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PhyloSift error running (Can't locate App/Cmd/Setup.pm in @INC) #487

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ghost opened this issue Feb 6, 2018 · 4 comments
Open

PhyloSift error running (Can't locate App/Cmd/Setup.pm in @INC) #487

ghost opened this issue Feb 6, 2018 · 4 comments

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@ghost
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ghost commented Feb 6, 2018

After downloading and unzipping the folder, I ran the first command with the test dataset and having the following error:

[mdimdadi@rameshgoel PhyloSift]$ bin/phylosift all --output=results --paired tutorial_data/HMP_1.fastq.gz tutorial_data/HMP_2.fastq.gz

[mdimdadi@rameshgoel PhyloSift]$ Can't locate App/Cmd/Setup.pm in @inc (@inc contains: /home/mdimdadi/Downloads/PhyloSift/bin/../lib /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at /home/mdimdadi/Downloads/PhyloSift/bin/../lib/Phylosift.pm line 2.
BEGIN failed--compilation aborted at /home/mdimdadi/Downloads/PhyloSift/bin/../lib/Phylosift.pm line 2.
Compilation failed in require at bin/phylosift line 6.
BEGIN failed--compilation aborted at bin/phylosift line 6.

@ghost ghost changed the title PhyloSift error running PhyloSift error running (Can't locate App/Cmd/Setup.pm in @INC) Feb 6, 2018
@LoryBkr
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LoryBkr commented Aug 6, 2019

Hello @mdimdadi,
I have the same issue but I don't know how to fix it. Do you have any idea now ?

@jolespin
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I also have the same error...

@MarcelaHer
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Hi, I also have the same error!
phylosift -h
Can't locate App/Cmd/Setup.pm in @inc (@inc contains: /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 . /gpfs/software/ada/PhyloSift-1.0.0_01/bin/../lib) at /.../PhyloSift-1.0.0_01/bin/../lib/Phylosift.pm line 2.
BEGIN failed--compilation aborted at /../lib/Phylosift.pm line 2.
Compilation failed in require at /.../bin/phylosift line 7.
BEGIN failed--compilation aborted at /.../PhyloSift-1.0.0_01/bin/phylosift line 7.

@jolespin
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This package seems to be dead. The authors haven’t touched the repository in years and key resource files on their website are missing. I would find another option that’s actively maintained.

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