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publications.html
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<!doctype html>
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Publications
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Recent Publications
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<a href="https://www.cell.com/cell/abstract/S0092-8674(24)01021-3">
<img src="img/News/Pub_Zhen.jpg" alt="Zhen-Yuan Lin" class="card-img">
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Proteomics
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Congrats to Mikko Taipale and his team for their Cell <a href="https://www.cell.com/cell/abstract/S0092-8674(24)01021-3">paper</a> where they conducted high-content screens to show widespread protein mislocalization in diverse human disorders. NBCC contributions from Zhen-Yuan Lin (proteomics, pictured).
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<h5 class="small text-muted position-absolute top-100 start-50 translate-middle" style="margin-top: -25px;">September 30, 2024 </h5>
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</a>
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Screening
</h5>
<p class="description">
Congrats to Ben Blencowe and colleagues for their Nature Communications <a href="https://www.nature.com/articles/s41467-024-50399-6">paper</a> describing a high-throughput screen to identify modulators
of neuronal microexons whose splicing is often misregulated in autism. NBCC contributions from the high-throughput screening facility
(Mark Jen, pictured).
</p>
<h5 class="small text-muted">July 27, 2024</h5>
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<a href="https://pubmed.ncbi.nlm.nih.gov/38902237/">
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Multi-Facility
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<p class="description">
Congrats to Daniel Schramek and colleagues for their Nature Communications <a href="https://pubmed.ncbi.nlm.nih.gov/38902237/">paper</a> identifying SCAF1 & USP15 as drivers of pancreatic cancer
through in vivo CRISPR screens. NBCC contributions from the sequencing (Kin Chan & Angeline Zhang, pictured) and flow cytometry facilities. </p>
<h5 class="small text-muted">June 20, 2024</h5>
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<a href="https://www.science.org/doi/10.1126/science.adp5577?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed">
<img src="img/News/Pub_Cas.jpg" alt="Cassandra Wong" class="card-img">
</a>
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<h5>
Proteomics
</h5>
<p class="description">
Congrats to John Rubinstein and colleagues for their Science <a href="https://www.science.org/doi/10.1126/science.adp5577?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed">paper</a> where they used single-particle electron microscopy to obtain a
high-resolution structure of V-ATPase within the native synaptic vesicle membrane. NBCC contributions from Cassandra Wong (pictured)
and Brendon Seale in Proteomics.
</p>
<h5 class="small text-muted">June 20, 2024</h5>
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</a>
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Multi-Facility
</h5>
<p class="description">
Congrats to the Schramek lab on their <a href="https://www.embopress.org/doi/full/10.1038/s44320-024-00032-x">paper</a> in Molecular Systems Biology using genome-wide CRISPR screening to identify regulators of p53 stability.
NBCC contributions from Mike Parsons (Flow), (pictured), Kin Chan (NGS) and Zhen-Yuan Lin (proteomics).
</p>
<h5 class="small text-muted position-absolute top-100 start-50 translate-middle" style="margin-top: -25px;">June 10, 2024 </h5>
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<img src="img/News/Pub_Mel.jpg" alt="machine" class="card-img">
</a>
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<h5>
Screening & Serology
</h5>
<p class="description">
Congrats to Jen Gommerman and colleagues for their work supporting the need for intranasal COVID-19 vaccines in their Mucosal Immunology
<a href="https://www.sciencedirect.com/science/article/pii/S1933021924000047?via%3Dihub">paper</a> looking at breakthrough infections and vaccination. NBCC contributions from the serology team and high-throughput screening facility.
(Melanie Delgado Brand, pictured)
</p>
<h5 class="small text-muted">April 17, 2024</h5>
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<a href="https://www.nature.com/articles/s41586-024-07224-3">
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</a>
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<h5>
Proteomics
</h5>
<p class="description">
Congrats to Mikko Taipale and colleagues for their <a href="https://www.nature.com/articles/s41586-024-07224-3">paper</a> in Nature identifying proteins involved in protein stabilization or degradation.
NBCC contributions from Cassandra Wong (proteomics).
