running aborted

[bonniethesheng]

Hi, I submitted the data to slurm for running on PhyloSift. However, I got:
pplacer: loadlocale.c:130: _nl_intern_locale_data: Assertion cnt < (sizeof (_nl_value_type_LC_TIME) / sizeof (_nl_value_type_LC_TIME[0]))' failed. Aborted pplacer: loadlocale.c:130: _nl_intern_locale_data: Assertion cnt < (sizeof (_nl_value_type_LC_TIME) / sizeof (_nl_value_type_LC_TIME[0]))' failed.
Aborted
pplacer: loadlocale.c:130: _nl_intern_locale_data: Assertion `cnt < (sizeof (_nl_value_type_LC_TIME) / sizeof (_nl_value_type_LC_TIME[0]))' failed.
Aborted

Does anyone know what I can do? Thank you very much!

[gjospin]

Oh strange I’ve never seen that error. I would recommend trying to compile and install pplacer on its own and replacing the copy distributed with PS. That would be in the bin folder inside the phylosift directory.( If you were using a Mac, then you would add the new executable to the osx directory instead). You could add it to your PATH as well. Could it be possible the precompiled version old enough to not like the newer libraries? https://matsen.fhcrc.org/pplacer/

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On Mar 19, 2019, at 11:39 PM, bonniethesheng ***@***.***> wrote: loadlocale.c:130: _nl_intern_locale_data: Assertion `cnt < (sizeof (_nl_value_type_LC_TIME) / sizeof (_nl_value_type_LC_TIME[0]))' failed.