diff --git a/.github/workflows/deploy.yaml b/.github/workflows/deploy.yaml new file mode 100644 index 00000000..6ee5ffeb --- /dev/null +++ b/.github/workflows/deploy.yaml @@ -0,0 +1,55 @@ +name: Deploy Jekyll site to Pages + +on: + push: + branches: ["master"] + +# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages +permissions: + contents: read + pages: write + id-token: write + +# Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued. +# However, do NOT cancel in-progress runs as we want to allow these production deployments to complete. +concurrency: + group: "pages" + cancel-in-progress: false + +jobs: + # Build job + build: + runs-on: ubuntu-latest + steps: + - name: Checkout + uses: actions/checkout@v4 + - name: Setup Ruby + uses: ruby/setup-ruby@v1 + with: + ruby-version: '2.7' + bundler-cache: true # runs 'bundle install' and caches installed gems automatically + - name: Setup Pages + id: pages + uses: actions/configure-pages@v4 + - name: Fetch GO_REFs + run: make _data/gorefs.yaml + - name: Build with Jekyll + # Outputs to the './_site' directory by default + run: bundle exec jekyll build --baseurl "${{ steps.pages.outputs.base_path }}" + env: + JEKYLL_ENV: production + - name: Upload artifact + # Automatically uploads an artifact from the './_site' directory by default + uses: actions/upload-pages-artifact@v3 + + # Deployment job + deploy: + environment: + name: github-pages + url: ${{ steps.deployment.outputs.page_url }} + runs-on: ubuntu-latest + needs: build + steps: + - name: Deploy to GitHub Pages + id: deployment + uses: actions/deploy-pages@v4 diff --git a/_config.yml b/_config.yml index 03c4e370..423a4966 100644 --- a/_config.yml +++ b/_config.yml @@ -31,6 +31,7 @@ exclude: - .idea/ - .gitignore - README.md + - vendor # In GitHub workflows, the ruby/setup-ruby action will install gems here timezone: America/Los_Angeles defaults: diff --git a/_docs/taxon-constraints.md b/_docs/taxon-constraints.md index 3a01ce27..2c8b2044 100644 --- a/_docs/taxon-constraints.md +++ b/_docs/taxon-constraints.md @@ -2,7 +2,7 @@ title: Taxon constraints in the Gene Ontology permalink: /docs/taxon-constraints/ redirect_from: -- /cgi-bin/references.cgi#GO_REF:0000056 +- /cgi-bin/references.cgi --- # Taxon constraints in the Gene Ontology