = ['duration', 'face_type', 'rep_status']\n", - "for file in event_files:\n", - " events = TabularInput(file, sidecar=sidecar)\n", - " df, _ = assemble_hed(events, sidecar, hed_schema, columns_included=additional_cols, expand_defs=False)\n", - " df.to_csv(file, sep='\\t', index=False)" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% Run the script\n" - } - } - } - ], - "metadata": { - "kernelspec": { - "display_name": "Python 3", - "language": "python", - "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 2 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython2", - "version": "2.7.6" - } - }, - "nbformat": 4, - "nbformat_minor": 0 -} \ No newline at end of file diff --git a/hedcode/jupyter_notebooks/utilities/needs_refactoring/create_remap_template.ipynb b/hedcode/jupyter_notebooks/utilities/needs_refactoring/create_remap_template.ipynb deleted file mode 100644 index 1d51990e..00000000 --- a/hedcode/jupyter_notebooks/utilities/needs_refactoring/create_remap_template.ipynb +++ /dev/null @@ -1,295 +0,0 @@ -{ - "cells": [ - { - "cell_type": "markdown", - "metadata": { - "collapsed": true, - "pycharm": { - "name": "#%% md\n" - } - }, - "source": [ - "## Create a template for event remapping.\n", - "This notebook works through the process analyzing the contents of the event files in\n", - "a BIDS dataset and creating a template for remapping event codes. The goal of such\n", - "a remapping is to orthogonalize event design and make the meanings of contents\n", - "of the event file more clear.\n", - "\n", - "The dataset `eeg_atten_orig` contains the original encoding of the\n", - "\n", - "Suppose we want to remap each unique combination in the key columns [`value`, `trial_type`]\n", - "into a new combination in the target columns [`event_type`, `task_role`, `shift_cond`].\n", - "\n", - "**Table 1:** Sample template created from a BIDS dataset.\n", - "\n", - "| value | trial_type | event_type | task_role | shift_cond |\n", - "| ----- | ---------- | ---------- | --------- | ---------- |\n", - "| 11 | 1 | n/a | n/a | n/a |\n", - "| 31 | 1 | n/a | n/a | n/a |\n", - "| 41 | 1 | n/a | n/a | n/a |\n", - "| 42 | 2 | n/a | n/a | n/a |\n", - "| 201 | 3 | n/a | n/a | n/a |\n", - "\n", - "After creating a template file for your data, you must manually edit it\n", - "to fill in the desired mapping. Table 2 gives an example of a potential\n", - "mapping.\n", - "\n", - "**Table 2:** An excerpt of the completed template for excerpt of Table 1.\n", - "\n", - "| value | trial_type | event_type | task_role | shift_cond |\n", - "| ----- | ---------- | ------------ | ----------------- | ------------- |\n", - "| 11 | 1 | hear_cue | cue | auditory_cond |\n", - "| 31 | 1 | high_tone | target_attended | auditory_cond |\n", - "| 41 | 1 | light_bar | target_unattended | auditory_cond |\n", - "| 42 | 2 | light_bar | target_attended | visual_cond |\n", - "| 201 | 3 | button_press | target_detected | shift_cond |\n" - ] - }, - { - "cell_type": "markdown", - "source": [ - "#### Set dataset location\n", - "\n", - "The example used in this notebook is reduced version of an auditory attention shift\n", - "dataset which is available at\n", - "[https://github.com/hed-standard/hed-examples/data/eeg_ds0028932](https://github.com/hed-standard/hed-examples/data/eeg_ds0028932).\n", - "\n", - "To run this notebook, you will need download this dataset and set the `bids_root_path`\n", - "variable to the local path of the dataset's root directory.\n", - "\n", - "Alternatively, you can set `bids_root_path` to the full path of your own BIDS dataset." - ], - "metadata": { - "collapsed": false - } - }, - { - "cell_type": "code", - "execution_count": 1, - "outputs": [], - "source": [ - "bids_root_path = \"/XXX\"" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% Set the location of the dataset the dataset\n" - } - } - }, - { - "cell_type": "markdown", - "source": [ - "#### Set key and target columns\n", - "\n", - "The goal is to create a mapping of each unique combination of the key columns\n", - "to a combination of target column values.\n", - "\n", - "(You will need to set the actual target column values manually after a template\n", - "file is created.)" - ], - "metadata": { - "collapsed": false - } - }, - { - "cell_type": "code", - "source": [ - "key_columns = [\"value\", \"trial_type\"]\n", - "target_columns = [\"event_type\", \"task_role\", \"shift_cond\"]" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% Set up the variables for the dataset\n" - } - }, - "execution_count": 2, - "outputs": [] - }, - { - "cell_type": "markdown", - "source": [ - "#### Get a list of event files\n", - "\n", - "The next example recursively traverses the directory tree and produces\n", - "a list of the full paths of the dataset event files.\n", - "\n", - "Event files have extension `.tsv` and the file names end with `_events`.\n", - "You may wish to check the returned list to verify that the expected event files\n", - "are in the dataset." - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% md\n" - } - } - }, - { - "cell_type": "code", - "execution_count": 3, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Bids dataset D:/eeg_ds002893s has 6 event files\n" - ] - } - ], - "source": [ - "from hed.util import get_file_list\n", - "event_file_list = get_file_list(bids_root_path, extensions=[\".tsv\"], name_suffix=\"_events\")\n", - "print(f\"Bids dataset {bids_root_path} has {len(event_file_list)} event files\")" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% Get a list of full paths of the event files\n" - } - } - }, - { - "cell_type": "markdown", - "source": [ - "#### Find unique key column combinations\n", - "\n", - "Use the `KeyTemplate` class to find the unique value combinations of a list of columns.\n", - "\n", - "If you just want a summary of the unique values in individual columns of all\n", - "event files, use the `ColumnDict` class as illustrated in notebook\n", - "`summarize_events.ipynb`.\n" - ], - "metadata": { - "collapsed": false - } - }, - { - "cell_type": "code", - "execution_count": 4, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Counts for key [['value', 'trial_type']]:\n", - "[11, 1]\t228\n", - "[12, 1]\t228\n", - "[13, 1]\t456\n", - "[14, 1]\t456\n", - "[15, 1]\t1822\n", - "[16, 1]\t1820\n", - "[21, 2]\t252\n", - "[22, 2]\t252\n", - "[23, 2]\t505\n", - "[24, 2]\t504\n", - "[25, 2]\t2010\n", - "[26, 2]\t2012\n", - "[28, 2]\t2\n", - "[31, 3]\t720\n", - "[32, 3]\t719\n", - "[37, 3]\t960\n", - "[38, 3]\t960\n", - "[39, 3]\t480\n", - "[202, 1]\t13\n", - "[202, 2]\t17\n", - "[202, 3]\t42\n", - "[212, 2]\t3\n", - "[310, 3]\t480\n", - "[311, 3]\t3838\n", - "[312, 3]\t3832\n", - "[313, 3]\t1920\n", - "[314, 3]\t1915\n", - "[1201, 1]\t433\n", - "[2201, 2]\t502\n", - "[3201, 3]\t1846\n" - ] - } - ], - "source": [ - "from hed.tools import KeyTemplate\n", - "template = KeyTemplate(key_columns)\n", - "for file in event_file_list:\n", - " template.update(file)\n", - "template.resort()\n", - "template.print()" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% Use KeyTemplate to get the counts for each unique combination of key columns.\n" - } - } - }, - { - "cell_type": "markdown", - "source": [ - "#### Save the template for editing" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% md\n" - } - } - }, - { - "cell_type": "code", - "execution_count": 5, - "outputs": [], - "source": [ - "import os\n", - "df = template.make_template(additional_cols=target_columns)\n", - "template_file = os.path.join(bids_root_path, \"remap_event_template.tsv\")\n", - "df.to_csv(template_file, sep='\\t', index=False)" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% Create DataFrame containing a template based specified columns and values\n" - } - } - }, - { - "cell_type": "markdown", - "source": [ - "#### Manually edit template\n", - "\n", - "To do remapping, you will need to edit the `event_template.tsv` spreadsheet\n", - "created in the previous step to indicate how each combination of [`value`, `trial_type`]\n", - "is mapped into a combination of [`event_type`, `task_role`, `shift_cond`].