autoLIMR 3.0.1

autoLIMR 3.0.0

autoLIMR 2.2.2

Changes for CRAN acceptance
Citation entry changes
Excluded @dontrun examples in functions mcmc_diags() and raftery_diags()
Fixed bugs in function aevar()

autoLIMR 2.2.1

Vignette updates.

autoLIMR 2.2.0

autoLIMR 2.1.1

autoLIMR 2.1.0

autoLIMR 2.0.0

This is a major release adding a range of substantial new features and fixing bugs.

Breaking changes

Brand new features mean some dependencies not previously included. These include coda (>= 0.19.4), LIM (>= 1.4.7), and network (>= 1.18.0)
Roxygen update 7.2.1 -> 7.2.3

New features

Added a NEWS.md file to track changes to the package.

Calculate multiple plausible networks

Added multi_net() function and friends to calculate multiple plausible networks. Friend functions include:
- Starting point functions centralx0() and defaultx0
- Network packing function prepack_fun() and inner functions export_fun(), fmat_fun(), input_fun(), living_fun(), output_fun(), resp_fun()

Markov Chain Monte Carlo (MCMC) Convergence Diagnostics

Added various functions for visual MCMC convergence diagnostics:
- trace_plot()
- dens_plot()
- runmean_plot()
- geweke_plot()
- autocorr_plot()
- mcmc_plots() function seamlessly combines all plots into a single plot output.
Added various functions for statistical MCMC convergence diagnostics:
- summary_diag()
- geweke_diag()
- effsize_diag()
- heidel_diag()
- raftery_diag()
- autocorr_diag()
- mcmc_diags() function returns all statistical MCMC convergence diagnostics in a single list or data frame.

Examples

Added eight example LIM Declaration files for a toy four-node network in inst/example_limfiles directory
- Four weighted network LIM Declaration files (Summer, Spring, Autumn, Winter)
- Four unweighted network LIM Declaration files (Summer, Spring, Autumn, Winter)

Bug fixes

autoGen() - changed file path names to simply "unweighted_limfiles" or "weighted_limfiles"