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scanpy ImportError #5

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Souhatifour opened this issue Dec 20, 2023 · 0 comments

Souhatifour commented Dec 20, 2023

If an ImportError with the message "symbol not found in flat namespace ‘_H5Lget_info’" is encountered when trying to use the 'tables' library, it suggests that the library might not be installed in the correct location (the virtual environment that was created to install BuDDI) like in my case, I had to install scanpy in tis specific .venv folder:
.venv % env HDF5_DIR=/opt/homebrew/opt/hdf5 pip3 install tables

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