\n", - "\n", - "Once you have filled in the mapping, you can use the `remap_events.ipynb` notebook\n", - "to remap all the event files in your BIDS dataset." - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% md\n" - } - } - } - ], - "metadata": { - "kernelspec": { - "display_name": "Python 3", - "language": "python", - "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 2 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython2", - "version": "2.7.6" - } - }, - "nbformat": 4, - "nbformat_minor": 0 -} \ No newline at end of file diff --git a/hedcode/jupyter_notebooks/utilities/needs_refactoring/remap_events.ipynb b/hedcode/jupyter_notebooks/utilities/needs_refactoring/remap_events.ipynb deleted file mode 100644 index 1abbad1b..00000000 --- a/hedcode/jupyter_notebooks/utilities/needs_refactoring/remap_events.ipynb +++ /dev/null @@ -1,268 +0,0 @@ -{ - "cells": [ - { - "cell_type": "markdown", - "metadata": { - "collapsed": true, - "pycharm": { - "name": "#%% md\n" - } - }, - "source": [ - "## Remap events.\n", - "\n", - "This notebook demonstrates how to use HED tools to remap event files. The idea of\n", - "remapping is that each unique combination of values in a set of **key** columns is\n", - "mapped into a specified combination of values in a set of **target** columns.\n", - "\n", - "Table 1 shows excerpt from a sample events file from the Sternberg dataset. We wish\n", - "to remap the codes in the `type` column to a combination of values in new columns\n", - "called `event_type`, `task_role`, and `letter` columns.\n", - "\n", - "Since the event files don't contain these columns, the mapping must insert these columns\n", - "as part of the mapping. Note the `latency` gives the sample number of the event, rather\n", - "than the offset in seconds as required by BIDS. The required `offset` and `duration`\n", - "columns would need to be inserted to make this events file BIDS-compliant.\n", - "\n", - "**Table 1:** Excerpt from a Sternberg working memory event file.\n", - "\n", - "| pres_trial | stimulus | type | latency |\n", - "| ---------- | -------- | ----- | ------- |\n", - "| 1 | Picture | nonWM | 1430 |\n", - "| 1 | Picture | gD | 2741 |\n", - "| 1 | Picture | gM | 3102 |\n", - "| 1 | Picture | gB | 3462 |\n", - "| 1 | Picture | Y | 3822 |\n", - "| 1 | Picture | gH | 4183 |\n", - "\n", - "Table 2 shows an excerpt of the mapping template which has already been created.\n", - "\n", - "**Table 2:** Excerpt of a map designed to map the `type` column into\n", - "a combination of columns `event_type`, `task_role`, and `letter`.\n", - "\n", - "| type\t | event_type | task_role | letter |\n", - "| ------- | ----------- | ---------------- | ------ |\n", - "| A\t | show_letter | target | A |\n", - "| gD | show_letter | non-target | D |\n", - "| Y | show_letter | target | E |\n", - "| rK | show_letter | probe | K |\n", - "| nonWM | show_cross | fixate | + |\n", - "| correct | sound_beep | correct_feedback | n/a |\n", - "| 1 | right_click | in_group | n/a |" - ] - }, - { - "cell_type": "markdown", - "source": [ - "#### Set dataset location\n", - "\n", - "The example used in this notebook is a Sternberg memory dataset. Some data files and\n", - "the previously created template are located in the the `data/sternberg` directory." - ], - "metadata": { - "collapsed": false - } - }, - { - "cell_type": "markdown", - "source": [ - "#### Set the data directory" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% md\n" - } - } - }, - { - "cell_type": "code", - "execution_count": 1, - "outputs": [], - "source": [ - "data_directory = \"../data/sternberg_data\"" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% Set the location of the data\n" - } - } - }, - { - "cell_type": "markdown", - "source": [ - "#### Create a `KeyMap` to do the mapping" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% md\n" - } - } - }, - { - "cell_type": "code", - "execution_count": 2, - "outputs": [], - "source": [ - "import os\n", - "from hed.tools.summaries.key_map import KeyMap\n", - "key_cols = ['type']\n", - "target_cols = ['event_type', 'task_role', 'letter']\n", - "key_map = KeyMap(key_cols, target_cols, name='sternberg_remap')\n" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%%\n" - } - } - }, - { - "cell_type": "markdown", - "source": [ - "#### Read the pre-created mapping template\n", - "\n", - "If you don't have a mapping for your data, you should use the\n", - "`create_template.ipynb` notebook first.\n", - "\n", - "The following reads the template mapping unique values of `type` to\n", - "combinations of `event_type`, `task_role`, and `letter`.\n" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% md\n" - } - } - }, - { - "cell_type": "code", - "source": [ - "template_file = os.path.join(data_directory, \"sternberg_map.tsv\")\n", - "print(f\"Template file is {template_file}\")\n", - "duplicates = key_map.update(template_file)\n", - "if duplicates:\n", - " print(f\"Warning: this mapping has {len(duplicates)} duplicate key entries\")\n" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% Load the template\n" - } - }, - "execution_count": 3, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Template file is ../data/sternberg\\sternberg_map.tsv\n" - ] - } - ] - }, - { - "cell_type": "markdown", - "source": [ - "#### Get a list of event files to be remapped\n", - "\n", - "We will remap the event files in the `data_directory` whose names start with\n", - "`sternberg` and end with `_events.tsv`.\n" - ], - "metadata": { - "collapsed": false - } - }, - { - "cell_type": "code", - "execution_count": 4, - "outputs": [], - "source": [ - "from hed.util.io_util import get_file_list\n", - "event_file_list = get_file_list(data_directory, extensions=[\".tsv\"], name_suffix=\"_events\")\n" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% Get the list of qualifying event files\n" - } - } - }, - { - "cell_type": "markdown", - "source": [ - "#### Remap event files\n", - "\n", - "Remapping consists of replacing/adding columns (in this case adding columns)." - ], - "metadata": { - "collapsed": false - } - }, - { - "cell_type": "code", - "execution_count": 5, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Remapping ../data/sternberg\\remapped_data_sternberg_remapped_data_sternberg_sternberg_no_quotes_events.tsv...\n", - "...Writing remapped file to ../data/sternberg\\remapped_data_sternberg_remapped_data_sternberg_remapped_data_sternberg_sternberg_no_quotes_events.tsv\n", - "Remapping ../data/sternberg\\remapped_data_sternberg_remapped_data_sternberg_sternberg_test_events.tsv...\n", - "...Writing remapped file to ../data/sternberg\\remapped_data_sternberg_remapped_data_sternberg_remapped_data_sternberg_sternberg_test_events.tsv\n", - "Remapping ../data/sternberg\\remapped_data_sternberg_remapped_data_sternberg_sternberg_with_quotes_events.tsv...\n", - "...Writing remapped file to ../data/sternberg\\remapped_data_sternberg_remapped_data_sternberg_remapped_data_sternberg_sternberg_with_quotes_events.tsv\n", - "Remapping ../data/sternberg\\sternberg_no_quotes_events.tsv...\n", - "...Writing remapped file to ../data/sternberg\\remapped_data_sternberg_sternberg_no_quotes_events.tsv\n", - "Remapping ../data/sternberg\\sternberg_test_events.tsv...\n", - "...Writing remapped file to ../data/sternberg\\remapped_data_sternberg_sternberg_test_events.tsv\n", - "Remapping ../data/sternberg\\sternberg_with_quotes_events.tsv...\n", - "...Writing remapped file to ../data/sternberg\\remapped_data_sternberg_sternberg_with_quotes_events.tsv\n" - ] - } - ], - "source": [ - "from hed.util.io_util import generate_filename\n", - "for file in event_file_list:\n", - " print(f\"Remapping {file}...\")\n", - " df_new, missing = key_map.remap(file)\n", - " if missing:\n", - " print(f\"The keys {str(missing)} were not in the map for {file}\")\n", - " file_name = generate_filename(file, name_prefix=\"remapped\", extension='.tsv')\n", - " file_path = os.path.join(data_directory, file_name)\n", - " print(f\"...Writing remapped file to {file_path}\")\n", - " df_new.to_csv(file_path, sep='\\t', index=False)" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% Remap the requested event files\n" - } - } - } - ], - "metadata": { - "kernelspec": { - "display_name": "Python 3", - "language": "python", - "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 2 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython2", - "version": "2.7.6" - } - }, - "nbformat": 4, - "nbformat_minor": 0 -} \ No newline at end of file diff --git a/hedcode/jupyter_notebooks/utilities/needs_refactoring/tag_columns.ipynb b/hedcode/jupyter_notebooks/utilities/needs_refactoring/tag_columns.ipynb deleted file mode 100644 index 290a9726..00000000 --- a/hedcode/jupyter_notebooks/utilities/needs_refactoring/tag_columns.ipynb +++ /dev/null @@ -1,430 +0,0 @@ -{ - "cells": [ - { - "cell_type": "markdown", - "metadata": { - "collapsed": true, - "pycharm": { - "name": "#%% md\n" - } - }, - "source": [ - "## Tag column values.