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further edits to deprecation notice
add notice about old wiki being deprecated
fix typo
make alignment free its own module and updated TOC, footer, etc.
add reference to previous versions of the course
fixed minor typos/formatting
organize logos into table
adding cbw and cshl acknowledge
Updated Home (markdown)
make new module titles consistent
more navigation fixes
minor fix
update toc
add Kallisto to TOC
update navigation
update main table of contents