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- 🍎 Mac OSX 10.14 Homebrew installer instructions are found here
- 🐧 Linux / BSD / Unix platform instructions for from-source installs are found here
- 📃 Specific Mac OSX from-source installation instructions are found here
- 📎 Caveats for the unsupported Windows 10 platform users are explained here
We provide the following links to documentation on the core features and functionality of this application:
- RNA secondary structure visualization. Generate arc diagrams comparing up to three secondary structures using color and transparency. Also includes an export tool allowing generated images to be saved to disk for later use.
- Statistics comparing multiple predicted structures. Given a reference structure, compare multiple predictions on the same sequence by calculating statistics including number of true positives, false positives, false negatives, sensitivity, selectivity, and positive values. Also generates ROC plots and allows exporting of computed statistics in plain text format.
- Full CT file viewer with highlighing. View CT files, with color coding, without leaving RNAStructViz.
- Limited radial layout viewer. View a selected version of the radial layout for a structure.
- Customization options and UI themes.Fine tune many aspects of the RNAStructViz user interface. Users withaccessibility needs (in particular, those with color contrast needs) can tweak most of the colors used in the application, including using especially contrasting (or non-contrasting) color choices in the UI.
Bug reports, feature requests, and general support inquiries may be posted in the GitHub issues threads which we track for the project. The developers and our gtDMMB group (contact [email protected]) as a whole will try to keep up with the requests users submit and archive here. Any requests for missing, or confusing documentation, associated with our current WIKI site should also be posted as a new issue in this forum or reported by contacting one of the core developers listed in the footer information on this page.
RNAStructViz has been developed by the Georgia Tech Research Group in Discrete Mathematics and Molecular Biology (gtDMMB) directed by Professor Christine Heitsch (current credits and citations). All communication about running our software, including instantiating bug reports, feature requests, wiki edits, and general inquiries, is logged via our GitHub issues page. Please view the detailed instructions before posting a new issue about support requests.
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