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Rootstock 2023 11 07 #33

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merged 3 commits into from
Nov 7, 2023
Merged

Rootstock 2023 11 07 #33

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8c1a803
Improve DOCX environment variable documentation
agitter Aug 14, 2023
48c7d75
environment: upgrade manubot
dhimmel Sep 28, 2023
5bc73df
Merge branch 'main' of https://github.com/manubot/rootstock into root…
miltondp Nov 7, 2023
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2 changes: 2 additions & 0 deletions USAGE.md
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Expand Up @@ -322,6 +322,8 @@ metadata:
csl: https://github.com/citation-style-language/styles/raw/906cd6d43d0c136190ecfbb12f6af0ca794e3c5b/peerj.csl
```

Instructions for generating additional manuscript output formats such as DOCX can be found in [`build/README.md`](build/README.md).

## Spellchecking

When the `SPELLCHECK` environment variable is `true`, the pandoc [spellcheck filter](https://github.com/pandoc/lua-filters/tree/master/spellcheck) is run.
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15 changes: 13 additions & 2 deletions build/README.md
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Expand Up @@ -7,8 +7,19 @@ However, setting the `BUILD_PDF` environment variable to `false` will suppress P
For example, run local builds using the command `BUILD_PDF=false bash build/build.sh`.

To build a DOCX file of the manuscript, set the `BUILD_DOCX` environment variable to `true`.
For example, use the command `BUILD_DOCX=true bash build/build.sh`.
To export DOCX for all CI builds, set an environment variable (see docs for [GitHub Actions](https://help.github.com/en/actions/automating-your-workflow-with-github-actions/using-environment-variables)).
For example, use the command `BUILD_DOCX=true bash build/build.sh` locally.
To export DOCX for all CI builds, set an environment variable in the CI configuration file.
For GitHub Actions, set the variable in `.github\workflows\manubot.yaml` (see [docs](https://help.github.com/en/actions/automating-your-workflow-with-github-actions/using-environment-variables)):

```yaml
name: Manubot
env:
BUILD_DOCX: true
```

To generate a single DOCX output of the latest manuscript with GitHub Actions, click the "Actions" tab at the top of the repository.
Select the "Manubot" workflow, then the "Run workflow" button and check "generate DOCX output" before clicking the green "Run workflow" button.

Currently, equation numbers via `pandoc-eqnos` are not supported for DOCX output.

Format conversion is done using [Pandoc](https://pandoc.org/MANUAL.html).
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2 changes: 1 addition & 1 deletion build/environment.yml
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Expand Up @@ -21,7 +21,7 @@ dependencies:
- pip:
- cffi==1.15.0
- errorhandler==2.0.1
- git+https://github.com/manubot/manubot@d4242ffa4194e4a13a68c5f6466feff559d3f9d5
- git+https://github.com/manubot/manubot@6e6f6a5aac381120faf3ef02e594b5babc77da2b
- isbnlib==3.10.10
- opentimestamps-client==0.7.1
- opentimestamps==0.4.3
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