From b0f947cccb5d75df105508798c19d83dce00d11b Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 1 Apr 2024 16:57:47 +0000
Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/asottile/pyupgrade: v3.15.0 → v3.15.2](https://github.com/asottile/pyupgrade/compare/v3.15.0...v3.15.2)
- [github.com/psf/black: 23.12.1 → 24.3.0](https://github.com/psf/black/compare/23.12.1...24.3.0)
- [github.com/PyCQA/flake8: 6.1.0 → 7.0.0](https://github.com/PyCQA/flake8/compare/6.1.0...7.0.0)
- [github.com/nbQA-dev/nbQA: 1.7.1 → 1.8.5](https://github.com/nbQA-dev/nbQA/compare/1.7.1...1.8.5)
- [github.com/kynan/nbstripout: 0.6.1 → 0.7.1](https://github.com/kynan/nbstripout/compare/0.6.1...0.7.1)
---
 .pre-commit-config.yaml | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index fd9f1e3..2c9de4c 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -16,7 +16,7 @@ repos:
       - id: debug-statements
       - id: requirements-txt-fixer
   - repo: https://github.com/asottile/pyupgrade
-    rev: 'v3.15.0'
+    rev: 'v3.15.2'
     hooks:
       - id: pyupgrade
         args:
@@ -28,17 +28,17 @@ repos:
         args:
           - --profile=black
   - repo: https://github.com/psf/black
-    rev: '23.12.1'
+    rev: '24.3.0'
     hooks:
       - id: black
   - repo: https://github.com/PyCQA/flake8
-    rev: '6.1.0'
+    rev: '7.0.0'
     hooks:
       - id: flake8
         args:
           - --max-line-length=100
   - repo: https://github.com/nbQA-dev/nbQA
-    rev: 1.7.1
+    rev: 1.8.5
     hooks:
       - id: nbqa-pyupgrade
         args:
@@ -51,7 +51,7 @@ repos:
         args:
           - --nbqa-mutate
   - repo: https://github.com/kynan/nbstripout
-    rev: 0.6.1
+    rev: 0.7.1
     hooks:
       - id: nbstripout
         args:

From 17bc58da5bbd017c3b036598cfb9f43ee59d0fa5 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 1 Apr 2024 17:01:04 +0000
Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 notebooks/signac_107_Integration_with_Sacred.ipynb | 6 +++---
 projects/flow.gmx-mtools/src/calc_density.py       | 1 +
 projects/flow.gmx-mtools/src/project.py            | 1 +
 projects/flow.hoomd.lj/src/project.py              | 1 +
 projects/flow.sklearn.init-ParameterGrid/init.py   | 1 +
 5 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/notebooks/signac_107_Integration_with_Sacred.ipynb b/notebooks/signac_107_Integration_with_Sacred.ipynb
index b696a40..4f247bd 100644
--- a/notebooks/signac_107_Integration_with_Sacred.ipynb
+++ b/notebooks/signac_107_Integration_with_Sacred.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "alert-prague",
+   "id": "0",
    "metadata": {},
    "source": [
     "# 1.7 Integration with Sacred\n",
@@ -16,7 +16,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "final-virus",
+   "id": "1",
    "metadata": {},
    "source": [
     "\n",
@@ -39,7 +39,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "registered-margin",
+   "id": "2",
    "metadata": {},
    "source": [
     "Then we can integrate that experiment on a *per job* basis as defined in `project.py` :\n",
diff --git a/projects/flow.gmx-mtools/src/calc_density.py b/projects/flow.gmx-mtools/src/calc_density.py
index 018fc64..22ac814 100644
--- a/projects/flow.gmx-mtools/src/calc_density.py
+++ b/projects/flow.gmx-mtools/src/calc_density.py
@@ -1,4 +1,5 @@
 """Calculates the density of a system over the length of a trajectory"""
+
 import os
 
 import matplotlib
diff --git a/projects/flow.gmx-mtools/src/project.py b/projects/flow.gmx-mtools/src/project.py
index c9a7759..2ee58e2 100644
--- a/projects/flow.gmx-mtools/src/project.py
+++ b/projects/flow.gmx-mtools/src/project.py
@@ -1,4 +1,5 @@
 """Define the project's workflow logic."""
+
 import mbuild as mb
 import signac
 from flow import FlowProject
diff --git a/projects/flow.hoomd.lj/src/project.py b/projects/flow.hoomd.lj/src/project.py
index 009cedc..870458a 100644
--- a/projects/flow.hoomd.lj/src/project.py
+++ b/projects/flow.hoomd.lj/src/project.py
@@ -5,6 +5,7 @@
 
     $ python src/project.py --help
 """
+
 from flow import FlowProject
 
 
diff --git a/projects/flow.sklearn.init-ParameterGrid/init.py b/projects/flow.sklearn.init-ParameterGrid/init.py
index c172a4b..4d2a1b1 100644
--- a/projects/flow.sklearn.init-ParameterGrid/init.py
+++ b/projects/flow.sklearn.init-ParameterGrid/init.py
@@ -4,6 +4,7 @@
 See also:
 https://scikit-learn.org/stable/modules/generated/sklearn.model_selection.RandomizedSearchCV.html
 """
+
 import joblib
 import signac
 from sklearn import datasets, svm