diff --git a/.gitignore b/.gitignore
index e8a96926..fb4862e0 100644
--- a/.gitignore
+++ b/.gitignore
@@ -23,4 +23,5 @@ report.*
*~
/test-results/
/playwright-report/
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\ No newline at end of file
diff --git a/e2e/assets/example-spec-expected.png b/e2e/assets/example-spec-expected.png
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diff --git a/e2e/assets/example-spec.json b/e2e/assets/example-spec.json
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- "name": "Pig",
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- "start": 1199,
- "end": 1200,
- "base": "Y"
- },
- {
- "name": "Dog",
- "pos": 1200,
- "start": 1200,
- "end": 1201,
- "base": "L"
- },
- {
- "name": "Human",
- "pos": 1200,
- "start": 1200,
- "end": 1201,
- "base": "L"
- },
- {
- "name": "Cynomolgus monkey",
- "pos": 1200,
- "start": 1200,
- "end": 1201,
- "base": "L"
- },
- {
- "name": "Rhesus macaque",
- "pos": 1200,
- "start": 1200,
- "end": 1201,
- "base": "L"
- },
- {
- "name": "Mouse",
- "pos": 1200,
- "start": 1200,
- "end": 1201,
- "base": "L"
- },
- {
- "name": "Rabit",
- "pos": 1200,
- "start": 1200,
- "end": 1201,
- "base": "L"
- },
- {
- "name": "Rat",
- "pos": 1200,
- "start": 1200,
- "end": 1201,
- "base": "L"
- },
- {
- "name": "Pig",
- "pos": 1200,
- "start": 1200,
- "end": 1201,
- "base": "L"
- },
- {
- "name": "Dog",
- "pos": 1201,
- "start": 1201,
- "end": 1202,
- "base": "R"
- },
- {
- "name": "Human",
- "pos": 1201,
- "start": 1201,
- "end": 1202,
- "base": "R"
- },
- {
- "name": "Cynomolgus monkey",
- "pos": 1201,
- "start": 1201,
- "end": 1202,
- "base": "R"
- },
- {
- "name": "Rhesus macaque",
- "pos": 1201,
- "start": 1201,
- "end": 1202,
- "base": "R"
- },
- {
- "name": "Mouse",
- "pos": 1201,
- "start": 1201,
- "end": 1202,
- "base": "R"
- },
- {
- "name": "Rabit",
- "pos": 1201,
- "start": 1201,
- "end": 1202,
- "base": "R"
- },
- {
- "name": "Rat",
- "pos": 1201,
- "start": 1201,
- "end": 1202,
- "base": "R"
- },
- {
- "name": "Pig",
- "pos": 1201,
- "start": 1201,
- "end": 1202,
- "base": "R"
- },
- {
- "name": "Dog",
- "pos": 1202,
- "start": 1202,
- "end": 1203,
- "base": "V"
- },
- {
- "name": "Human",
- "pos": 1202,
- "start": 1202,
- "end": 1203,
- "base": "V"
- },
- {
- "name": "Cynomolgus monkey",
- "pos": 1202,
- "start": 1202,
- "end": 1203,
- "base": "V"
- },
- {
- "name": "Rhesus macaque",
- "pos": 1202,
- "start": 1202,
- "end": 1203,
- "base": "V"
- },
- {
- "name": "Mouse",
- "pos": 1202,
- "start": 1202,
- "end": 1203,
- "base": "V"
- },
- {
- "name": "Rabit",
- "pos": 1202,
- "start": 1202,
- "end": 1203,
- "base": "V"
- },
- {
- "name": "Rat",
- "pos": 1202,
- "start": 1202,
- "end": 1203,
- "base": "V"
- },
- {
- "name": "Pig",
- "pos": 1202,
- "start": 1202,
- "end": 1203,
- "base": "A"
- },
- {
- "name": "Dog",
- "pos": 1203,
- "start": 1203,
- "end": 1204,
- "base": "A"
- },
- {
- "name": "Human",
- "pos": 1203,
- "start": 1203,
- "end": 1204,
- "base": "A"
- },
- {
- "name": "Cynomolgus monkey",
- "pos": 1203,
- "start": 1203,
- "end": 1204,
- "base": "A"
- },
- {
- "name": "Rhesus macaque",
- "pos": 1203,
- "start": 1203,
- "end": 1204,
- "base": "A"
- },
- {
- "name": "Mouse",
- "pos": 1203,
- "start": 1203,
- "end": 1204,
- "base": "A"
- },
- {
- "name": "Rabit",
- "pos": 1203,
- "start": 1203,
- "end": 1204,
- "base": "A"
- },
- {
- "name": "Rat",
- "pos": 1203,
- "start": 1203,
- "end": 1204,
- "base": "A"
- },
- {
- "name": "Pig",
- "pos": 1203,
- "start": 1203,
- "end": 1204,
- "base": "A"
- },
- {
- "name": "Dog",
- "pos": 1204,
- "start": 1204,
- "end": 1205,
- "base": "P"
- },
- {
- "name": "Human",
- "pos": 1204,
- "start": 1204,
- "end": 1205,
- "base": "P"
- },
- {
- "name": "Cynomolgus monkey",
- "pos": 1204,
- "start": 1204,
- "end": 1205,
- "base": "P"
- },
- {
- "name": "Rhesus macaque",
- "pos": 1204,
- "start": 1204,
- "end": 1205,
- "base": "P"
- },
- {
- "name": "Mouse",
- "pos": 1204,
- "start": 1204,
- "end": 1205,
- "base": "P"
- },
- {
- "name": "Rabit",
- "pos": 1204,
- "start": 1204,
- "end": 1205,
- "base": "P"
- },
- {
- "name": "Rat",
- "pos": 1204,
- "start": 1204,
- "end": 1205,
- "base": "P"
- },
- {
- "name": "Pig",
- "pos": 1204,
- "start": 1204,
- "end": 1205,
- "base": "P"
- },
- {
- "name": "Dog",
- "pos": 1205,
- "start": 1205,
- "end": 1206,
- "base": "P"
- },
- {
- "name": "Human",
- "pos": 1205,
- "start": 1205,
- "end": 1206,
- "base": "Q"
- },
- {
- "name": "Cynomolgus monkey",
- "pos": 1205,
- "start": 1205,
- "end": 1206,
- "base": "Q"
- },
- {
- "name": "Rhesus macaque",
- "pos": 1205,
- "start": 1205,
- "end": 1206,
- "base": "Q"
- },
- {
