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v3.2.2
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@mariabernard mariabernard released this 01 Apr 12:56
· 947 commits to master since this release
v3.2.2
6e7d406

v3.2.2 [2021-04]

Modifications

  • Preprocess: use maxdiffpct instead of maxdiffs in vsearch fastq_mergepairs command line, and recommand 2.17.0 version.
  • DESeq2 :
    • rename tool in DESeq2 visualisation (with s instead of z)
    • improve filter in datatable
    • change color
    • add padj threshold in MAplot
  • ITSx : add organims model option (it was restrict to Fungi, take care of increase computing time
  • OTU affiliation : sort blast affiliations in biom by taxonomy
  • Clusters stat : add precision in HTML
  • Remove chimera : add precision in HTML, and rename table columns names
  • Affiliation Filter : add precision in HTML
  • Various tools:
    • add taxonomic rank consistency between user declaration and input files (reference database, biom)
    • correct typo

Bug fixed

  • DESeq2 visualisation :
    • add intermediates_dir argument in Rscript command
    • debug pie charts color attribution
  • Normalisation : correct bug when calculating number of OTU by sample
  • ITSx : correct stderr scanning
  • Affiliation filter : correct bug in OTU filter by sample and by filter
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