From 3f793ddec0dbd9c74bc74b378345166c08927622 Mon Sep 17 00:00:00 2001 From: pichuan Date: Wed, 1 Nov 2023 09:42:44 -0700 Subject: [PATCH] Add links to README. PiperOrigin-RevId: 578547180 --- README.md | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 769cca02..f7ca72fc 100644 --- a/README.md +++ b/README.md @@ -11,7 +11,7 @@ a standard VCF or gVCF file. DeepVariant supports germline variant-calling in diploid organisms. -* NGS (Illumina) data for either a +* NGS (Illumina or Element) data for either a [whole genome](docs/deepvariant-case-study.md) or [whole exome](docs/deepvariant-exome-case-study.md). * [RNA-seq Case Study](docs/deepvariant-rnaseq-case-study.md) for Illumina @@ -25,6 +25,11 @@ DeepVariant supports germline variant-calling in diploid organisms. [hybrid case study](docs/deepvariant-hybrid-case-study.md). * Oxford Nanopore R9.4.1 data by using [PEPPER-DeepVariant](https://github.com/kishwarshafin/pepper). +* To map using a pangenome to improve accuracy, use this [vg case study] + (docs/deepvariant-vg-case-study.md). +* Complete Genomics data: [T7 case study](docs/deepvariant-complete-t7-case-study.md); + [G400 case study](docs/deepvariant-complete-g400-case-study.md) + Please also note: