From 2e459c0def4c28cc8d0a6442c4a7a5c3c60ddb02 Mon Sep 17 00:00:00 2001 From: suzialeksander Date: Wed, 24 Jul 2024 17:42:02 -0600 Subject: [PATCH] Update download-go-annotations.md borders are on --- _docs/download-go-annotations.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/_docs/download-go-annotations.md b/_docs/download-go-annotations.md index 4cc7383c..f4da79de 100644 --- a/_docs/download-go-annotations.md +++ b/_docs/download-go-annotations.md @@ -50,13 +50,13 @@ For all other organisms we recommend downloading annotations from one of the fol * [NCBI RefSeq](https://ftp.ncbi.nlm.nih.gov/genomes/refseq/){:target="blank"}: If your organism has a reference genome assembly in NCBI, GO annotations are available in GAF format through NCBI Gene identifiers. Annotation files are available for all eukaryotic genomes available at NCBI RefSeq. Note that GO annotations are not currently available for archaea, bacteria or viruses. * Start at the [NCBI homepage](https://www.ncbi.nlm.nih.gov/){:target="blank"} * Enter your organism in the search box near the top of the page and click Search, e.g. [Anopheles gambiae](https://www.ncbi.nlm.nih.gov/search/all/?term=Anopheles%20gambiae){:target="blank"} -
NCBI homepage search
+
NCBI homepage search
* Follow the ["Genomes" link](https://www.ncbi.nlm.nih.gov/datasets/genome/?taxon=7165){:target="blank"} -
NCBI Genomes link
+
NCBI Genomes link
* Select the [reference assembly](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_943734735.2/){:target="blank"} at the top of the list; this entry is indicated with a green "reference genome" icon and a GCF identifer listed in the RefSeq column -
NCBI reference assembly
+
NCBI reference assembly
* Click on the [FTP link](https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/943/734/735/GCF_943734735.2_idAnoGambNW_F1_1/){:target="blank"} -
NCBI FTP link to GAF<
+
NCBI FTP link to GAF
* Download the file with the suffix `gene_ontology.gaf.gz`, e.g. `GCF_943734735.2-RS_2023_12_gene_ontology.gaf.gz` ### 3. If you cannot find annotations for your organism for download as described above