\n", - "\n", - "This notebook demonstrates how take an event file or a map and create a\n", - "two-column spreadsheet that makes it easy to assign HED tags to the unique\n", - "values in the columns. The input can either be event files or a map.\n", - "This notebook uses a map as the example.\n", - "\n", - "**Table 1:** Excerpt of a map designed to map the `type` column into\n", - "a combination of columns `event_type`, `task_role`, and `letter`.\n", - "\n", - "| type\t | event_type | task_role | letter |\n", - "| ------- | ----------- | ---------------- | ------ |\n", - "| A\t | show_letter | target | A |\n", - "| gD | show_letter | non-target | D |\n", - "| Y | show_letter | target | E |\n", - "| rK | show_letter | probe | K |\n", - "| nonWM | show_cross | fixate | + |\n", - "| correct | sound_beep | correct_feedback | n/a |\n", - "| 1 | right_click | in_group | n/a |\n", - "\n", - "In order to annotate the data using HED tags, you must associate the\n", - "meaning of each term in the relevant columns of the event file with a HED string.\n", - "\n", - "To make this easier, we flatten the information into a two-column spreadsheet\n", - "that can be easily edited. Table 2 shows a *flattened* version of Table 1.\n", - "\n", - "**Table 2:** A flattened version of Table 1. The categorical columns are\n", - "`event_type` and `task_role`. The `letter` column is a value column.\n", - "\n", - "| column | HED |\n", - "| ----------------- | ----------------------- |\n", - "| \\_\\*\\_event\\_type\\_\\*\\_ | n/a |\n", - "| right_click | Label/right_click |\n", - "| show_dash | Label/show_dash |\n", - "| show_cross | Label/show_cross |\n", - "| sound_beep | Label/sound_beep |\n", - "| \\_\\*\\_task\\_role\\_\\*\\_ | n/a |\n", - "| correct_feedback | Label/correct_feedback |\n", - "| fixate | Label/fixate |\n", - "| in_group | Label/in_group |\n", - "| non_target | Label/non_target |\n", - "| probe | Label/probe |\n", - "| target | Label/target |\n", - "| \\_\\*\\_letter\\_\\*\\_ | Label/letter, Label/# |\n", - "\n", - "The column names `event_type` and `task_role` are categorical columns, so\n", - "they appear as separator rows with HED columns values `n/a`.\n", - "\n", - "Each unique value in the categorical columns appears in a separate row\n", - "following its column name. Dummy HED tags using *Label* are filled in\n", - "as placeholders.\n", - "\n", - "The `letter` value column values are represented by a single row. The HED\n", - "tag for this column must have a `#` placeholder. HED tools substitute\n", - "the particular value in the table for `#` when the annotation is assembled.\n", - "\n", - "After you have updated the spreadsheet of Table 2 with the appropriate HED\n", - "tags, you will need to convert it to a JSON sidecar to be used with BIDS\n", - "datasets. Table 3 shows the *unflattened* conversion of Table 2 into the\n", - "JSON form.\n", - "\n", - "**Table 3:** The unflattened JSON sidecar.\n", - "\n", - "```json\n", - "{\n", - " \"event_type\": {\n", - " \"HED\": {\n", - " \"right_click\": \"Label/right_click\",\n", - " \"show_cross\": \"Label/show_cross\",\n", - " \"show_letter\": \"Label/show_letter\",\n", - " \"sound_beep\": \"Label/sound_beep\"\n", - " }\n", - " },\n", - " \"task_role\": {\n", - " \"HED\": {\n", - " \"correct_feedback\": \"Label/correct_feedback\",\n", - " \"fixate\": \"Label/fixate\",\n", - " \"in_group\": \"Label/in_group\",\n", - " \"non_target\": \"Label/non_target\",\n", - " \"probe\": \"Label/probe\",\n", - " \"target\": \"Label/target\"\n", - " }\n", - " },\n", - " \"letter\": {\n", - " \"HED\": \"Label/letter, Label/#\"\n", - " }\n", - "}\n", - "\n", - "```" - ] - }, - { - "cell_type": "markdown", - "source": [ - "#### Read the completed template" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% md\n" - } - } - }, - { - "cell_type": "code", - "source": [ - "import os\n", - "from hed.tools.summaries.col_dict import ColumnDict\n", - "data_path = \"../data/sternberg_data\"\n", - "remap_file = os.path.join(data_path, \"sternberg_map.tsv\")\n", - "col_dict = ColumnDict(value_cols=['letter'], skip_cols=['type'], name='SternbergFlat')\n", - "col_dict.update(remap_file)" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% Load the event remapping and create a dictionary\n" - } - }, - "execution_count": 1, - "outputs": [] - }, - { - "cell_type": "markdown", - "source": [ - "#### Output the template for viewing" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% md\n" - } - } - }, - { - "cell_type": "code", - "execution_count": 2, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Summary for column dictionary SternbergFlat:\n", - " Categorical columns (2):\n", - " event_type (9 distinct values):\n", - " fixation: 1\n", - " left_click: 1\n", - " response: 1\n", - " right_click: 1\n", - " show_cross: 1\n", - " show_dash: 1\n", - " show_letter: 78\n", - " sound_beep: 1\n", - " sound_buzz: 2\n", - " task_role (11 distinct values):\n", - " correct_feedback: 1\n", - " fixate: 1\n", - " in_group: 1\n", - " incorrect_feedback: 2\n", - " non_target: 26\n", - " out_group: 1\n", - " probe: 26\n", - " ready: 1\n", - " target: 26\n", - " unknown: 1\n", - " work_memory: 1\n", - " Value columns (1):\n", - " letter: 87\n" - ] - } - ], - "source": [ - "col_dict.print()" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% Output the dictionary\n" - } - } - }, - { - "cell_type": "markdown", - "source": [ - "#### Create a flattened version of the template to facilitate tagging" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% md\n" - } - } - }, - { - "cell_type": "code", - "execution_count": 3, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - " column HED\n", - "0 _*_event_type_*_ n/a\n", - "1 fixation Label/fixation\n", - "2 left_click Label/left_click\n", - "3 response Label/response\n", - "4 right_click Label/right_click\n", - "5 show_cross Label/show_cross\n", - "6 show_dash Label/show_dash\n", - "7 show_letter Label/show_letter\n", - "8 sound_beep Label/sound_beep\n", - "9 sound_buzz Label/sound_buzz\n", - "10 _*_task_role_*_ n/a\n", - "11 correct_feedback Label/correct_feedback\n", - "12 fixate Label/fixate\n", - "13 in_group Label/in_group\n", - "14 incorrect_feedback Label/incorrect_feedback\n", - "15 non_target Label/non_target\n", - "16 out_group Label/out_group\n", - "17 probe Label/probe\n", - "18 ready Label/ready\n", - "19 target Label/target\n", - "20 unknown Label/unknown\n", - "21 work_memory Label/work_memory\n", - "22 _*_letter_*_ Label/letter, Label/#\n" - ] - } - ], - "source": [ - "df = col_dict.get_flattened()\n", - "print(df.to_string())" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% Flatten the column dictionary and view\n" - } - } - }, - { - "cell_type": "markdown", - "source": [ - "#### Output the flattened dictionary\n", - "\n", - "The flattened file should be edited to replace the dummy *Label* HED tags with\n", - "the desired annotations." - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% md\n" - } - } - }, - { - "cell_type": "code", - "execution_count": 4, - "outputs": [], - "source": [ - "file_path = os.path.join(data_path, 'sternberg_flattened.tsv')\n", - "df.to_csv(file_path, sep='\\t', index=False)" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% Output the flattened dictionary\n" - } - } - }, - { - "cell_type": "markdown", - "source": [ - "#### Create a JSON sidecar from the flattened dictionary\n", - "\n", - "Once the flattened spreadsheet is completed, you can convert\n", - "directly to a JSON sidecar by unflattening.