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phylogenomics 1 #16

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guyleonard opened this issue Jan 18, 2017 · 8 comments
Open

phylogenomics 1 #16

guyleonard opened this issue Jan 18, 2017 · 8 comments

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@guyleonard
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ete3 won't compile Slr
python 3.4 is needed for ete, 3.5 is installed
jmodeltest not installed
trimal not installed
r8s

  • sudo mkdir /usr/include/sys
  • sudo cp --archive /usr/include/errno.h /usr/include/sys/errno.h
  • c'continuousML.h is missing from package
@guyleonard
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apt install perl-doc

@guyleonard
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splitstree4 "-q" like dendroscope

@guyleonard
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Phylonet - /usr/local/bin/execute_jar.sh /usr/local/bin/phylonet.jar > /usr/local/bin/phylonet - as pilon

@guyleonard
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guyleonard commented Jan 18, 2017 •
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julia language
Pkg.add("PhyloNetworks")

must be done in student environment

@guyleonard
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ecceTERRA wouldn't unzip - got a binary from celine

@guyleonard
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cafe wouldn't compile - got a binary from somewhere.

@guyleonard
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phyutils

@guyleonard
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r8s from marina, slightly older version than available on sourceforge

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@guyleonard