- "name": "Mouse",
- "pos": 1205,
- "start": 1205,
- "end": 1206,
- "base": "P"
- },
- {
- "name": "Rabit",
- "pos": 1205,
- "start": 1205,
- "end": 1206,
- "base": "P"
- },
- {
- "name": "Rat",
- "pos": 1205,
- "start": 1205,
- "end": 1206,
- "base": "P"
- },
- {
- "name": "Pig",
- "pos": 1205,
- "start": 1205,
- "end": 1206,
- "base": "A"
- },
- {
- "name": "Dog",
- "pos": 1206,
- "start": 1206,
- "end": 1207,
- "base": "S"
- },
- {
- "name": "Human",
- "pos": 1206,
- "start": 1206,
- "end": 1207,
- "base": "S"
- },
- {
- "name": "Cynomolgus monkey",
- "pos": 1206,
- "start": 1206,
- "end": 1207,
- "base": "S"
- },
- {
- "name": "Rhesus macaque",
- "pos": 1206,
- "start": 1206,
- "end": 1207,
- "base": "S"
- },
- {
- "name": "Mouse",
- "pos": 1206,
- "start": 1206,
- "end": 1207,
- "base": "S"
- },
- {
- "name": "Rabit",
- "pos": 1206,
- "start": 1206,
- "end": 1207,
- "base": "G"
- },
- {
- "name": "Rat",
- "pos": 1206,
- "start": 1206,
- "end": 1207,
- "base": "S"
- },
- {
- "name": "Pig",
- "pos": 1206,
- "start": 1206,
- "end": 1207,
- "base": "S"
- },
- {
- "name": "Dog",
- "pos": 1207,
- "start": 1207,
- "end": 1208,
- "base": "S"
- },
- {
- "name": "Human",
- "pos": 1207,
- "start": 1207,
- "end": 1208,
- "base": "S"
- },
- {
- "name": "Cynomolgus monkey",
- "pos": 1207,
- "start": 1207,
- "end": 1208,
- "base": "S"
- },
- {
- "name": "Rhesus macaque",
- "pos": 1207,
- "start": 1207,
- "end": 1208,
- "base": "S"
- },
- {
- "name": "Mouse",
- "pos": 1207,
- "start": 1207,
- "end": 1208,
- "base": "S"
- },
- {
- "name": "Rabit",
- "pos": 1207,
- "start": 1207,
- "end": 1208,
- "base": "R"
- },
- {
- "name": "Rat",
- "pos": 1207,
- "start": 1207,
- "end": 1208,
- "base": "S"
- },
- {
- "name": "Pig",
- "pos": 1207,
- "start": 1207,
- "end": 1208,
- "base": "S"
- },
- {
- "name": "Dog",
- "pos": 1208,
- "start": 1208,
- "end": 1209,
- "base": "E"
- },
- {
- "name": "Human",
- "pos": 1208,
- "start": 1208,
- "end": 1209,
- "base": "E"
- },
- {
- "name": "Cynomolgus monkey",
- "pos": 1208,
- "start": 1208,
- "end": 1209,
- "base": "E"
- },
- {
- "name": "Rhesus macaque",
- "pos": 1208,
- "start": 1208,
- "end": 1209,
- "base": "E"
- },
- {
- "name": "Mouse",
- "pos": 1208,
- "start": 1208,
- "end": 1209,
- "base": "E"
- },
- {
- "name": "Rabit",
- "pos": 1208,
- "start": 1208,
- "end": 1209,
- "base": "E"
- },
- {
- "name": "Rat",
- "pos": 1208,
- "start": 1208,
- "end": 1209,
- "base": "E"
- },
- {
- "name": "Pig",
- "pos": 1208,
- "start": 1208,
- "end": 1209,
- "base": "D"
- },
- {
- "name": "Dog",
- "pos": 1209,
- "start": 1209,
- "end": 1210,
- "base": "F"
- },
- {
- "name": "Human",
- "pos": 1209,
- "start": 1209,
- "end": 1210,
- "base": "F"
- },
- {
- "name": "Cynomolgus monkey",
- "pos": 1209,
- "start": 1209,
- "end": 1210,
- "base": "F"
- },
- {
- "name": "Rhesus macaque",
- "pos": 1209,
- "start": 1209,
- "end": 1210,
- "base": "F"
- },
- {
- "name": "Mouse",
- "pos": 1209,
- "start": 1209,
- "end": 1210,
- "base": "F"
- },
- {
- "name": "Rabit",
- "pos": 1209,
- "start": 1209,
- "end": 1210,
- "base": "F"
- },
- {
- "name": "Rat",
- "pos": 1209,
- "start": 1209,
- "end": 1210,
- "base": "F"
- },
- {
- "name": "Pig",
- "pos": 1209,
- "start": 1209,
- "end": 1210,
- "base": "L"
- },
- {
- "name": "Dog",
- "pos": 1210,
- "start": 1210,
- "end": 1211,
- "base": "I"
- },
- {
- "name": "Human",
- "pos": 1210,
- "start": 1210,
- "end": 1211,
- "base": "I"
- },
- {
- "name": "Cynomolgus monkey",
- "pos": 1210,
- "start": 1210,
- "end": 1211,
- "base": "I"
- },
- {
- "name": "Rhesus macaque",
- "pos": 1210,
- "start": 1210,
- "end": 1211,
- "base": "I"
- },
- {
- "name": "Mouse",
- "pos": 1210,
- "start": 1210,
- "end": 1211,
- "base": "I"
- },
- {
- "name": "Rabit",
- "pos": 1210,
- "start": 1210,
- "end": 1211,
- "base": "T"
- },
- {
- "name": "Rat",
- "pos": 1210,
- "start": 1210,
- "end": 1211,
- "base": "I"
- },
- {
- "name": "Pig",
- "pos": 1210,
- "start": 1210,
- "end": 1211,
- "base": "T"
- },
- {
- "name": "Dog",
- "pos": 1211,
- "start": 1211,
- "end": 1212,
- "base": "G"
- },
- {
- "name": "Human",
- "pos": 1211,
- "start": 1211,
- "end": 1212,
- "base": "G"
- },
- {
- "name": "Cynomolgus monkey",
- "pos": 1211,
- "start": 1211,
- "end": 1212,
- "base": "G"
- },
- {
- "name": "Rhesus macaque",
- "pos": 1211,
- "start": 1211,
- "end": 1212,
- "base": "G"
- },
- {
- "name": "Mouse",
- "pos": 1211,
- "start": 1211,
- "end": 1212,
- "base": "G"
- },
- {
- "name": "Rabit",
- "pos": 1211,
- "start": 1211,
- "end": 1212,
- "base": "T"
- },
- {
- "name": "Rat",
- "pos": 1211,
- "start": 1211,
- "end": 1212,
- "base": "G"
- },
- {
- "name": "Pig",
- "pos": 1211,