\n" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% md\n" - } - } - }, - { - "cell_type": "code", - "execution_count": 5, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "{\n", - " \"event_type\": {\n", - " \"HED\": {\n", - " \"fixation\": \"Label/fixation\",\n", - " \"left_click\": \"Label/left_click\",\n", - " \"response\": \"Label/response\",\n", - " \"right_click\": \"Label/right_click\",\n", - " \"show_cross\": \"Label/show_cross\",\n", - " \"show_dash\": \"Label/show_dash\",\n", - " \"show_letter\": \"Label/show_letter\",\n", - " \"sound_beep\": \"Label/sound_beep\",\n", - " \"sound_buzz\": \"Label/sound_buzz\"\n", - " }\n", - " },\n", - " \"task_role\": {\n", - " \"HED\": {\n", - " \"correct_feedback\": \"Label/correct_feedback\",\n", - " \"fixate\": \"Label/fixate\",\n", - " \"in_group\": \"Label/in_group\",\n", - " \"incorrect_feedback\": \"Label/incorrect_feedback\",\n", - " \"non_target\": \"Label/non_target\",\n", - " \"out_group\": \"Label/out_group\",\n", - " \"probe\": \"Label/probe\",\n", - " \"ready\": \"Label/ready\",\n", - " \"target\": \"Label/target\",\n", - " \"unknown\": \"Label/unknown\",\n", - " \"work_memory\": \"Label/work_memory\"\n", - " }\n", - " },\n", - " \"letter\": {\n", - " \"HED\": \"Label/letter, Label/#\"\n", - " }\n", - "}\n" - ] - } - ], - "source": [ - "from json import dumps\n", - "from hed.tools.sidecar_map import SidecarMap\n", - "from hed.util.data_util import get_new_dataframe\n", - "\n", - "s_map = SidecarMap()\n", - "file_path = os.path.join(data_path, 'sternberg_flattened.tsv')\n", - "df = get_new_dataframe(file_path)\n", - "sidecar = s_map.unflatten_hed(df)\n", - "sidecar_string = dumps(sidecar, indent=2)\n", - "print(sidecar_string)" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% Create a sidecar\n" - } - } - }, - { - "cell_type": "markdown", - "source": [ - "#### Save the JSON sidecar in the file\n", - "\n", - "The general strategy is to produce a single JSON events sidecar that\n", - "will be placed at the top level the dataset to annotate the entire dataset." - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% md\n" - } - } - }, - { - "cell_type": "code", - "execution_count": 6, - "outputs": [], - "source": [ - "json_path = os.path.join(data_path, 'sternberg_events.json')\n", - "json_file = open(json_path, \"w\")\n", - "json_file.write(sidecar_string)\n", - "json_file.close()" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% Save the string to a sidecar file\n" - } - } - }, - { - "cell_type": "markdown", - "source": [ - "#### Enhance the JSON sidecar\n", - "\n", - "You may wish to added other information to the JSON sidecar such as\n", - "the `levels` fields for categorical columns. The `SidecarMap` has\n", - "facilities for flattening and unflattening JSON files of arbitrary\n", - "depth. You can use these facilities to easily edit and reconvert." - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% md\n" - } - } - } - ], - "metadata": { - "kernelspec": { - "display_name": "Python 3", - "language": "python", - "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 2 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython2", - "version": "2.7.6" - } - }, - "nbformat": 4, - "nbformat_minor": 0 -} \ No newline at end of file diff --git a/hedcode/jupyter_notebooks/utilities/remove_dirs.ipynb b/hedcode/jupyter_notebooks/utilities/remove_dirs.ipynb deleted file mode 100644 index 43400746..00000000 --- a/hedcode/jupyter_notebooks/utilities/remove_dirs.ipynb +++ /dev/null @@ -1,55 +0,0 @@ -{ - "cells": [ - { - "cell_type": "code", - "execution_count": null, - "metadata": { - "collapsed": true, - "pycharm": { - "name": "#%% Remove directories of certain type\n" - } - }, - "outputs": [], - "source": [ - "import os\n", - "import shutil\n", - "\n", - "root_path = '/XXX'\n", - "\n", - "dir_list = ['dwi']\n", - "exclude_dirs = []\n", - "dirs_to_delete = []\n", - "for root, dirs, files in os.walk(root_path, topdown=True):\n", - " for d in dirs:\n", - " if d in dir_list:\n", - " dirs_to_delete.append(os.path.realpath(os.path.join(root, d)))\n", - "\n", - "for dir_path in dirs_to_delete:\n", - " if os.path.exists(dir_path):\n", - " shutil.rmtree(dir_path)\n", - " print(f\"Removed {dir_path}\")" - ] - } - ], - "metadata": { - "kernelspec": { - "display_name": "Python 3", - "language": "python", - "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 2 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython2", - "version": "2.7.6" - } - }, - "nbformat": 4, - "nbformat_minor": 0 -} \ No newline at end of file diff --git a/hedcode/jupyter_notebooks/utilities/remove_files.ipynb b/hedcode/jupyter_notebooks/utilities/remove_files.ipynb deleted file mode 100644 index 4bf029d2..00000000 --- a/hedcode/jupyter_notebooks/utilities/remove_files.ipynb +++ /dev/null @@ -1,57 +0,0 @@ -{ - "cells": [ - { - "cell_type": "markdown", - "metadata": { - "collapsed": true, - "pycharm": { - "name": "#%% md\n" - } - }, - "source": [ - "## Remove files of a certain type" - ] - }, - { - "cell_type": "code", - "execution_count": 4, - "outputs": [], - "source": [ - "import os\n", - "from hed.tools import get_file_list\n", - "\n", - "root_path = '/XXX'\n", - "file_list = get_file_list(root_path, extensions=[\".tsv.gz\"], name_suffix=\"_physio\")\n", - "for file in file_list:\n", - " os.remove(file)\n" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% Find the files\n" - } - } - } - ], - "metadata": { - "kernelspec": { - "display_name": "Python 3", - "language": "python", - "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 2 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython2", - "version": "2.7.6" - } - }, - "nbformat": 4, - "nbformat_minor": 0 -} \ No newline at end of file diff --git a/hedcode/jupyter_notebooks/utilities/remove_specified_dirs.ipynb b/hedcode/jupyter_notebooks/utilities/remove_specified_dirs.ipynb deleted file mode 100644 index 4da6319b..00000000 --- a/hedcode/jupyter_notebooks/utilities/remove_specified_dirs.ipynb +++ /dev/null @@ -1,231 +0,0 @@ -{ - "cells": [ - { - "cell_type": "code", - "execution_count": 1, - "metadata": { - "collapsed": true, - "pycharm": { - "name": "#%% Remove directories of certain type\n" - } - }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Removed T:/ds002790-test1\\sub-0051\n", - "Removed T:/ds002790-test1\\sub-0052\n", - "Removed T:/ds002790-test1\\sub-0053\n", - "Removed T:/ds002790-test1\\sub-0054\n", - "Removed T:/ds002790-test1\\sub-0055\n", - "Removed T:/ds002790-test1\\sub-0056\n", - "Removed T:/ds002790-test1\\sub-0057\n", - "Removed T:/ds002790-test1\\sub-0058\n", - "Removed T:/ds002790-test1\\sub-0059\n", - "Removed T:/ds002790-test1\\sub-0060\n", - "Removed T:/ds002790-test1\\sub-0061\n", - "Removed T:/ds002790-test1\\sub-0062\n", - "Removed T:/ds002790-test1\\sub-0063\n", - "Removed T:/ds002790-test1\\sub-0064\n", - "Removed T:/ds002790-test1\\sub-0065\n", - "Removed T:/ds002790-test1\\sub-0066\n", - "Removed T:/ds002790-test1\\sub-0067\n", - "Removed T:/ds002790-test1\\sub-0068\n", - "Removed T:/ds002790-test1\\sub-0069\n", - "Removed T:/ds002790-test1\\sub-0070\n", - "Removed T:/ds002790-test1\\sub-0071\n", - "Removed T:/ds002790-test1\\sub-0072\n", - "Removed T:/ds002790-test1\\sub-0073\n", - "Removed T:/ds002790-test1\\sub-0074\n", - "Removed T:/ds002790-test1\\sub-0075\n", - "Removed T:/ds002790-test1\\sub-0076\n", - "Removed T:/ds002790-test1\\sub-0077\n", - "Removed T:/ds002790-test1\\sub-0078\n", - "Removed T:/ds002790-test1\\sub-0079\n", - "Removed T:/ds002790-test1\\sub-0080\n", - "Removed T:/ds002790-test1\\sub-0081\n", - "Removed T:/ds002790-test1\\sub-0082\n", - "Removed T:/ds002790-test1\\sub-0083\n", - "Removed T:/ds002790-test1\\sub-0084\n", - 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"Removed T:/ds002790-test1\\sub-0205\n", - "Removed T:/ds002790-test1\\sub-0206\n", - "Removed T:/ds002790-test1\\sub-0207\n", - "Removed T:/ds002790-test1\\sub-0208\n", - "Removed T:/ds002790-test1\\sub-0209\n", - "Removed T:/ds002790-test1\\sub-0210\n", - "Removed T:/ds002790-test1\\sub-0211\n", - "Removed T:/ds002790-test1\\sub-0212\n", - "Removed T:/ds002790-test1\\sub-0213\n", - "Removed T:/ds002790-test1\\sub-0214\n", - "Removed T:/ds002790-test1\\sub-0215\n", - "Removed T:/ds002790-test1\\sub-0216\n", - "Removed T:/ds002790-test1\\sub-0217\n", - "Removed T:/ds002790-test1\\sub-0218\n", - "Removed T:/ds002790-test1\\sub-0219\n", - "Removed T:/ds002790-test1\\sub-0220\n", - "Removed T:/ds002790-test1\\sub-0221\n", - "Removed T:/ds002790-test1\\sub-0222\n", - "Removed T:/ds002790-test1\\sub-0223\n", - "Removed T:/ds002790-test1\\sub-0224\n", - "Removed T:/ds002790-test1\\sub-0225\n", - "Removed T:/ds002790-test1\\sub-0226\n" - ] - } - ], - "source": [ - "import os\n", - "import shutil\n", - "\n", - "root_path = '/XXX'\n", - "mylist = list(range(51,227))\n", - "for value in list(range(51,227)):\n", - " dir_path = os.path.join(root_path, f\"sub-{value:04d}\")\n", - " if os.path.exists(dir_path):\n", - " shutil.rmtree(dir_path)\n", - " print(f\"Removed {dir_path}\")\n" - ] - } - ], - "metadata": { - "kernelspec": { - "display_name": "Python 3", - "language": "python", - "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 2 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython2", - "version": "2.7.6" - } - }, - "nbformat": 4, - "nbformat_minor": 0 -} \ No newline at end of file diff --git a/hedcode/jupyter_notebooks/utilities/remove_stim_files.ipynb b/hedcode/jupyter_notebooks/utilities/remove_stim_files.ipynb deleted file mode 100644 index a4123b42..00000000 --- a/hedcode/jupyter_notebooks/utilities/remove_stim_files.ipynb +++ /dev/null @@ -1,275 +0,0 @@ -{ - "cells": [ - { - "cell_type": "markdown", - "metadata": { - "collapsed": true, - "pycharm": { - "name": "#%% md\n" - } - }, - "source": [ - "This script removes the extra stim files in a BIDS example dataset. It first makes a hash table of\n", - "the stim files listed in the events.tsv files. It then removes those files in the stimuli\n", - "directory that aren't there. The purpose is to avoid a BIDS warning." - ] - }, - { - "cell_type": "code", - "execution_count": 3, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "f005.