Specify hlarp as a requirement

[tavinathanson]

No description provided.

[armish]

@rleonid: can you remind me what was the issue with the biokepi's hlarp again? Should we just run within the pipeline instead of dealing with these external uses?

[tavinathanson]

@armish since Discohorts supports any pipeline, I don't think we can rely on the pipeline running hlarp. I haven't had issues running it locally; I'm curious what the issues are that you're referring to?

[rleonid]

This one ?

[armish]

@rleonid: oh - I remember that hack! But does the version in the biokepi any different than the one that is currently on the dev channel and installed via opam?

@tavinathanson: was just thinking that it might be much more convenient to just append |> Bfx.hlarp ... to the pipeline scripts instead of pulling hlarp into the discohorts, but never mind my suggestion if it is not that big of hassle at this point ;)

[tavinathanson]

@armish good point. I could go either way since discohorts is such a collection of hacks right now. Also open to both options working simultaneously.

[rleonid]

@armish If we

1. set extract_alleles to false in the scripts and
2. update the biokepi_tracker branch then we can use the master branch. I'd be happy to do the later, but I'm not certain of what else might break. @ihodes Do you have any idea's?