.gitpod.yml

image:
  file: .gitpod.Dockerfile


tasks:
    # If you want to do this globally for all your workspaces, you may build a private docker image with the following script
    # and set that as your default org workspace image. Relevant docs:
    # - https://www.gitpod.io/docs/configure/workspaces/workspace-image#use-a-private-docker-image
    # - https://www.gitpod.io/docs/configure/orgs/policies#default-workspace-image
  - name: Mount a s3 bucket
    before: |
      # Cleanup terminal
      printf "\033[3J\033c\033[3J"

      # You may change these variables as needed
      rclone_section="anons3"
      bucket_name="1000genomes"
      bucket_path="/release"

      # You may use a path outside of `/workspace` directory
      mount_path="$PWD/anons3_1000genomes"
      mkdir -p "${mount_path}"

      # Mount
      mount_flags=(
        --config=$PWD/rclone.conf

        mount
          --daemon # Remove this to debug if any error occurs
          --allow-other
          --async-read
          --vfs-cache-mode=full

        ${rclone_section}:${bucket_name}"${bucket_path}"
        ${mount_path}
      )

      sudo rclone "${mount_flags[@]}"

      printf '# [info]: %s\n' "The public bucket called '${bucket_name}' was mounted on ${mount_path}"