- "start": 1211,
- "end": 1212,
- "base": "G"
- },
- {
- "name": "Dog",
- "pos": 1212,
- "start": 1212,
- "end": 1213,
- "base": "A"
- },
- {
- "name": "Human",
- "pos": 1212,
- "start": 1212,
- "end": 1213,
- "base": "A"
- },
- {
- "name": "Cynomolgus monkey",
- "pos": 1212,
- "start": 1212,
- "end": 1213,
- "base": "A"
- },
- {
- "name": "Rhesus macaque",
- "pos": 1212,
- "start": 1212,
- "end": 1213,
- "base": "A"
- },
- {
- "name": "Mouse",
- "pos": 1212,
- "start": 1212,
- "end": 1213,
- "base": "A"
- },
- {
- "name": "Rabit",
- "pos": 1212,
- "start": 1212,
- "end": 1213,
- "base": "A"
- },
- {
- "name": "Rat",
- "pos": 1212,
- "start": 1212,
- "end": 1213,
- "base": "A"
- },
- {
- "name": "Pig",
- "pos": 1212,
- "start": 1212,
- "end": 1213,
- "base": "A"
- }
- ],
- "type": "json",
- "genomicFields": [
- "pos"
- ],
- "sampleLength": 99999
- },
- "tracks": [
- {
- "mark": "rect"
- },
- {
- "mark": "text",
- "x": {
- "field": "start",
- "type": "genomic"
- },
- "xe": {
- "field": "end",
- "type": "genomic"
- },
- "color": {
- "value": "black"
- },
- "size": {
- "value": 12
- },
- "visibility": [
- {
- "measure": "zoomLevel",
- "target": "track",
- "threshold": 15,
- "operation": "LT",
- "transitionPadding": 100
- }
- ]
- }
- ],
- "x": {
- "field": "pos",
- "type": "genomic",
- "axis": "bottom"
- },
- "row": {
- "field": "name",
- "type": "nominal",
- "legend": true
- },
- "color": {
- "field": "base",
- "type": "nominal",
- "range": [
- "#d60000",
- "#018700",
- "#b500ff",
- "#05acc6",
- "#97ff00",
- "#ffa52f",
- "#ff8ec8",
- "#79525e",
- "#00fdcf",
- "#afa5ff",
- "#93ac83",
- "#9a6900",
- "#366962",
- "#d3008c",
- "#fdf490",
- "#c86e66",
- "#9ee2ff",
- "#00c846",
- "#a877ac",
- "#b8ba01"
- ],
- "legend": false
- },
- "stroke": {
- "value": "white"
- },
- "strokeWidth": {
- "value": 0
- },
- "text": {
- "field": "base",
- "type": "nominal"
- },
- "width": 400,
- "height": 177
- }
- ]
- }
- ]
-}
\ No newline at end of file
diff --git a/e2e/performance.spec.ts b/e2e/performance.spec.ts
deleted file mode 100644
index d024cb91..00000000
--- a/e2e/performance.spec.ts
+++ /dev/null
@@ -1,58 +0,0 @@
-import { test, expect, type Page, Locator } from '@playwright/test';
-import { changeEditorSpec, delay, checkScreenshotUntilMatches} from './utils';
-import * as fs from 'fs';
-
-test.beforeEach(async ({ page, context }) => {
- // Enable clipboard permissions. This is needed to copy the spec to the clipboard in the chromium browser.
- await context.grantPermissions(['clipboard-read', 'clipboard-write']);
- await page.goto('/');
-});
-
-test('Measure zoom time', async ({ page, browser }, testInfo) => {
- // This test can take a while to run, so we set the timeout to 60 seconds
- test.setTimeout(60000); // 60 seconds
-
- // Get the spec we want to test and paste it into the editor
- const jsonString = fs.readFileSync('./e2e/assets/example-spec.json', 'utf-8');
- await changeEditorSpec(page, jsonString);
-
- // Wait for the visualization to render
- const gosComponent = page.getByLabel('Gosling visualization');
-
- // Uncomment this to see the screenshot of the component in the report
- // const screenshot = await gosComponent.screenshot();
- // await testInfo.attach('gosComponentScreenshot', {
- // body: screenshot,
- // contentType: 'image/png',
- // });
-
- await checkScreenshotUntilMatches(
- gosComponent,
- 'e2e/assets/example-spec-expected.png',
- 10000
- );
-
- // Hover over a track
- await delay(1000);
- const centerTrack: Locator = page.locator('.center-track').first();
- await centerTrack.hover();
-
- // Start timer and zoom in
- const startTime = Date.now();
- const zoomSteps = 15; // Trigger zoomSteps number of zooms
- for (let i = 0; i < zoomSteps; i++) {
- await page.mouse.wheel(0, -1);
- }
- const endTime = Date.now();
- const zoomTime = endTime - startTime;
- console.log(`Zoom time: ${zoomTime}ms`);
-
- const screenshot = await gosComponent.screenshot();
- await testInfo.attach('gosComponentScreenshot', {
- body: screenshot,
- contentType: 'image/png',
- });
-
- // Just make sure the zoom time is less than 9 seconds. This is how long it in CI
- expect(zoomTime).toBeLessThan(9000);
-});
diff --git a/e2e/utils.ts b/e2e/utils.ts
deleted file mode 100644
index a884316d..00000000
--- a/e2e/utils.ts
+++ /dev/null
@@ -1,72 +0,0 @@
-import { type Page, type Locator } from '@playwright/test';
-import { PNG } from 'pngjs';
-import pixelmatch from 'pixelmatch';
-import * as fs from 'fs';
-
-export function delay(time: number) {
- return new Promise(resolve => {
- setTimeout(resolve, time);
- });
-}
-
-/**
- * Compares two PNG files and returns true if they are the same.