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\f005.bmp\n", - "f009.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\f009.bmp\n", - "f011.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\f011.bmp\n", - "f012.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\f012.bmp\n", - "f013.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\f013.bmp\n", - "f015.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\f015.bmp\n", - "f017.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\f017.bmp\n", - "f021.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\f021.bmp\n", - 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"u051.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u051.bmp\n", - "u052.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u052.bmp\n", - "u054.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u054.bmp\n", - "u056.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u056.bmp\n", - "u057.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u057.bmp\n", - "u063.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u063.bmp\n", - "u064.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u064.bmp\n", - "u065.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u065.bmp\n", - "u068.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u068.bmp\n", - "u071.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u071.bmp\n", - "u073.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u073.bmp\n", - "u078.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u078.bmp\n", - "u081.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u081.bmp\n", - "u090.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u090.bmp\n", - "u092.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u092.bmp\n", - "u093.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u093.bmp\n", - "u099.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u099.bmp\n", - "u101.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u101.bmp\n", - "u102.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u102.bmp\n", - "u104.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u104.bmp\n", - "u105.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u105.bmp\n", - "u107.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u107.bmp\n", - "u108.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u108.bmp\n", - "u114.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u114.bmp\n", - "u116.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u116.bmp\n", - "u118.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u118.bmp\n", - "u121.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u121.bmp\n", - "u122.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u122.bmp\n", - "u125.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u125.bmp\n", - "u129.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u129.bmp\n", - "u130.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u130.bmp\n", - "u136.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u136.bmp\n", - "u137.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u137.bmp\n", - "u138.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u138.bmp\n", - "u141.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u141.bmp\n", - "u144.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u144.bmp\n", - "u145.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u145.bmp\n", - "u146.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u146.bmp\n", - "u147.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u147.bmp\n", - "u148.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u148.bmp\n", - "u149.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u149.bmp\n", - "u150.bmp: D:\\Research\\HED\\hed-examples\\datasets\\eeg_ds003645s_hed_library\\stimuli\\u150.bmp\n", - "{'n/a': '', 'u032.bmp': '', 'circle.bmp': '', 'cross.bmp': '', 'u088.bmp': '', 'u084.bmp': '', 'f123.bmp': '', 'u022.bmp': '', 'f094.bmp': '', 's150.bmp': '', 'f063.bmp': '', 'u004.bmp': '', 'f006.bmp': '', 's043.bmp': '', 's083.bmp': '', 'f093.bmp': '', 'f143.bmp': '', 's142.bmp': '', 'u131.bmp': '', 'u020.bmp': '', 's088.bmp': '', 's081.bmp': '', 'u077.bmp': '', 's034.bmp': '', 'u100.bmp': '', 's087.bmp': '', 's074.bmp': '', 'u058.bmp': '', 'f038.bmp': '', 's090.bmp': '', 'f020.bmp': '', 's096.bmp': '', 'f148.bmp': '', 's071.bmp': '', 'u005.bmp': '', 'f119.bmp': '', 'f145.bmp': '', 'u117.bmp': '', 'f098.bmp': '', 's008.bmp': '', 'f139.bmp': '', 's001.bmp': '', 'f028.bmp': '', 'u095.bmp': '', 's037.bmp': '', 'f089.bmp': '', 'f111.bmp': '', 'u070.bmp': '', 'f124.bmp': '', 'u048.bmp': '', 'f074.bmp': '', 'u021.bmp': '', 'u019.bmp': '', 's026.bmp': '', 's086.bmp': '', 'f132.bmp': '', 'f010.bmp': '', 's056.bmp': '', 'f104.bmp': '', 's068.bmp': '', 'f036.bmp': '', 'u097.bmp': '', 'f103.bmp': '', 'u112.bmp': '', 'f130.bmp': '', 'f004.bmp': '', 'u111.bmp': '', 'f025.bmp': '', 's111.bmp': '', 's112.bmp': '', 's115.bmp': '', 'u123.bmp': '', 's005.bmp': '', 'u045.bmp': '', 'f059.bmp': '', 'f041.bmp': '', 's139.bmp': '', 's076.bmp': '', 'f081.bmp': '', 'f141.bmp': '', 's137.bmp': '', 'u120.bmp': '', 'u002.bmp': '', 'f121.bmp': '', 'u018.bmp': '', 'u014.bmp': '', 'u023.bmp': '', 'u041.bmp': '', 's125.bmp': '', 'f146.bmp': '', 'f058.bmp': '', 'u011.bmp': '', 's036.bmp': '', 'f112.bmp': '', 'u066.bmp': '', 'u113.bmp': '', 's100.bmp': '', 'u069.bmp': '', 'f039.bmp': '', 'f101.bmp': '', 's058.bmp': '', 'u061.bmp': '', 'f105.bmp': '', 'f138.bmp': '', 'f064.bmp': '', 'u127.bmp': '', 's103.bmp': '', 'u143.bmp': '', 'u074.bmp': '', 'u134.bmp': '', 'f108.bmp': '', 's141.bmp': '', 'u132.bmp': '', 's033.bmp': '', 's062.bmp': '', 'f102.bmp': '', 'u106.bmp': '', 's017.bmp': '', 'u024.bmp': '', 'f051.bmp': '', 's025.bmp': '', 'f147.bmp': '', 's080.bmp': '', 'u098.bmp': '', 'f099.bmp': '', 'u091.bmp': '', 's106.bmp': '', 'f034.bmp': '', 's006.bmp': '', 'u083.bmp': '', 's015.bmp': '', 'f075.bmp': '', 'u103.bmp': '', 's044.bmp': '', 'u055.bmp': '', 'u079.bmp': '', 'f033.bmp': '', 's028.bmp': '', 's135.bmp': '', 'f072.bmp': '', 's066.bmp': '', 'u139.bmp': '', 's018.bmp': '', 'f076.bmp': '', 's121.bmp': '', 's051.bmp': '', 'u140.bmp': '', 'u124.bmp': '', 'f150.bmp': '', 's053.bmp': '', 'u089.bmp': '', 's052.bmp': '', 's138.bmp': '', 'u128.bmp': '', 'u044.bmp': '', 'u086.bmp': ''}\n", - "190 stim files removed\n" - ] - } - ], - "source": [ - "import os\n", - "from hed.tools import get_file_list, get_new_dataframe\n", - "\n", - "bids_root_path = os.path.realpath('../../../datasets/eeg_ds003645s_hed_library')\n", - "stim_file_path = os.path.realpath(os.path.join(bids_root_path, 'stimuli'))\n", - "\n", - "event_file_list = get_file_list(bids_root_path, extensions=[\".tsv\"], name_suffix=\"_events\")\n", - "stim_dict = {}\n", - "for file in event_file_list:\n", - " df = get_new_dataframe(file)\n", - " s_files = df['stim_file'].tolist()\n", - " for s_file in s_files:\n", - " stim_dict[s_file] = \"\"\n", - "\n", - "stim_file_list = get_file_list(stim_file_path, extensions=[\".bmp\"])\n", - "remove_count = 0\n", - "for file in stim_file_list:\n", - " file_name = os.path.basename(file)\n", - " if file_name not in stim_dict:\n", - " os.remove(file)\n", - " print(f\"{file_name}: {file}\")\n", - " remove_count += 1\n", - "print(f\"{stim_dict}\")\n", - "print(f\"{remove_count} stim files removed\")" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%%\n" - } - } - } - ], - "metadata": { - "kernelspec": { - "display_name": "Python 3", - "language": "python", - "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 2 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython2", - "version": "2.7.6" - } - }, - "nbformat": 4, - "nbformat_minor": 0 -} \ No newline at end of file diff --git a/hedcode/jupyter_notebooks/utilities/zero_data_files.ipynb b/hedcode/jupyter_notebooks/utilities/zero_data_files.ipynb deleted file mode 100644 index 2e23b380..00000000 --- a/hedcode/jupyter_notebooks/utilities/zero_data_files.ipynb +++ /dev/null @@ -1,426 +0,0 @@ -{ - "cells": [ - { - "cell_type": "markdown", - "metadata": { - "collapsed": true, - "pycharm": { - "name": "#%% md\n" - } - }, - "source": [ - "## Create data files of zero length\n", - "\n", - "Example datasets, such as those in bids-examples or hed-examples GitHub repositories are\n", - "used as test cases for various validation and other operations.