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Table of Contents
Module 0: [[Authors|Authors]] | [[Citation|Citation]] | [[Syntax|Syntax]] | [[Intro to AWS|Intro-to-AWS-Cloud-Computing]] | [[Log into AWS|Logging-into-Amazon-Cloud]] | [[Unix|Unix-Bootcamp]] | [[Environment|Environment]] | [[Resources|Resources]]
Module 1: [[Installation|Installation]] | [[Reference Genomes|Reference-Genome]] | [[Annotations|Annotation]] | [[Indexing|Indexing]] | [[Data|RNAseq-Data]] | [[Data QC|PreAlignment-QC]]
Module 2: [[Adapter Trim|Adapter-Trim]] | [[Alignment|Alignment]] | [[IGV|IGV-Tutorial]] | [[Alignment Visualization|PostAlignment-Visualization]] | [[Alignment QC|PostAlignment-QC]]
Module 3: [[Expression|Expression]] | [[Differential Expression|Differential-Expression]] | [[DE Visualization|DE-Visualization]]
Module 4: [[Alignment Free - Kallisto|Kallisto]]
Module 5: [[Ref Guided|Reference-Guided-Transcript-Assembly]] | [[De novo|de-novo-Transcript-Assembly]] | [[Merging|Transcript-Assembly-Merge]] | [[Differential Splicing|Differential-Splicing]] | [[Splicing Visualization|Transcript-Assembly-Visualization]]
Module 6: [[Trinity|Trinity-Assembly-And-Analysis]]
Module 7: [[Trinotate|Trinotate-Functional-Annotation]]
Appendix: [[Saving Results|Saving-Your-Results]] | [[Abbreviations|Abbreviations]] | [[Lectures|Lectures]] | [[Practical Exercise Solutions|Solutions]] | [[Integrated Assignment|Integrated-Assignment]] | [[Proposed Improvements|Proposed-Improvements]] | [[AWS Setup|AWS-Setup]]