From 59f49ea2132344df168f0115b93f3e8294e98707 Mon Sep 17 00:00:00 2001
From: Corwin Kerr <cbkerr@umich.edu>
Date: Mon, 20 Nov 2023 16:18:54 -0500
Subject: [PATCH 1/3] Fix conditions for compute msd

---
 projects/flow.2D-random-walk/src/project.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/projects/flow.2D-random-walk/src/project.py b/projects/flow.2D-random-walk/src/project.py
index f80bf90..f6047bc 100644
--- a/projects/flow.2D-random-walk/src/project.py
+++ b/projects/flow.2D-random-walk/src/project.py
@@ -125,7 +125,8 @@ def plot_mean_squared_displacement(job):
 
 @agg_analyze_and_plot
 @RandomWalkProject.pre(all_simulated)
-@RandomWalkProject.post.true("msd_analyzed")
+@RandomWalkProject.pre(lambda *jobs: "squared_displacement" in jobs[0].data)
+@RandomWalkProject.post(lambda *jobs: jobs[0].doc.get("msd_analyzed"))
 @RandomWalkProject.operation(aggregator=std_aggregator)
 def compute_mean_squared_displacement(*jobs):
     """Compute and store the mean squared displacement for all std."""

From 464119510e929f2eb40b77545c88eb1bc38d5bec Mon Sep 17 00:00:00 2001
From: Corwin Kerr <cbkerr@umich.edu>
Date: Mon, 20 Nov 2023 16:19:12 -0500
Subject: [PATCH 2/3] Update init settings

---
 projects/flow.2D-random-walk/src/init.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/projects/flow.2D-random-walk/src/init.py b/projects/flow.2D-random-walk/src/init.py
index a594fc3..0ee298b 100644
--- a/projects/flow.2D-random-walk/src/init.py
+++ b/projects/flow.2D-random-walk/src/init.py
@@ -14,9 +14,9 @@
 logger.setLevel(logging.ERROR)
 
 # The standard deviations to use for generating random walk moves
-STANDARD_DEVIATIONS = np.linspace(start=0.1, stop=1, num=20)
+STANDARD_DEVIATIONS = np.linspace(start=0.1, stop=1, num=5)
 NUMBER_REPLICAS = 100
-RUN_STEPS = 5_000
+RUN_STEPS = 10_000
 MAX_SEED = 2**32 - 1
 
 

From 87a6335eacd0ad01f89e8bd273a2f1501dc8de67 Mon Sep 17 00:00:00 2001
From: Corwin Kerr <cbkerr@umich.edu>
Date: Mon, 20 Nov 2023 16:23:06 -0500
Subject: [PATCH 3/3] Use correct flag for verbose option

See line 103 of flow-test.py
---
 projects/run-tests.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/projects/run-tests.sh b/projects/run-tests.sh
index be10094..0a98d9e 100755
--- a/projects/run-tests.sh
+++ b/projects/run-tests.sh
@@ -18,5 +18,5 @@ for PROJECT in `ls -d */`; do
         conda install --yes ${USE_INDEX_CACHE} --file ${REQUIREMENTS_FILE}
         export USE_INDEX_CACHE="--use-index-cache"
     fi
-    python flow-test.py ${PROJECT} -vv --timeout=600 $@
+    python flow-test.py ${PROJECT} -v --timeout=600 $@
 done