\n", - "Because the neuroimaging portion of the data is so large,\n", - "these datasets cannot be stored in GitHub.\n", - "\n", - "This script traverses a directory tree and zeros the length of the files with the specified types." - ] - }, - { - "cell_type": "code", - "execution_count": 1, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Truncating circle.bmp ...\n", - "Truncating cross.bmp ...\n", - "Truncating f004.bmp ...\n", - "Truncating f005.bmp ...\n", - "Truncating f006.bmp ...\n", - "Truncating f009.bmp ...\n", - "Truncating f010.bmp ...\n", - "Truncating f011.bmp ...\n", - "Truncating f012.bmp ...\n", - "Truncating f013.bmp ...\n", - "Truncating f015.bmp ...\n", - "Truncating f017.bmp ...\n", - "Truncating f020.bmp ...\n", - "Truncating f021.bmp ...\n", - "Truncating f022.bmp ...\n", - "Truncating f023.bmp ...\n", - "Truncating f024.bmp ...\n", - "Truncating f025.bmp ...\n", - "Truncating f026.bmp ...\n", - "Truncating f027.bmp ...\n", - "Truncating f028.bmp ...\n", - "Truncating f031.bmp ...\n", - "Truncating f032.bmp ...\n", - "Truncating f033.bmp ...\n", - "Truncating f034.bmp ...\n", - "Truncating f036.bmp ...\n", - "Truncating f037.bmp ...\n", - "Truncating f038.bmp ...\n", - "Truncating f039.bmp ...\n", - "Truncating f040.bmp ...\n", - "Truncating f041.bmp ...\n", - "Truncating f045.bmp ...\n", - "Truncating f046.bmp ...\n", - "Truncating f048.bmp ...\n", - "Truncating f049.bmp ...\n", - "Truncating f051.bmp ...\n", - "Truncating f052.bmp ...\n", - "Truncating f053.bmp ...\n", - "Truncating f054.bmp ...\n", - "Truncating f055.bmp ...\n", - "Truncating f057.bmp ...\n", - "Truncating f058.bmp ...\n", - "Truncating f059.bmp ...\n", - "Truncating f060.bmp ...\n", - "Truncating f062.bmp ...\n", - "Truncating f063.bmp ...\n", - "Truncating f064.bmp ...\n", - "Truncating f065.bmp ...\n", - "Truncating f066.bmp ...\n", - "Truncating f067.bmp ...\n", - "Truncating f068.bmp ...\n", - "Truncating f072.bmp ...\n", - "Truncating f073.bmp ...\n", - "Truncating f074.bmp ...\n", - "Truncating f075.bmp ...\n", - "Truncating f076.bmp ...\n", - "Truncating f077.bmp ...\n", - "Truncating f078.bmp ...\n", - "Truncating f080.bmp ...\n", - "Truncating f081.bmp ...\n", - "Truncating f082.bmp ...\n", - "Truncating f084.bmp ...\n", - "Truncating f087.bmp ...\n", - "Truncating f089.bmp ...\n", - "Truncating f090.bmp ...\n", - "Truncating f091.bmp ...\n", - "Truncating f093.bmp ...\n", - "Truncating f094.bmp ...\n", - "Truncating f095.bmp ...\n", - "Truncating f096.bmp ...\n", - "Truncating f097.bmp ...\n", - "Truncating f098.bmp ...\n", - "Truncating f099.bmp ...\n", - "Truncating f100.bmp ...\n", - "Truncating f101.bmp ...\n", - "Truncating f102.bmp ...\n", - "Truncating f103.bmp ...\n", - "Truncating f104.bmp ...\n", - "Truncating f105.bmp ...\n", - "Truncating f106.bmp ...\n", - "Truncating f108.bmp ...\n", - "Truncating f109.bmp ...\n", - "Truncating f110.bmp ...\n", - "Truncating f111.bmp ...\n", - "Truncating f112.bmp ...\n", - "Truncating f115.bmp ...\n", - "Truncating f117.bmp ...\n", - "Truncating f119.bmp ...\n", - "Truncating f120.bmp ...\n", - "Truncating f121.bmp ...\n", - "Truncating f123.bmp ...\n", - "Truncating f124.bmp ...\n", - "Truncating f127.bmp ...\n", - "Truncating f128.bmp ...\n", - "Truncating f129.bmp ...\n", - "Truncating f130.bmp ...\n", - "Truncating f131.bmp ...\n", - "Truncating f132.bmp ...\n", - "Truncating f133.bmp ...\n", - "Truncating f135.bmp ...\n", - "Truncating f136.bmp ...\n", - "Truncating f137.bmp ...\n", - "Truncating f138.bmp ...\n", - "Truncating f139.bmp ...\n", - "Truncating f140.bmp ...\n", - "Truncating f141.bmp ...\n", - "Truncating f143.bmp ...\n", - "Truncating f145.bmp ...\n", - "Truncating f146.bmp ...\n", - "Truncating f147.bmp ...\n", - "Truncating f148.bmp ...\n", - "Truncating f149.bmp ...\n", - "Truncating f150.bmp ...\n", - "Truncating s001.bmp ...\n", - "Truncating s002.bmp ...\n", - "Truncating s003.bmp ...\n", - "Truncating s005.bmp ...\n", - "Truncating s006.bmp ...\n", - "Truncating s008.bmp ...\n", - "Truncating s009.bmp ...\n", - "Truncating s010.bmp ...\n", - "Truncating s011.bmp ...\n", - "Truncating s012.bmp ...\n", - "Truncating s015.bmp ...\n", - "Truncating s016.bmp ...\n", - "Truncating s017.bmp ...\n", - "Truncating s018.bmp ...\n", - "Truncating s020.bmp ...\n", - "Truncating s021.bmp ...\n", - "Truncating s022.bmp ...\n", - "Truncating s023.bmp ...\n", - "Truncating s024.bmp ...\n", - "Truncating s025.bmp ...\n", - "Truncating s026.bmp ...\n", - "Truncating s027.bmp ...\n", - "Truncating s028.bmp ...\n", - "Truncating s029.bmp ...\n", - "Truncating s030.bmp ...\n", - "Truncating s031.bmp ...\n", - "Truncating s033.bmp ...\n", - "Truncating s034.bmp ...\n", - "Truncating s035.bmp ...\n", - "Truncating s036.bmp ...\n", - "Truncating s037.bmp ...\n", - "Truncating s039.bmp ...\n", - "Truncating s040.bmp ...\n", - "Truncating s041.bmp ...\n", - "Truncating s043.bmp ...\n", - "Truncating s044.bmp ...\n", - "Truncating s045.bmp ...\n", - "Truncating s046.bmp ...\n", - "Truncating s048.bmp ...\n", - "Truncating s049.bmp ...\n", - "Truncating s051.bmp ...\n", - "Truncating s052.bmp ...\n", - "Truncating s053.bmp ...\n", - "Truncating s055.bmp ...\n", - "Truncating s056.bmp ...\n", - "Truncating s057.bmp ...\n", - "Truncating s058.bmp ...\n", - "Truncating s060.bmp ...\n", - "Truncating s062.bmp ...\n", - "Truncating s063.bmp ...\n", - "Truncating s065.bmp ...\n", - "Truncating s066.bmp ...\n", - "Truncating s067.bmp ...\n", - "Truncating s068.bmp ...\n", - "Truncating s071.bmp ...\n", - "Truncating s072.bmp ...\n", - "Truncating s073.bmp ...\n", - "Truncating s074.bmp ...\n", - "Truncating s076.bmp ...\n", - "Truncating s077.bmp ...\n", - "Truncating s080.bmp ...\n", - "Truncating s081.bmp ...\n", - "Truncating s083.bmp ...\n", - "Truncating s084.bmp ...\n", - "Truncating s085.bmp ...\n", - "Truncating s086.bmp ...\n", - "Truncating s087.bmp ...\n", - "Truncating s088.bmp ...\n", - "Truncating s090.bmp ...\n", - "Truncating s091.bmp ...\n", - "Truncating s092.bmp ...\n", - "Truncating s093.bmp ...\n", - "Truncating s094.bmp ...\n", - "Truncating s095.bmp ...\n", - "Truncating s096.bmp ...\n", - "Truncating s098.bmp ...\n", - "Truncating s099.bmp ...\n", - "Truncating s100.bmp ...\n", - "Truncating s101.bmp ...\n", - "Truncating s102.bmp ...\n", - "Truncating s103.bmp ...\n", - "Truncating s105.bmp ...\n", - "Truncating s106.bmp ...\n", - "Truncating s108.bmp ...\n", - "Truncating s109.bmp ...\n", - "Truncating s110.bmp ...\n", - "Truncating s111.bmp ...\n", - "Truncating s112.bmp ...\n", - "Truncating s113.bmp ...\n", - "Truncating s114.bmp ...\n", - "Truncating s115.bmp ...\n", - "Truncating s116.bmp ...\n", - "Truncating s119.bmp ...\n", - "Truncating s121.bmp ...\n", - "Truncating s122.bmp ...\n", - "Truncating s123.bmp ...\n", - "Truncating s124.bmp ...\n", - "Truncating s125.bmp ...\n", - "Truncating s126.bmp ...\n", - "Truncating s127.bmp ...\n", - "Truncating s128.bmp ...\n", - "Truncating s129.bmp ...\n", - "Truncating s131.bmp ...\n", - "Truncating s132.bmp ...\n", - "Truncating s135.bmp ...\n", - "Truncating s136.bmp ...\n", - "Truncating s137.bmp ...\n", - "Truncating s138.bmp ...\n", - "Truncating s139.bmp ...\n", - "Truncating s140.bmp ...\n", - "Truncating s141.bmp ...\n", - "Truncating s142.bmp ...\n", - "Truncating s143.bmp ...\n", - "Truncating s144.bmp ...\n", - "Truncating s146.bmp ...\n", - "Truncating s148.bmp ...\n", - "Truncating s149.bmp ...\n", - "Truncating s150.bmp ...\n", - "Truncating u002.bmp ...\n", - "Truncating u003.bmp ...\n", - "Truncating u004.bmp ...\n", - "Truncating u005.bmp ...\n", - "Truncating u007.bmp ...\n", - "Truncating u008.bmp ...\n", - "Truncating u009.bmp ...