- */
-export function isPngSame(newImg: Buffer, oldImg: Buffer) {
- const img1 = PNG.sync.read(newImg);
- const img2 = PNG.sync.read(oldImg);
- // check if the images have the same dimensions
- if (img1.width !== img2.width || img1.height !== img2.height) return false;
-
- const { width, height } = img1;
- const diff = new PNG({ width, height });
- const pixeldifference = pixelmatch(img1.data, img2.data, diff.data, width, height, { threshold: 0.1 });
- // only write to file if there is a difference in the images
- return pixeldifference === 0;
-}
-
-/**
- * This function changes the editor spec by pasting the given JSON string.
- * Make sure to use context.grantPermissions(['clipboard-read', 'clipboard-write']); before calling this function.
- */
-export async function changeEditorSpec(page: Page, jsonString: string) {
- // Copy the spec to the keyboard using the clipboard API
- await page.evaluate(jsonString => {
- navigator.clipboard.writeText(jsonString);
- }, jsonString);
- // click into the text editor
- await page.mouse.click(200, 200);
- // Control+A to select all
- await page
- .getByRole('textbox', { name: 'Editor content;Press Alt+F1 for Accessibility Options.' })
- .press('Control+KeyA');
- // Backspace to delete what is in the text editor
- await page.keyboard.press('Backspace');
-
- await delay(100);
- // Right click to pull up menu
- await page.mouse.click(200, 200, { button: 'right' });
- await delay(100); // this is needed to wait for the context menu to appear
- // Click on the paste button
- await page.getByRole('menuitem', { name: 'Paste' }).click();
-}
-
-/**
- * This function polls until the screenshot of the given component matches the expected screenshot.
- */
-export async function checkScreenshotUntilMatches(component: Locator, expectedScreenshotPath: string, timeout: number) {
- let screenshotMatchesExpected = false;
- let timeElapsed = 0;
- const compImgBuffer = fs.readFileSync(expectedScreenshotPath);
-
- while (!screenshotMatchesExpected && timeElapsed < timeout) {
- const screenshot = await component.screenshot();
-
- screenshotMatchesExpected = isPngSame(screenshot, compImgBuffer);
-
- if (!screenshotMatchesExpected) {
- await delay(50); // wait 10ms before polling again
- timeElapsed += 50;
- }
- }
-}
\ No newline at end of file
diff --git a/editor/example/index.ts b/editor/example/index.ts
index dd914725..aa7a6778 100644
--- a/editor/example/index.ts
+++ b/editor/example/index.ts
@@ -93,7 +93,7 @@ export const ExampleGroups: {
export interface Example {
group: ExampleGroup;
name: string;
- spec: GoslingSpec | string;
+ spec: GoslingSpec;
id?: string;
description?: string;
underDevelopment?: boolean;
diff --git a/package.json b/package.json
index 5fd596b7..0043a6fa 100644
--- a/package.json
+++ b/package.json
@@ -1,165 +1,165 @@
{
- "name": "gosling.js",
- "author": "Sehi L'Yi",
- "version": "0.15.0",
- "license": "MIT",
- "repository": {
- "type": "git",
- "url": "https://github.com/gosling-lang/gosling.js"
+ "name": "gosling.js",
+ "author": "Sehi L'Yi",
+ "version": "0.15.0",
+ "license": "MIT",
+ "repository": {
+ "type": "git",
+ "url": "https://github.com/gosling-lang/gosling.js"
+ },
+ "homepage": "https://gosling-lang.github.io/gosling.js/",
+ "main": "dist/gosling.js",
+ "module": "dist/gosling.js",
+ "types": "dist/src/index.d.ts",
+ "packageManager": "pnpm@8.6.11",
+ "files": [
+ "dist"
+ ],
+ "type": "module",
+ "exports": {
+ ".": {
+ "types": "./dist/src/index.d.ts",
+ "import": "./dist/gosling.js"
},
- "homepage": "https://gosling-lang.github.io/gosling.js/",
- "main": "dist/gosling.js",
- "module": "dist/gosling.js",
- "types": "dist/src/index.d.ts",
- "packageManager": "pnpm@8.6.11",
- "files": [
- "dist"
- ],
- "type": "module",
- "exports": {
- ".": {
- "types": "./dist/src/index.d.ts",
- "import": "./dist/gosling.js"
- },
- "./utils": {
- "types": "./dist/src/exported-utils.d.ts",
- "import": "./dist/utils.js"
- }
- },
- "scripts": {
- "start": "vite --mode editor",
- "start-embed": "vite",
- "build": "run-s build-clear build-types build-lib",
- "build-lib": "vite build --mode lib",
- "build-types": "tsc --emitDeclarationOnly -p tsconfig.build.json",
