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don't add extra dimensions #209

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d-v-b opened this issue Jun 23, 2023 · 1 comment
Closed

don't add extra dimensions #209

d-v-b opened this issue Jun 23, 2023 · 1 comment

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@d-v-b
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d-v-b commented Jun 23, 2023

When I used this tool with a 3D tiff, the resulting zarr arrays had singleton T and C dimensions added. My data is a 3D segmentation image; it has no time axis, and it doesn't have channels. Would it be possible to either refrain from adding extra dimensions or provide a flag to disable this behavior?
@melissalinkert melissalinkert transferred this issue from glencoesoftware/NGFF-Converter Jun 26, 2023
@melissalinkert
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Transferred from NGFF-Converter to bioformats2raw, as NGFF-Converter uses bioformats2raw internally to perform conversion.

Closing as a duplicate of #180. As mentioned there, this isn't possible at the moment, and not something we're likely to implement soon. We'd be happy to look at a pull request if this is a high priority.

@jluethi jluethi mentioned this issue Feb 28, 2024
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@melissalinkert @d-v-b