</p>
<h5 class="small text-muted position-absolute top-100 start-50 translate-middle" style="margin-top: -25px;">March 20, 2024</h5>
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<hr>
<h3>
Network Biology Collaborative Centre Publications by the Numbers:
</h3>
<hr>
<h5 class="small">
January 1, 2011 to August 16, 2024
</h5>
<table class="table table-responsive table-striped table-bordered">
<tbody>
<tr>
<td>
Total Publications
</td>
<td>
475
</td>
</tr>
<tr>
<td>
Total in 2024
</td>
<td>
29
</td>
</tr>
<tr>
<td>
Total Citations
</td>
<td>
44,561
</td>
</tr>
<tr>
<td>
H-index
</td>
<td>
101
</td>
</tr>
</tbody>
</table>
<a href="https://scholar.google.com/citations?hl=en&user=CDjBA1AAAAAJ&view_op=list_works&sortby=pubdate">
<i class="bi bi-link-45deg"></i>
NBCC List of Publications and Stats on Google Scholar.
</a>
<br>
<a href="assets/PDF/NBCC Publication List_AUG2024.pdf" download="">
<i class="bi bi-file-earmark-pdf-fill"></i>
List of Publications since 2011.
</a>
<hr>
<h3>
How to Cite
</h3>
<p>
Being acknowledged in publications is important for the long-term sustainability of the NBCC as it is a key funding metric and allows us to
fulfill reporting requirements of granting agencies. How the NBCC gets acknowledged will vary for each individual project.
</p>
<p>
As a guideline, routine analysis that involves technical skill but no development of new methodology or interpretation of data does not
constitute authorship but should be mentioned in the acknowledgement and/or methods section.
</p>
<p>
Authorship <u>is</u> recommended, according to scientific custom, when the staff member makes a substantial contribution to a paper such as helping
to conceive or design the project, providing input critical to the direction of the project, developing advanced techniques for acquiring or analyzing data, and helping to draft or revise the paper (beyond the materials and methods) for intellectual content.
Authorship for staff, when warranted, properly recognizes their intellectual contribution to a manuscript and is important for their career advancement.
</p>
<p>
For further reading, the Association of Biomolecular Resource Facilities (ABRF) has published <a href="https://abrf.org/resources/authorship-guidelines/"><u>authorship guidelines</u></a> for core facility staff.
</p>
<hr>
<h5>
Suggested acknowledgement for each facility:
</h5>
<table class="table-striped table-responsive table-bordered table">
<thead class="table-dark">
<tr>
<th>
Facility
</th>
<th>
Acknowledgement
</th>
</tr>
</thead>
<tbody>
<tr>
<td>
Proteomics
</td>
<td>
The authors wish to thank [staff name] of the Network Biology Collaborative Centre Proteomics Facility (RRID: SCR_025375) at the
Lunenfeld-Tanenbaum Research Institute for [service]. The facility is supported by the Canada Foundation for Innovation and the Ontario Government.
</td>
</tr>
<tr>
<td>
Next-Generation Sequencing
</td>
<td>
The authors wish to thank [staff name] of the Network Biology Collaborative Centre Next-Generation Sequencing Facility (RRID: SCR_025385) at the
Lunenfeld-Tanenbaum Research Institute for [service]. The facility is supported by the Canada Foundation for Innovation and the Ontario Government.
</td>
</tr>
<tr>
<td>
High-Throughput Screening
</td>
<td>
The authors wish to thank [staff name] of the Network Biology Collaborative Centre High-Throughput Screening Facility (RRID: SCR_025390) at the
Lunenfeld-Tanenbaum Research Institute for [service]. The facility is supported by the Canada Foundation for Innovation and the Ontario Government.
</td>
</tr>
<tr>
<td>
High-Content Screening
</td>
<td>
The authors wish to thank [staff name] of the Network Biology Collaborative Centre High-Content Screening Facility (RRID: SCR_025391) at the
Lunenfeld-Tanenbaum Research Institute for [service]. The facility is supported by the Canada Foundation for Innovation and the Ontario Government.
</td>
</tr>
<tr>
<td>
Advanced Imaging
</td>
<td>
The authors wish to thank [staff name] of the Network Biology Collaborative Centre Advanced Imaging Facility (RRID: SCR_025389) at the
Lunenfeld-Tanenbaum Research Institute for [service]. The facility is supported by the Canada Foundation for Innovation and the Ontario Government.
</td>
</tr>
<tr>
<td>
Flow Cytometry
</td>
<td>
The authors wish to thank [staff name] of the Network Biology Collaborative Centre Flow Cytometry Facility (RRID: SCR_025384) at the
Lunenfeld-Tanenbaum Research Institute for [service]. The facility is supported by the Canada Foundation for Innovation and the Ontario Government.
</td>
</tr>
</tbody>
</table>
<hr>
<h6 class="text-center text-muted">
We would love to hear about your successes. Please email a reference or copy of your publication to [email protected].
</h6>
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