- "build-editor": "node --max_old_space_size=8192 ./node_modules/vite/bin/vite.js build",
- "build-clear": "rm -rf ./dist",
- "preview": "vite preview",
- "check": "tsc --noEmit",
- "test": "vitest",
- "coverage": "vitest run --coverage",
- "format": "eslint src/ editor/ --fix && prettier 'editor/**/*.css' --write",
- "schema": "node scripts/generate-schemas.mjs",
- "version": "conventional-changelog -p angular -i CHANGELOG.md -s && git add CHANGELOG.md",
- "knip": "knip --config knip.config.json",
- "e2e": "playwright test",
- "preinstall": "npx only-allow pnpm"
- },
- "peerDependencies": {
- "pixi.js": "^6.3.0",
- "react": "^16.6.3 || ^17.0.0 || ^18.0.0",
- "react-dom": "^16.6.3 || ^17.0.0 || ^18.0.0"
- },
- "dependencies": {
- "@gmod/bam": "^1.1.18",
- "@gmod/bbi": "^3.0.1",
- "@gmod/bed": "^2.1.2",
- "@gmod/gff": "^1.3.0",
- "@gmod/tabix": "^1.5.6",
- "@gmod/vcf": "^5.0.10",
- "allotment": "^1.19.0",
- "bezier-js": "4.0.3",
- "buffer": "^6.0.3",
- "css-element-queries": "^1.2.3",
- "d3-array": "^2.5.1",
- "d3-color": "^2.0.0",
- "d3-dsv": "^2.0.0",
- "d3-format": "^3.1.0",
- "d3-scale": "^3.2.1",
- "d3-scale-chromatic": "^2.0.0",
- "d3-shape": "^2.0.0",
- "events": "^3.3.0",
- "fflate": "^0.7.1",
- "generic-filehandle": "^3.0.1",
- "higlass": "^1.13.4",
- "higlass-register": "^0.3.0",
- "higlass-text": "^0.1.1",
- "json-stringify-pretty-compact": "^2.0.0",
- "jspdf": "^2.3.1",
- "lodash-es": "^4.17.21",
- "monaco-editor": "^0.27.0",
- "nanoevents": "^7.0.1",
- "pubsub-js": "^1.9.3",
- "quick-lru": "^6.1.1",
- "rbush": "^3.0.1",
- "stream-browserify": "^3.0.0",
- "threads": "^1.6.4"
- },
- "devDependencies": {
- "@playwright/test": "^1.39.0",
- "@types/bezier-js": "^4.1.0",
- "@types/d3": "^7.4.3",
- "@types/d3-array": "^3.2.1",
- "@types/d3-color": "^3.1.3",
- "@types/d3-drag": "^2.0.0",
- "@types/d3-dsv": "^3.0.1",
- "@types/d3-format": "^3.0.4",
- "@types/d3-scale": "^4.0.8",
- "@types/d3-scale-chromatic": "^3.0.3",
- "@types/d3-selection": "^2.0.0",
- "@types/d3-shape": "^3.1.6",
- "@types/lodash-es": "^4.17.5",
- "@types/node": "^18.6.2",
- "@types/pixelmatch": "^5.2.5",
- "@types/pngjs": "^6.0.3",
- "@types/pubsub-js": "^1.8.2",
- "@types/rbush": "^3.0.0",
- "@types/react": "^18.2.0",
- "@types/react-dom": "^18.2.0",
- "@types/react-resize-detector": "^4.2.0",
- "@types/react-router-dom": "^5.1.6",
- "@typescript-eslint/eslint-plugin": "^5.56.0",
- "@typescript-eslint/parser": "^5.56.0",
- "@vitejs/plugin-react": "^4.1.0",
- "@vitest/coverage-v8": "^0.34.6",
- "ajv": "^6.12.2",
- "c8": "^7.11.2",
- "conventional-changelog-cli": "^2.1.1",
- "d3-drag": "^2.0.0",
- "d3-selection": "^2.0.0",
- "esbuild": "^0.12.25",
- "eslint": "^8.19.0",
- "eslint-config-prettier": "^8.5.0",
- "eslint-plugin-jsx-a11y": "^6.7.1",
- "eslint-plugin-prettier": "^4.2.1",
- "eslint-plugin-react": "^7.30.1",
- "fetch-jsonp": "^1.1.3",
- "jsdom": "^19.0.0",
- "jsoncrush": "^1.1.6",
- "knip": "^2.30.0",
- "npm-run-all": "^4.1.5",
- "pixelmatch": "^5.3.0",
- "pixi.js": "^6.3.0",
- "pngjs": "^7.0.0",
- "prettier": "^2.0.5",
- "react": "^18.2.0",
- "react-dom": "^18.2.0",
- "react-markdown": "^5.0.3",
- "react-monaco-editor": "^0.45.0",
- "react-resize-detector": "^4.2.3",
- "react-router-dom": "^5.2.0",
- "remark-gfm": "^1.0.0",
- "safe-stable-stringify": "^2.4.3",
- "strip-json-comments": "^3.1.1",
- "ts-json-schema-generator": "^1.0.0",
- "typescript": "^5.0.2",
- "vite": "^4.4.11",
- "vitest": "^0.34.6",
- "vitest-canvas-mock": "^0.3.3"
- },
- "resolutions": {
- "slugid": "^3.0.0"
- },
- "browserslist": {
- "production": [
- ">0.2%",
- "not dead",
- "not op_mini all"
- ],
- "development": [
- "last 1 chrome version",
- "last 1 firefox version",
- "last 1 safari version"
- ]
+ "./utils": {
+ "types": "./dist/src/exported-utils.d.ts",
+ "import": "./dist/utils.js"
}
+ },
+ "scripts": {
+ "start": "vite --mode editor",
+ "start-embed": "vite",
+ "build": "run-s build-clear build-types build-lib",
+ "build-lib": "vite build --mode lib",
+ "build-types": "tsc --emitDeclarationOnly -p tsconfig.build.json",
+ "build-editor": "node --max_old_space_size=8192 ./node_modules/vite/bin/vite.js build",
+ "build-clear": "rm -rf ./dist",
+ "preview": "vite preview",
