mac-conda.yml

on:
  push:
    branches:
    - main
  pull-request:
    branches:
    - main
  workflow_dispatch:

name: OSX ARM64 and Conda

env:
  GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
  R_REMOTES_NO_ERRORS_FROM_WARNINGS: true

jobs:
  test-pkg:
    runs-on: macOS-14
    name: testing conda

    steps:

      - uses: actions/checkout@v4
          
      - uses: conda-incubator/setup-miniconda@v3
        with:
          use-mamba: true
          miniconda-version: "latest"
          channels: conda-forge,defaults,bioconda
          channel-priority: true
          activate-environment: foo
          architecture: arm64
      
      - name: Bash
        shell: bash -el {0}
        run: |
          conda install -c r r-biocmanager r-remotes
          
      - name: Install Rhdf5lib from source
        shell: bash -el {0}
        run: |
          mkdir ${{ runner.temp }}/R-lib
          R CMD INSTALL --library=${{ runner.temp }}/R-lib ${{ github.workspace }}
        working-directory: ${{ runner.temp }}