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DMS-Seq.yml
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name: DMS-Seq
channels:
- defaults
- conda-forge
- bioconda
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- alsa-lib=1.2.9=hd590300_0
- asttokens=2.2.1=pyhd8ed1ab_0
- attr=2.5.1=h166bdaf_1
- backcall=0.2.0=pyhd3eb1b0_0
- backports=1.1=pyhd3eb1b0_0
- backports.functools_lru_cache=1.6.5=pyhd8ed1ab_0
- biopython=1.81=py38h1de0b5d_0
- blas=1.1=openblas
- bowtie2=2.5.1=py38he00c5e5_2
- brotli=1.0.9=h5eee18b_7
- brotli-bin=1.0.9=h5eee18b_7
- brotlipy=0.7.0=py38h27cfd23_1003
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.19.1=hd590300_0
- ca-certificates=2023.08.22=h06a4308_0
- cairo=1.16.0=hb05425b_5
- certifi=2023.7.22=py38h06a4308_0
- cffi=1.15.1=py38h5eee18b_3
- charset-normalizer=3.2.0=pyhd8ed1ab_0
- click=8.1.7=unix_pyh707e725_0
- coloredlogs=15.0.1=py38h06a4308_1
- colormath=3.0.0=py_2
- comm=0.1.4=pyhd8ed1ab_0
- contourpy=1.1.0=py38h7f3f72f_0
- cryptography=41.0.3=py38hcdda232_0
- cutadapt=4.4=py38he5da3d1_1
- cycler=0.11.0=pyhd3eb1b0_0
- dbus=1.13.18=hb2f20db_0
- debugpy=1.6.8=py38h17151c0_0
- decorator=5.1.1=pyhd3eb1b0_0
- dnaio=0.10.0=py38he5da3d1_3
- executing=1.2.0=pyhd8ed1ab_0
- expat=2.5.0=hcb278e6_1
- fastqc=0.12.1=hdfd78af_0
- font-ttf-dejavu-sans-mono=2.37=hd3eb1b0_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h8b1ccd4_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-anaconda=1=h8fa9717_0
- fonts-conda-ecosystem=1=hd3eb1b0_0
- fonttools=4.42.0=py38h01eb140_0
- freetype=2.12.1=h4a9f257_0
- future=0.18.3=py38h06a4308_0
- gdbm=1.18=hd4cb3f1_4
- gettext=0.21.1=h27087fc_0
- giflib=5.2.1=h5eee18b_3
- glib=2.76.4=hfc55251_0
- glib-tools=2.76.4=hfc55251_0
- graphite2=1.3.14=h295c915_1
- gst-plugins-base=1.22.5=hf7dbed1_0
- gstreamer=1.22.5=h98fc4e7_0
- harfbuzz=7.3.0=hdb3a94d_0
- htslib=1.17=h81da01d_2
- humanfriendly=10.0=py38h06a4308_1
- icu=72.1=hcb278e6_0
- idna=3.4=py38h06a4308_0
- importlib-metadata=6.8.0=pyha770c72_0
- importlib-resources=6.0.1=pyhd8ed1ab_0
- importlib_metadata=6.8.0=hd8ed1ab_0
- importlib_resources=6.0.1=pyhd8ed1ab_0
- ipykernel=6.25.1=pyh71e2992_0
- ipython=8.12.2=py38h06a4308_0
- isa-l=2.30.0=h7f8727e_0
- jedi=0.19.0=pyhd8ed1ab_0
- jinja2=3.1.2=py38h06a4308_0
- jupyter_client=8.3.0=pyhd8ed1ab_0
- jupyter_core=5.3.0=py38h06a4308_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py38h6a678d5_0
- krb5=1.21.1=h659d440_0
- lame=3.100=h7b6447c_0
- lcms2=2.15=haa2dc70_1
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libblas=3.9.0=17_linux64_openblas
- libbrotlicommon=1.0.9=h5eee18b_7
- libbrotlidec=1.0.9=h5eee18b_7
- libbrotlienc=1.0.9=h5eee18b_7
- libcap=2.69=h0f662aa_0
- libcblas=3.9.0=17_linux64_openblas
- libclang=15.0.7=default_h7634d5b_3
- libclang13=15.0.7=default_h9986a30_3
- libcups=2.3.3=h4637d8d_4
- libcurl=8.2.1=hca28451_0
- libdeflate=1.18=h0b41bf4_0
- libedit=3.1.20221030=h5eee18b_0
- libev=4.33=h7f8727e_1
- libevent=2.1.12=hdbd6064_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.4=h6a678d5_0
- libflac=1.4.3=h59595ed_0
- libgcc-ng=13.1.0=he5830b7_0
- libgcrypt=1.10.1=h166bdaf_0
- libgfortran-ng=13.1.0=h69a702a_0
- libgfortran5=13.1.0=h15d22d2_0
- libglib=2.76.4=hebfc3b9_0
- libgomp=13.1.0=he5830b7_0
- libgpg-error=1.47=h71f35ed_0
- libhwloc=2.9.2=nocuda_h7313eea_1008
- libiconv=1.17=h166bdaf_0
- libjpeg-turbo=2.1.5.1=h0b41bf4_0
- liblapack=3.9.0=17_linux64_openblas
- libllvm15=15.0.7=h5cf9203_3
- libnghttp2=1.52.0=h2d74bed_1
- libnsl=2.0.0=h5eee18b_0
- libogg=1.3.5=h27cfd23_1
- libopenblas=0.3.23=pthreads_h80387f5_0
- libopus=1.3.1=h7b6447c_0
- libpng=1.6.39=h5eee18b_0
- libpq=15.4=hfc447b1_0
- libsndfile=1.2.2=hbc2eb40_0
- libsodium=1.0.18=h7b6447c_0
- libsqlite=3.42.0=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-ng=13.1.0=hfd8a6a1_0
- libsystemd0=254=h3516f8a_0
- libtiff=4.5.1=h8b53f26_0
- libuuid=2.38.1=h0b41bf4_0
- libvorbis=1.3.7=h7b6447c_0
- libwebp-base=1.3.1=hd590300_0
- libxcb=1.15=h7f8727e_0
- libxkbcommon=1.5.0=h5d7e998_3
- libxml2=2.11.5=h0d562d8_0
- libzlib=1.2.13=hd590300_5
- lz4-c=1.9.4=h6a678d5_0
- lzstring=1.0.4=py_1001
- markdown=3.4.4=pyhd8ed1ab_0
- markdown-it-py=3.0.0=pyhd8ed1ab_0
- markupsafe=2.1.3=py38h01eb140_1
- matplotlib=3.7.2=py38h578d9bd_0
- matplotlib-base=3.7.2=py38hf5b0b65_0
- matplotlib-inline=0.1.6=py38h06a4308_0
- mdurl=0.1.0=py38h06a4308_0
- mpg123=1.31.3=hcb278e6_0
- multiqc=1.16=pyhdfd78af_0
- munkres=1.1.4=py_0
- mysql-common=8.0.33=hf1915f5_2
- mysql-libs=8.0.33=hca2cd23_2
- ncurses=6.4=h6a678d5_0
- nest-asyncio=1.5.6=py38h06a4308_0
- networkx=3.1=py38h06a4308_0
- nspr=4.35=h6a678d5_0
- nss=3.89.1=h6a678d5_0
- numpy=1.24.4=py38h59b608b_0
- openblas=0.3.23=pthreads_h855a84d_0
- openjdk=20.0.0=h8e330f5_0
- openjpeg=2.5.0=hfec8fc6_2
- openssl=3.1.3=hd590300_0
- packaging=23.1=pyhd8ed1ab_0
- pandas=2.0.3=py38h01efb38_1
- parso=0.8.3=pyhd3eb1b0_0
- pbzip2=1.1.13=0
- pcre2=10.40=hc3806b6_0
- perl=5.32.1=0_h5eee18b_perl5
- pexpect=4.8.0=py38_0
- pickleshare=0.7.5=py38_1000
- pigz=2.6=h27cfd23_0
- pillow=10.0.0=py38h885162f_0
- pip=23.2.1=py38h06a4308_0
- pixman=0.40.0=h7f8727e_1
- platformdirs=3.10.0=pyhd8ed1ab_0
- plotly=5.16.0=pyhd8ed1ab_0
- ply=3.11=py38_0
- pooch=1.7.0=pyha770c72_3
- prompt-toolkit=3.0.39=pyha770c72_0
- psutil=5.9.5=py38h1de0b5d_0
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pulseaudio-client=16.1=hb77b528_4
- pure_eval=0.2.2=pyhd3eb1b0_0
- pycparser=2.21=pyhd3eb1b0_0
- pygments=2.16.1=pyhd8ed1ab_0
- pyopenssl=23.2.0=py38h06a4308_0
- pyparsing=3.0.9=py38h06a4308_0
- pyqt=5.15.9=py38hffdaa6c_4
- pyqt5-sip=12.12.2=py38h17151c0_4
- pysam=0.21.0=py38h15b938a_1
- pysocks=1.7.1=py38h06a4308_0
- python=3.8.17=h955ad1f_0
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python-isal=1.2.0=py38h01eb140_0
- python-tzdata=2023.3=pyhd3eb1b0_0
- python_abi=3.8=2_cp38
- pytz=2023.3=pyhd8ed1ab_0
- pyyaml=6.0.1=py38h01eb140_1
- pyzmq=25.1.1=py38h509eb50_0
- qt-main=5.15.8=h7fe3ca9_15
- readline=8.2=h5eee18b_0
- requests=2.31.0=py38h06a4308_0
- rich=13.5.3=pyhd8ed1ab_0
- rich-click=1.6.1=pyhd8ed1ab_0
- rnastructure=6.3=hdbdd923_3
- rocm-smi=5.6.0=h59595ed_1
- samtools=1.17=hd87286a_1
- scipy=1.10.1=py38h32ae08f_1
- seaborn=0.12.2=py38h06a4308_0
- setuptools=68.0.0=py38h06a4308_0
- simplejson=3.19.1=py38h01eb140_1
- sip=6.7.11=py38h17151c0_0
- six=1.16.0=pyhd3eb1b0_1
- spectra=0.0.11=py_1
- sqlite=3.42.0=h2c6b66d_0
- stack_data=0.6.2=pyhd8ed1ab_0
- tbb=2021.10.0=h00ab1b0_0
- tenacity=8.2.3=pyhd8ed1ab_0
- tk=8.6.12=h1ccaba5_0
- toml=0.10.2=pyhd3eb1b0_0
- tomli=2.0.1=py38h06a4308_0
- tornado=6.3.2=py38h5eee18b_0
- traitlets=5.9.0=pyhd8ed1ab_0
- trim-galore=0.6.10=hdfd78af_0
- typing-extensions=4.7.1=py38h06a4308_0
- typing_extensions=4.7.1=py38h06a4308_0
- unicodedata2=15.0.0=py38h5eee18b_0
- urllib3=1.26.16=py38h06a4308_0
- viennarna=2.6.3=py38pl5321h5cf8b27_0
- wcwidth=0.2.6=pyhd8ed1ab_0
- wheel=0.41.1=pyhd8ed1ab_0
- xcb-util=0.4.0=hd590300_1
- xcb-util-image=0.4.0=h8ee46fc_1
- xcb-util-keysyms=0.4.0=h8ee46fc_1
- xcb-util-renderutil=0.3.9=hd590300_1
- xcb-util-wm=0.4.1=h8ee46fc_1
- xkeyboard-config=2.39=hd590300_0
- xopen=1.7.0=py38h578d9bd_2
- xorg-fixesproto=5.0=h7f98852_1002
- xorg-inputproto=2.3.2=h7f98852_1002
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.1.1=hd590300_0
- xorg-libsm=1.2.4=h7391055_0
- xorg-libx11=1.8.6=h8ee46fc_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxfixes=5.0.3=h7f98852_1004
- xorg-libxi=1.7.10=h7f98852_0
- xorg-libxrender=0.9.11=hd590300_0
- xorg-libxt=1.3.0=hd590300_1
- xorg-libxtst=1.2.3=h7f98852_1002
- xorg-recordproto=1.14.2=h7f98852_1002
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xf86vidmodeproto=2.3.1=h7f98852_1002
- xorg-xproto=7.0.31=h27cfd23_1007
- xz=5.4.2=h5eee18b_0
- yaml=0.2.5=h7b6447c_0
- zeromq=4.3.4=h2531618_0
- zipp=3.16.2=pyhd8ed1ab_0
- zlib=1.2.13=hd590300_5
- zstandard=0.19.0=py38h5eee18b_0
- zstd=1.5.5=hc292b87_0
prefix: /khayyam/vishvak/miniconda3/envs/DMS-Seq