diff --git a/.golangci.yml b/.golangci.yml
index c6190a00a99d..b5488ad81305 100644
--- a/.golangci.yml
+++ b/.golangci.yml
@@ -160,7 +160,11 @@ issues:
       linters: [staticcheck]
       text: "SA1019: c.cfg.Run.ShowStats is deprecated: use Output.ShowStats instead."
     - path: pkg/commands/config.go
+      linters: [staticcheck]
       text: "SA1019: cfg.Run.UseDefaultSkipDirs is deprecated: use Issues.UseDefaultExcludeDirs instead."
+    - path: pkg/commands/linters.go
+      linters: [staticcheck]
+      text: "SA1019: c.cfg.Run.UseDefaultSkipDirs is deprecated: use Issues.UseDefaultExcludeDirs instead."
 
     # Deprecated linter options.
     - path: pkg/golinters/errcheck.go
diff --git a/pkg/commands/linters.go b/pkg/commands/linters.go
index 61ed0f22f27b..e9c155186852 100644
--- a/pkg/commands/linters.go
+++ b/pkg/commands/linters.go
@@ -59,6 +59,13 @@ func newLintersCommand(logger logutils.Log) *lintersCommand {
 }
 
 func (c *lintersCommand) preRunE(cmd *cobra.Command, _ []string) error {
+	// Hack to hide deprecation messages related to `--skip-dirs-use-default`:
+	// Flags are not bound then the default values, defined only through flags, are not applied.
+	// In this command, linters information are the only requirements, i.e. it don't need flag values.
+	//
+	// TODO(ldez) add an option (check deprecation) to `Loader.Load()` but this require a dedicated PR.
+	c.cfg.Run.UseDefaultSkipDirs = true
+
 	loader := config.NewLoader(c.log.Child(logutils.DebugKeyConfigReader), c.viper, cmd.Flags(), c.opts.LoaderOptions, c.cfg)
 
 	if err := loader.Load(); err != nil {