\n", - "Truncating u010.bmp ...\n", - "Truncating u011.bmp ...\n", - "Truncating u012.bmp ...\n", - "Truncating u013.bmp ...\n", - "Truncating u014.bmp ...\n", - "Truncating u016.bmp ...\n", - "Truncating u017.bmp ...\n", - "Truncating u018.bmp ...\n", - "Truncating u019.bmp ...\n", - 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"source": [ - "import os\n", - "from hed.tools import get_file_list\n", - "\n", - "exclude_dirs = [\"code\", \"sourcedata\", \"derivatives\"]\n", - "eeglab_exts = [\".set\", \".fdt\"]\n", - "fmri_exts = [\".nii\", \".nii.gz\"]\n", - "image_exts = [\".bmp\"]\n", - "bids_root_path = os.path.realpath('../../../datasets/eeg_ds003645s_hed_library')\n", - "files_bids = get_file_list(bids_root_path, extensions=image_exts, exclude_dirs=exclude_dirs)\n", - "\n", - "\n", - "# Make the set files zero length\n", - "for file in files_bids:\n", - " print(f\"Truncating {os.path.basename(file)} ...\")\n", - " fd = open(file, \"w+\")\n", - " fd.truncate(0)\n", - " fd.close()" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%% Find the files\n" - } - } - } - ], - "metadata": { - "kernelspec": { - "display_name": "Python 3", - "language": "python", - "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 2 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython2", - "version": "2.7.6" - } - }, - "nbformat": 4, - "nbformat_minor": 0 -} \ No newline at end of file diff --git a/hedcode/matlab_scripts/web_services/getTestData.m b/hedcode/matlab_scripts/web_services/getTestData.m index eb87019d..8c937a54 100644 --- a/hedcode/matlab_scripts/web_services/getTestData.m +++ b/hedcode/matlab_scripts/web_services/getTestData.m @@ -27,9 +27,9 @@ fileread('../../data/bids_data/both_types_events_errors.json'); data.labelPrefix = 'Property/Informational-property/Label/'; data.descPrefix = 'Property/Informational-property/Description/'; - data.schemaText = fileread('../../data/schema_data/HED8.0.0.xml'); + data.schemaText = fileread('../../data/schema_data/HED8.2.0.xml'); data.schemaUrl = ['https://raw.githubusercontent.com/hed-standard/' ... - 'hed-schemas/master/standard_schema/hedxml/HED8.0.0.xml']; + 'hed-schemas/master/standard_schema/hedxml/HED8.2.0.xml']; data.spreadsheetText = ... fileread('../../data/spreadsheet_data/LKTEventCodesHED3.tsv'); data.spreadsheetTextExtracted = ... @@ -38,8 +38,4 @@ fileread('../../data/spreadsheet_data/LKTEventCodesHED2.tsv'); data.goodStrings = {'Red,Blue', 'Green', 'White, (Black, Image)'}; data.badStrings = {'Red, Blue, Blech', 'Green', 'White, Black, Binge'}; - data.jsonUpperText = ... - fileread('../../../datasets/eeg_ds003645s_hed_inheritance/task-FacePerception_events.json'); - data.jsonLower2Text = ... - fileread('../../../datasets/eeg_ds003645s_hed_inheritance/sub-002/sub-002_task-FacePerception_events.json'); end \ No newline at end of file diff --git a/hedcode/matlab_scripts/web_services/runAssembleTest.m b/hedcode/matlab_scripts/web_services/runAssembleTest.m index 316a0a34..4b87d676 100644 --- a/hedcode/matlab_scripts/web_services/runAssembleTest.m +++ b/hedcode/matlab_scripts/web_services/runAssembleTest.m @@ -10,7 +10,7 @@ errors = {}; %% Example 4: Assemble valid event HED strings(expand defs on). request4 = struct('service', 'events_assemble', ... - 'schema_version', '8.1.0', ... + 'schema_version', '8.2.0', ... 'sidecar_string', jsonText, ... 'events_string', eventsText, ... 'expand_defs', 'on'); diff --git a/hedcode/matlab_scripts/web_services/runTest.m b/hedcode/matlab_scripts/web_services/runTest.m index 6765f89c..42908096 100644 --- a/hedcode/matlab_scripts/web_services/runTest.m +++ b/hedcode/matlab_scripts/web_services/runTest.m @@ -1,7 +1,9 @@ %% Use this script to run an individual type of service. -% host = 'https://hedtools.ucsd.edu/hed'; +% host = 'https://hedtools.org/hed'; host = 'http://127.0.0.1:5000/'; -%host = 'https://hedtools.ucsd.edu/hed_dev'; +%host = 'https://hedtools.org/hed_dev'; %errors = testLibraryServices(host); %errors = testSpreadsheetServices(host); -errors = testEventSearchServices(host); \ No newline at end of file +%errors = testEventSearchServices(host); +%errors = testEventServices(host); +errors = testStringServices(host); \ No newline at end of file diff --git a/hedcode/matlab_scripts/web_services/testEventRemodelingServices.m b/hedcode/matlab_scripts/web_services/testEventRemodelingServices.m index 488da682..796d14ed 100644 --- a/hedcode/matlab_scripts/web_services/testEventRemodelingServices.m +++ b/hedcode/matlab_scripts/web_services/testEventRemodelingServices.m @@ -12,7 +12,7 @@ % %% Example 1: Remodel an events file with no summary or HED. request1 = struct('service', 'events_remodel', ... - 'schema_version', '8.1.0', ... + 'schema_version', '8.2.0', ... 'remodel_string', data.remodel1Text, ... 'events_string', data.eventsText); @@ -26,7 +26,7 @@ %% Example 2: Remodel an events file with summary and no HED. request2 = struct('service', 'events_remodel', ... - 'schema_version', '8.1.0', ... + 'schema_version', '8.2.0', ... 'remodel_string', data.remodel2Text, ... 'events_string', data.eventsText); @@ -40,7 +40,7 @@ %% Example 3: Summarize files including HED request3 = struct('service', 'events_remodel', ... - 'schema_version', '8.1.0', ... + 'schema_version', '8.2.0', ... 'remodel_string', data.remodel3Text, ... 'events_string', data.eventsText, ... 'sidecar_string', data.jsonText); diff --git a/hedcode/matlab_scripts/web_services/testEventSearchServices.m b/hedcode/matlab_scripts/web_services/testEventSearchServices.m index 147ff2b6..f5dfb706 100644 --- a/hedcode/matlab_scripts/web_services/testEventSearchServices.m +++ b/hedcode/matlab_scripts/web_services/testEventSearchServices.m @@ -12,7 +12,7 @@ %% Example 1: Search an events file for HED request1 = struct('service', 'events_search', ... - 'schema_version', '8.0.0', ... + 'schema_version', '8.2.0', ... 'sidecar_string', data.jsonText, ... 'events_string', data.eventsText, ... 'query', '{Intended-effect, Cue}'); @@ -27,7 +27,7 @@ %% Example 2: Search an events file for HED request2 = struct('service', 'events_search', ... - 'schema_version', '8.0.0', ... + 'schema_version', '8.2.0', ... 'sidecar_string', data.jsonText, ... 'events_string', data.eventsText, ... 'columns_included', '', ... diff --git a/hedcode/matlab_scripts/web_services/testEventServices.m b/hedcode/matlab_scripts/web_services/testEventServices.m index 2d94b00e..f0e9905b 100644 --- a/hedcode/matlab_scripts/web_services/testEventServices.m +++ b/hedcode/matlab_scripts/web_services/testEventServices.m @@ -22,7 +22,7 @@ %% Example 1: Validate valid events file using HED version. request1 = struct('service', 'events_validate', ... - 'schema_version', '8.0.0', ... + 'schema_version', '8.2.0', ... 'sidecar_string', data.jsonText, ... 'events_string', data.eventsText, ... 'check_for_warnings', 'off'); @@ -44,8 +44,9 @@ response2 = webwrite(servicesUrl, request2, options); response2 = jsondecode(response2); outputReport(response2, 'Example 2 validating events with invalid JSON.'); -if ~isempty(response2.error_type) || ... - ~strcmpi(response2.results.msg_category, 'warning') +if isempty(response2.error_type) && ... + ~isempty(response2.results.msg_category) && ... + strcmpi(response2.results.msg_category, 'success') errors{end + 1} = ... 'Example 2 failed to detect event file validation errors.'; end @@ -69,7 +70,7 @@ %% Example 4: Assemble valid event HED strings(expand defs on). request4 = struct('service', 'events_assemble', ... - 'schema_version', '8.0.0', ... + 'schema_version', '8.2.0', ... 'sidecar_string', data.jsonText, ... 'events_string', data.eventsText, ... 'expand_defs', 'on'); @@ -86,7 +87,7 @@ %% Example 5: Assemble valid event HED strings with additional columns. columns_included = {'onset', 'face_type', 'rep_status'}; request5 = struct('service', 'events_assemble', ... - 'schema_version', '8.0.0', ... + 'schema_version', '8.2.0', ... 'sidecar_string', data.jsonText, ... 'events_string', data.eventsText, ... 'columns_included', '', ... diff --git a/hedcode/matlab_scripts/web_services/testLibraryServices.m b/hedcode/matlab_scripts/web_services/testLibraryServices.m index 830e943b..c48c4e38 100644 --- a/hedcode/matlab_scripts/web_services/testLibraryServices.m +++ b/hedcode/matlab_scripts/web_services/testLibraryServices.m @@ -18,7 +18,7 @@ 'events_string', data.eventsText, ... 