v0.5.1

IMPORTANT: This is the last release that is compatible with Bioconductor v3.0 and 3.1!

This release is NOT compatible with Bioconductor 3.2!

The most recent version of Bioconductor (v3.2, released October 14th, 2015) "depreciates" the SummarizedExperiment class and breaks its functionality.

All future versions of JunctionSeq will be created to be compatible only with the newer version of Bioconductor. If you are still using older versions of R or Bioconductor, you will have to use this release.

It can be installed with the command:

install.packages("JunctionSeq_0.5.1.tar.gz", type="source", repos=NULL);

v0.4.23

Minor bugfixes and improvements. Fixed minor bugs related to multivariate modelling. Added multivariate modelling section to the manual.

The recommended installation method is to execute the following command in R:

source("http://hartleys.github.io/JunctionSeq/install/JunctionSeq.install.R");

Manual installation is described in the JunctionSeq FAQ. Note that in either case RTools is required to install in windows.

v0.4.19

Major update to visualization tools, user manual, documentation, and available options.

Most of the largest changes are to the visualization tools. Splice junctions are now drawn nested inside one another using hyperbolic curves. Coloring and margins have also been adjusted. Much of the text included in all figures now auto-fit to the available space. Some text will also stagger or tilt if necessary to preserve readability.

Most colors can now be adjusted using the "colorList" parameter. More will be added in future updates.

The new recommended installation method is to execute the following command in R:

source("http://hartleys.github.io/JunctionSeq/install/JunctionSeq.install.R");

Manual installation is described in the JunctionSeq FAQ. Note that in either case RTools is required to install in windows.

Early testing release

JunctionSeq is still under substantial development. This release is not intended for general use.

Test release (Early Alpha)

This is a test release of an early version of JunctionSeq. It is NOT intended for production use.