+ "check": "tsc --noEmit",
+ "test": "vitest",
+ "coverage": "vitest run --coverage",
+ "format": "eslint src/ editor/ --fix && prettier 'editor/**/*.css' --write",
+ "schema": "node scripts/generate-schemas.mjs",
+ "version": "conventional-changelog -p angular -i CHANGELOG.md -s && git add CHANGELOG.md",
+ "knip": "knip --config knip.config.json",
+ "preinstall": "npx only-allow pnpm",
+ "test-ct": "playwright test -c playwright-ct.config.ts"
+ },
+ "peerDependencies": {
+ "pixi.js": "^6.3.0",
+ "react": "^16.6.3 || ^17.0.0 || ^18.0.0",
+ "react-dom": "^16.6.3 || ^17.0.0 || ^18.0.0"
+ },
+ "dependencies": {
+ "@gmod/bam": "^1.1.18",
+ "@gmod/bbi": "^3.0.1",
+ "@gmod/bed": "^2.1.2",
+ "@gmod/gff": "^1.3.0",
+ "@gmod/tabix": "^1.5.6",
+ "@gmod/vcf": "^5.0.10",
+ "allotment": "^1.19.0",
+ "bezier-js": "4.0.3",
+ "buffer": "^6.0.3",
+ "css-element-queries": "^1.2.3",
+ "d3-array": "^2.5.1",
+ "d3-color": "^2.0.0",
+ "d3-dsv": "^2.0.0",
+ "d3-format": "^3.1.0",
+ "d3-scale": "^3.2.1",
+ "d3-scale-chromatic": "^2.0.0",
+ "d3-shape": "^2.0.0",
+ "events": "^3.3.0",
+ "fflate": "^0.7.1",
+ "generic-filehandle": "^3.0.1",
+ "higlass": "^1.13.4",
+ "higlass-register": "^0.3.0",
+ "higlass-text": "^0.1.1",
+ "json-stringify-pretty-compact": "^2.0.0",
+ "jspdf": "^2.3.1",
+ "lodash-es": "^4.17.21",
+ "monaco-editor": "^0.27.0",
+ "nanoevents": "^7.0.1",
+ "pubsub-js": "^1.9.3",
+ "quick-lru": "^6.1.1",
+ "rbush": "^3.0.1",
+ "stream-browserify": "^3.0.0",
+ "threads": "^1.6.4"
+ },
+ "devDependencies": {
+ "@playwright/experimental-ct-react": "^1.41.1",
+ "@types/bezier-js": "^4.1.0",
+ "@types/d3": "^7.4.3",
+ "@types/d3-array": "^3.2.1",
+ "@types/d3-color": "^3.1.3",
+ "@types/d3-drag": "^2.0.0",
+ "@types/d3-dsv": "^3.0.1",
+ "@types/d3-format": "^3.0.4",
+ "@types/d3-scale": "^4.0.8",
+ "@types/d3-scale-chromatic": "^3.0.3",
+ "@types/d3-selection": "^2.0.0",
+ "@types/d3-shape": "^3.1.6",
+ "@types/lodash-es": "^4.17.5",
+ "@types/node": "^18.6.2",
+ "@types/pixelmatch": "^5.2.5",
+ "@types/pngjs": "^6.0.3",
+ "@types/pubsub-js": "^1.8.2",
+ "@types/rbush": "^3.0.0",
+ "@types/react": "^18.2.0",
+ "@types/react-dom": "^18.2.0",
+ "@types/react-resize-detector": "^4.2.0",
+ "@types/react-router-dom": "^5.1.6",
+ "@typescript-eslint/eslint-plugin": "^5.56.0",
+ "@typescript-eslint/parser": "^5.56.0",
+ "@vitejs/plugin-react": "^4.1.0",
+ "@vitest/coverage-v8": "^0.34.6",
+ "ajv": "^6.12.2",
+ "c8": "^7.11.2",
+ "conventional-changelog-cli": "^2.1.1",
+ "d3-drag": "^2.0.0",
+ "d3-selection": "^2.0.0",
+ "esbuild": "^0.12.25",
+ "eslint": "^8.19.0",
+ "eslint-config-prettier": "^8.5.0",
+ "eslint-plugin-jsx-a11y": "^6.7.1",
+ "eslint-plugin-prettier": "^4.2.1",
+ "eslint-plugin-react": "^7.30.1",
+ "fetch-jsonp": "^1.1.3",
+ "jsdom": "^19.0.0",
+ "jsoncrush": "^1.1.6",
+ "knip": "^2.30.0",
+ "npm-run-all": "^4.1.5",
+ "pixelmatch": "^5.3.0",
+ "pixi.js": "^6.3.0",
+ "pngjs": "^7.0.0",
+ "prettier": "^2.0.5",
+ "react": "^18.2.0",
+ "react-dom": "^18.2.0",
+ "react-markdown": "^5.0.3",
+ "react-monaco-editor": "^0.45.0",
+ "react-resize-detector": "^4.2.3",
+ "react-router-dom": "^5.2.0",
+ "remark-gfm": "^1.0.0",
+ "safe-stable-stringify": "^2.4.3",
+ "strip-json-comments": "^3.1.1",
+ "ts-json-schema-generator": "^1.0.0",
+ "typescript": "^5.0.2",
+ "vite": "^4.4.11",
+ "vitest": "^0.34.6",
+ "vitest-canvas-mock": "^0.3.3"
+ },
+ "resolutions": {
+ "slugid": "^3.0.0"
+ },
+ "browserslist": {
+ "production": [
+ ">0.2%",
+ "not dead",
+ "not op_mini all"
+ ],
+ "development": [
+ "last 1 chrome version",
+ "last 1 firefox version",
+ "last 1 safari version"
+ ]
+ }
}
diff --git a/playwright.config.ts b/playwright-ct.config.ts
similarity index 52%
rename from playwright.config.ts
rename to playwright-ct.config.ts
index 7f920fd6..1fbc116b 100644
--- a/playwright.config.ts
+++ b/playwright-ct.config.ts
@@ -1,16 +1,15 @@
-import { defineConfig, devices } from '@playwright/test';
-
-/**
- * Read environment variables from file.
- * https://github.com/motdotla/dotenv
- */
-// require('dotenv').config();
+import { defineConfig, devices } from '@playwright/experimental-ct-react';
/**
* See https://playwright.dev/docs/test-configuration.