'check_for_warnings', 'off'); request1.schema_version = ... - {'8.0.0', 'sc:score_1.0.0', 'test:testlib_1.0.2'}; + {'8.2.0', 'sc:score_1.0.0', 'test:testlib_1.0.2'}; response1 = webwrite(servicesUrl, request1, options); response1 = jsondecode(response1); outputReport(response1, 'Example 1 validating a valid event file.'); @@ -34,7 +34,7 @@ 'events_string', data.eventsText, ... 'check_for_warnings', 'off'); request2.schema_version = ... - {'8.0.0', 'sc:score_1.0.0', 'test:testlib_1.0.2'}; + {'8.2.0', 'sc:score_1.0.0', 'test:testlib_1.0.2'}; response2 = webwrite(servicesUrl, request2, options); response2 = jsondecode(response2); outputReport(response2, 'Example 2 validating a valid event file with libraries.'); @@ -45,7 +45,7 @@ %% Example 3: Validate invalid events file because of missing libraries. request3 = struct('service', 'events_validate', ... - 'schema_version', '8.1.0', ... ... + 'schema_version', '8.2.0', ... ... 'sidecar_string', data.jsonLibrary, ... 'events_string', data.eventsText, ... 'check_for_warnings', 'off'); @@ -53,8 +53,9 @@ response3 = webwrite(servicesUrl, request3, options); response3 = jsondecode(response3); outputReport(response3, 'Example 3 validating events with missing library.'); -if ~isempty(response3.error_type) || ... - ~strcmpi(response3.results.msg_category, 'warning') +if isempty(response3.error_type) && ... + ~isempty(response3.results.msg_category) && ... + strcmpi(response3.results.msg_category, 'success') errors{end + 1} = ... 'Example 3 failed to detect event file validation errors missing library.'; end diff --git a/hedcode/matlab_scripts/web_services/testSidecarServices.m b/hedcode/matlab_scripts/web_services/testSidecarServices.m index 44b951fc..55874f3b 100644 --- a/hedcode/matlab_scripts/web_services/testSidecarServices.m +++ b/hedcode/matlab_scripts/web_services/testSidecarServices.m @@ -12,10 +12,6 @@ % Example 5: Extract a 4-column spreadsheet from a valid JSON sidecar. % % Example 6: Merge a 4-column spreadsheet with a JSON sidecar. -% -% Example 7: Validate a sidecar that is valid after merging. -% -% Example 8: Validate a sidecar that is not valid until merging. %% Get the options and data [servicesUrl, options] = getHostOptions(host); @@ -24,7 +20,7 @@ %% Example 1: Validate valid JSON sidecar using a HED version. request1 = struct('service', 'sidecar_validate', ... - 'schema_version', '8.0.0', ... + 'schema_version', '8.2.0', ... 'sidecar_string', data.jsonText, ... 'check_for_warnings', 'on'); response1 = webwrite(servicesUrl, request1, options); @@ -43,8 +39,9 @@ response2 = webwrite(servicesUrl, request2, options); response2 = jsondecode(response2); outputReport(response2, 'Example 2 validate an invalid JSON sidecar.'); -if ~isempty(response2.error_type) || ... - ~strcmpi(response2.results.msg_category, 'warning') +if isempty(response2.error_type) && ... + ~isempty(response2.results.msg_category) && ... + strcmpi(response2.results.msg_category, 'success') errors{end + 1} = 'Example 2 failed to detect an incorrect JSON file.'; end @@ -64,7 +61,7 @@ %% Example 4: Convert valid JSON sidecar to short using a HED version.. request4 = struct('service', 'sidecar_to_short', ... - 'schema_version', '8.0.0', ... + 'schema_version', '8.2.0', ... 'sidecar_string', data.jsonText, ... 'expand_defs', 'on'); response4 = webwrite(servicesUrl, request4, options); @@ -102,33 +99,4 @@ errors{end + 1} = ... 'Example 6 failed to merge 4-column spreadsheet with JSON.'; end - - -%% Example 7: Validate a JSON sidecar with inheritance. -request7 = struct('service', 'sidecar_validate', ... - 'schema_version', '8.1.0',... - 'sidecar_string', '', 'has_column_names', 'on'); -request7.sidecar_string = {data.jsonUpperText, data.jsonLower2Text}; -response7 = webwrite(servicesUrl, request7, options); -response7 = jsondecode(response7); -outputReport(response7, 'Example 7 validate a merged sidecar.'); -if ~isempty(response7.error_type) || ... - ~strcmpi(response7.results.msg_category, 'success') - errors{end + 1} = ... - 'Example 7 failed to validate a merged sidecar.'; -end - -%% Example 8: Validate a JSON sidecar invalid without inheritance. -request8 = struct('service', 'sidecar_validate', ... - 'schema_version', '8.1.0',... - 'sidecar_string', '', 'has_column_names', 'on'); -request8.sidecar_string = {data.jsonLower2Text}; -response8 = webwrite(servicesUrl, request8, options); -response8 = jsondecode(response8); -outputReport(response8, 'Example 8 validate a sidecar that was not merged.'); -if ~isempty(response8.error_type) || ... - ~strcmpi(response8.results.msg_category, 'warning') - errors{end + 1} = ... - 'Example 8 failed to detect a sidecar that should have been merged.'; -end \ No newline at end of file diff --git a/hedcode/matlab_scripts/web_services/testSpreadsheetServices.m b/hedcode/matlab_scripts/web_services/testSpreadsheetServices.m index 47efe1bc..2a1a1db2 100644 --- a/hedcode/matlab_scripts/web_services/testSpreadsheetServices.m +++ b/hedcode/matlab_scripts/web_services/testSpreadsheetServices.m @@ -16,13 +16,9 @@ %% Example 1: Validate valid spreadsheet file using schema version. request1 = struct('service', 'spreadsheet_validate', ... - 'schema_version', '8.0.0', ... + 'schema_version', '8.2.0', ... 'spreadsheet_string', data.spreadsheetText, ... 'check_for_warnings', 'on', ... - 'has_column_names', 'on', ... - 'column_1_input', data.labelPrefix, ... - 'column_1_check', 'on', ... - 'column_4_input', '', ... 'column_4_check', 'on'); response1 = webwrite(servicesUrl, request1, options); response1 = jsondecode(response1); @@ -38,17 +34,13 @@ request2 = struct('service', 'spreadsheet_validate', ... 'schema_url', data.schemaUrl, ... 'spreadsheet_string', data.spreadsheetTextInvalid, ... - 'check_for_warnings', 'on', ... - 'has_column_names', 'on', ... - 'column_1_input', 'Event/Label/', ... - 'column_1_check', 'on', ... - 'column_4_input', '', ... 'column_4_check', 'on'); response2 = webwrite(servicesUrl, request2, options); response2 = jsondecode(response2); outputReport(response2, 'Example 2 validate an invalid spreadsheet'); -if ~isempty(response2.error_type) || ... - ~strcmpi(response2.results.msg_category, 'warning') +if isempty(response2.error_type) && ... + ~isempty(response2.results.msg_category) && ... + strcmpi(response2.results.msg_category, 'success') errors{end + 1} = ... 'Example 2 failed to detect an incorrect spreadsheet file.'; end @@ -58,12 +50,6 @@ 'schema_string', data.schemaText, ... 'spreadsheet_string', data.spreadsheetText, ... 'expand_defs', 'on', ... - 'has_column_names', 'on', ... - 'column_1_input', data.labelPrefix, ... - 'column_1_check', 'on', ... - 'column_3_input', data.descPrefix, ... - 'column_3_check', 'on', ... - 'column_4_input', '', ... 'column_4_check', 'on'); response3 = webwrite(servicesUrl, request3, options); response3 = jsondecode(response3); @@ -79,12 +65,6 @@ 'schema_string', data.schemaText, ... 'spreadsheet_string', data.spreadsheetText, ... 'expand_defs', 'on', ... - 'has_column_names', 'on', ... - 'column_1_input', data.labelPrefix, ... - 'column_1_check', 'on', ... - 'column_3_input', data.descPrefix, ... - 'column_3_check', 'on', ... - 'column_4_input', '', ... 'column_4_check', 'on'); response4 = webwrite(servicesUrl, request4, options); response4 = jsondecode(response4); diff --git a/hedcode/matlab_scripts/web_services/testStringServices.m b/hedcode/matlab_scripts/web_services/testStringServices.m index e2830272..c7825242 100644 --- a/hedcode/matlab_scripts/web_services/testStringServices.m +++ b/hedcode/matlab_scripts/web_services/testStringServices.m @@ -18,7 +18,7 @@ %% Example 1: Validate valid list of strings using HED URL. request1 = struct('service', 'strings_validate', ... - 'schema_version', '8.0.0', ... + 'schema_version', '8.2.0', ... 'string_list', '', ... 'check_warnings_validate', 'on'); request1.string_list = data.goodStrings; @@ -41,8 +41,8 @@ response2 = jsondecode(response2); outputReport(response2, ... 'Example 2 validating a list of strings with invalid values'); -if ~isempty(response2.error_type) || ... - ~strcmpi(response2.results.msg_category, 'warning') +if isempty(response2.error_type) && ... + strcmpi(response2.results.msg_category, 'success') errors{end + 1} = 'Example 2 failed to detect invalid HED strings.'; end @@ -63,7 +63,7 @@ %% Example 4: Convert valid strings to long using HED version. request4 = struct('service', 'strings_to_long', ... - 'schema_version', '8.0.0', ... + 'schema_version', '8.2.0', ... 'string_list', ''); request4.string_list = data.goodStrings; response4 = webwrite(servicesUrl, request4, options);