*/
export default defineConfig({
- testDir: './e2e',
+ testDir: './src/core/',
+ testMatch: '*.test.tsx',
+ /* The base directory, relative to the config file, for snapshot files created with toMatchSnapshot and toHaveScreenshot. */
+ snapshotDir: './__snapshots__',
+ /* Maximum time one test can run for. */
+ timeout: 10 * 1000,
/* Run tests in files in parallel */
fullyParallel: true,
/* Fail the build on CI if you accidentally left test.only in the source code. */
@@ -23,11 +22,15 @@ export default defineConfig({
reporter: 'html',
/* Shared settings for all the projects below. See https://playwright.dev/docs/api/class-testoptions. */
use: {
- /* Base URL to use in actions like `await page.goto('/')`. */
- baseURL: 'http://localhost:5173',
-
/* Collect trace when retrying the failed test. See https://playwright.dev/docs/trace-viewer */
trace: 'on-first-retry',
+
+ /* Port to use for Playwright component endpoint. */
+ ctPort: 3100,
+ ctViteConfig: {
+ /* Vite config to use for the component server. */
+ configFile: './vite.config.js',
+ },
},
/* Configure projects for major browsers */
@@ -36,42 +39,13 @@ export default defineConfig({
name: 'chromium',
use: { ...devices['Desktop Chrome'] },
},
-
// {
// name: 'firefox',
// use: { ...devices['Desktop Firefox'] },
// },
-
// {
// name: 'webkit',
// use: { ...devices['Desktop Safari'] },
// },
-
- /* Test against mobile viewports. */
- // {
- // name: 'Mobile Chrome',
- // use: { ...devices['Pixel 5'] },
- // },
- // {
- // name: 'Mobile Safari',
- // use: { ...devices['iPhone 12'] },
- // },
-
- /* Test against branded browsers. */
- // {
- // name: 'Microsoft Edge',
- // use: { ...devices['Desktop Edge'], channel: 'msedge' },
- // },
- // {
- // name: 'Google Chrome',
- // use: { ...devices['Desktop Chrome'], channel: 'chrome' },
- // },
],
-
- /* Run your local dev server before starting the tests */
- webServer: {
- command: 'pnpm start',
- url: 'http://localhost:5173/',
- reuseExistingServer: !process.env.CI,
- },
});
diff --git a/playwright/index.html b/playwright/index.html
new file mode 100644
index 00000000..610ddf8a
--- /dev/null
+++ b/playwright/index.html
@@ -0,0 +1,12 @@
+
+
+
+
+
+ Testing Page
+
+
+
+
+
+
diff --git a/playwright/index.tsx b/playwright/index.tsx
new file mode 100644
index 00000000..ac6de14b
--- /dev/null
+++ b/playwright/index.tsx
@@ -0,0 +1,2 @@
+// Import styles, initialize component theme here.
+// import '../src/common.css';
diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml
index 653e9d9f..0cfcca04 100644
--- a/pnpm-lock.yaml
+++ b/pnpm-lock.yaml
@@ -109,9 +109,9 @@ dependencies:
version: 1.7.0
devDependencies:
- '@playwright/test':
- specifier: ^1.39.0
- version: 1.40.1
+ '@playwright/experimental-ct-react':
+ specifier: ^1.41.1
+ version: 1.41.1(@types/node@18.6.2)(vite@4.4.11)
'@types/bezier-js':
specifier: ^4.1.0
version: 4.1.0
@@ -1403,12 +1403,41 @@ packages:
dev: true
optional: true
- /@playwright/test@1.40.1:
- resolution: {integrity: sha512-EaaawMTOeEItCRvfmkI9v6rBkF1svM8wjl/YPRrg2N2Wmp+4qJYkWtJsbew1szfKKDm6fPLy4YAanBhIlf9dWw==}
+ /@playwright/experimental-ct-core@1.41.1(@types/node@18.6.2):
+ resolution: {integrity: sha512-d7PxESV29x6W9RYs0mhkXmxr+6FfTbg2Tm/WJZlhgbIP+OLv79uJ8hl8ERsiBBFtH88sR+WmxHBMiZRpfpa6Fw==}
engines: {node: '>=16'}
hasBin: true
dependencies:
- playwright: 1.40.1
+ playwright: 1.41.1
+ playwright-core: 1.41.1
+ vite: 4.5.2(@types/node@18.6.2)
+ transitivePeerDependencies:
+ - '@types/node'
+ - less
+ - lightningcss
+ - sass
+ - stylus
+ - sugarss
+ - terser
+ dev: true
+
+ /@playwright/experimental-ct-react@1.41.1(@types/node@18.6.2)(vite@4.4.11):
+ resolution: {integrity: sha512-Ht04RKD/4J69EPHOR4iAWtsOkkqswxonkcEEhniTNflGn30SoPyNww72LJECDrls+7AJayflJf4qe/cK1Ao/ug==}
+ engines: {node: '>=16'}
+ hasBin: true
+ dependencies:
+ '@playwright/experimental-ct-core': 1.41.1(@types/node@18.6.2)
+ '@vitejs/plugin-react': 4.1.0(vite@4.4.11)
+ transitivePeerDependencies:
+ - '@types/node'
+ - less
+ - lightningcss
+ - sass
+ - stylus
+ - sugarss
+ - supports-color
+ - terser
+ - vite
dev: true
/@sinclair/typebox@0.27.8:
@@ -5691,18 +5720,18 @@ packages:
pathe: 1.1.1
dev: true
- /playwright-core@1.40.1:
- resolution: {integrity: sha512-+hkOycxPiV534c4HhpfX6yrlawqVUzITRKwHAmYfmsVreltEl6fAZJ3DPfLMOODw0H3s1Itd6MDCWmP1fl/QvQ==}
+ /playwright-core@1.41.1:
+ resolution: {integrity: sha512-/KPO5DzXSMlxSX77wy+HihKGOunh3hqndhqeo/nMxfigiKzogn8kfL0ZBDu0L1RKgan5XHCPmn6zXd2NUJgjhg==}
engines: {node: '>=16'}
hasBin: true
dev: true
- /playwright@1.40.1:
- resolution: {integrity: sha512-2eHI7IioIpQ0bS1Ovg/HszsN/XKNwEG1kbzSDDmADpclKc7CyqkHw7Mg2JCz/bbCxg25QUPcjksoMW7JcIFQmw==}
+ /playwright@1.41.1:
+ resolution: {integrity: sha512-gdZAWG97oUnbBdRL3GuBvX3nDDmUOuqzV/D24dytqlKt+eI5KbwusluZRGljx1YoJKZ2NRPaeWiFTeGZO7SosQ==}
engines: {node: '>=16'}
hasBin: true
dependencies:
- playwright-core: 1.40.1
+ playwright-core: 1.41.1
optionalDependencies:
fsevents: 2.3.2
dev: true
@@ -7208,6 +7237,42 @@ packages:
fsevents: 2.3.3
dev: true
+ /vite@4.5.2(@types/node@18.6.2):
+ resolution: {integrity: sha512-tBCZBNSBbHQkaGyhGCDUGqeo2ph8Fstyp6FMSvTtsXeZSPpSMGlviAOav2hxVTqFcx8Hj/twtWKsMJXNY0xI8w==}
+ engines: {node: ^14.18.0 || >=16.0.0}
+ hasBin: true
+ peerDependencies:
+ '@types/node': '>= 14'
+ less: '*'
+ lightningcss: ^1.21.0
+ sass: '*'
+ stylus: '*'
+ sugarss: '*'
+ terser: ^5.4.0
+ peerDependenciesMeta:
+ '@types/node':
+ optional: true
+ less:
+ optional: true
+ lightningcss:
+ optional: true
+ sass:
+ optional: true
+ stylus:
+ optional: true
+ sugarss:
+ optional: true
+ terser:
+ optional: true
+ dependencies:
+ '@types/node': 18.6.2
+ esbuild: 0.18.20
+ postcss: 8.4.32
+ rollup: 3.29.4
+ optionalDependencies:
+ fsevents: 2.3.3
+ dev: true
+
/vitest-canvas-mock@0.3.3(vitest@0.34.6):
resolution: {integrity: sha512-3P968tYBpqYyzzOaVtqnmYjqbe13576/fkjbDEJSfQAkHtC5/UjuRHOhFEN/ZV5HVZIkaROBUWgazDKJ+Ibw+Q==}
peerDependencies:
diff --git a/src/core/gosling-component.test.tsx b/src/core/gosling-component.test.tsx
new file mode 100644
index 00000000..d0da78bd
--- /dev/null
+++ b/src/core/gosling-component.test.tsx
@@ -0,0 +1,71 @@
+import { test, expect } from '@playwright/experimental-ct-react';
+import { GoslingComponent } from './gosling-component';
+import { spec as JSON_SPEC_VISUAL_ENCODING } from '../../editor/example/spec/visual-encoding';
+import { JsonExampleSpecs } from 'editor/example/json-spec';
+import React from 'react';
+
+test.use({ viewport: { width: 1000, height: 1000 } });
+
+async function zoom(direction: 'in' | 'out', page: any, steps = 15) {
+ const zoomDirection = direction === 'in' ? -1 : 1; // Zoom in or out
+ for (let i = 0; i < steps; i++) {
+ await page.mouse.wheel(0, zoomDirection * 50);
+ }
+}
+/**
+ * This tests the zooming performance of Gosling. It zooms in and out 15 times and records the time it takes to zoom.
+ */
+test('Zoom visual encoding', async ({ mount, page }) => {
+ test.setTimeout(60000); // 60 seconds
+ await mount();
+ await page.waitForLoadState('networkidle');
+ await page.waitForTimeout(5000);
+
+ const centerTrack = page.locator('.center-track').first();
+ await centerTrack.hover();
+
+ // Start timer and zoom in
+ const zoomTimes: number[] = [];
+ for (let i = 0; i < 15; i++) {
+ const startTime = Date.now();
+ await zoom('in', page);
+ const endTime = Date.now();
+ const zoomTime = endTime - startTime;
+ zoomTimes.push(zoomTime);
+ console.warn(`Zoom time ${i + 1}: ${zoomTime}ms`);
+ await zoom('out', page);
+ }
+ console.warn('Minimum:', Math.min(...zoomTimes));
+ expect(Math.min(...zoomTimes)).toBeLessThan(330);
+
+ // const screenshot = await component.screenshot();
+ // await testInfo.attach('gosComponentScreenshot', {
+ // body: screenshot,
+ // contentType: 'image/png'
+ // });
+});
+
+test('Zoom multiple sequence alignment', async ({ mount, page }) => {
+ test.setTimeout(60000); // 60 seconds
+ await mount();
+ await page.waitForLoadState('networkidle');
+ await page.waitForTimeout(5000);
+
+ // Hover over the third track
+ const centerTracks = page.locator('.center-track');
+ const thirdCenterTrack = centerTracks.nth(2);
+ await thirdCenterTrack.hover();
+
+ const zoomTimes: number[] = [];
+ for (let i = 0; i < 10; i++) {
+ const startTime = Date.now();
+ await zoom('in', page, 5);
+ const endTime = Date.now();
+ const zoomTime = endTime - startTime;
+ zoomTimes.push(zoomTime);
+ console.warn(`Zoom time ${i + 1}: ${zoomTime}ms`);
+ await zoom('out', page);
+ }
+ console.warn('Minimum:', Math.min(...zoomTimes));
+ expect(Math.min(...zoomTimes)).toBeLessThan(500);
+});
diff --git a/tsconfig.json b/tsconfig.json
index 593ccc3f..a99a47df 100644
--- a/tsconfig.json
+++ b/tsconfig.json
@@ -41,7 +41,7 @@
"src/index.ts",
"editor/index.tsx",
],
- "include": ["src", "src/**/*.d.ts", "editor"],
+ "include": ["src", "src/**/*.d.ts", "editor", "e2e"],
"exclude": [
"node_modules",
"public",
diff --git a/vite.config.js b/vite.config.js
index 8693651a..a33be702 100644
--- a/vite.config.js
+++ b/vite.config.js
@@ -116,7 +116,7 @@ const dev = defineConfig({
const testing = defineConfig({
resolve: { alias },
test: {
- exclude: ['./node_modules/**', './dist/**', './e2e/**'],
+ exclude: ['./node_modules/**', './dist/**', '**/*.test.tsx'],
globals: true,
setupFiles: [path.resolve(__dirname, './scripts/setup-vitest.js')],
environment: 'jsdom',