diff --git a/docs/404.html b/docs/404.html index a9befc4f..da90bddc 100644 --- a/docs/404.html +++ b/docs/404.html @@ -24,7 +24,7 @@ gDRcore - 1.1.20 + 1.1.22 - - - - - -
-
-
-

Define matrix grid positions

- Source: R/combinations-isobolograms.R -
define_matrix_grid_positions.Rd
-
- -
-

Define matrix grid positions

-
- -
-

Usage

- 
define_matrix_grid_positions(conc1, conc2)
-
- -
-

Arguments

-
conc1
-

drug_1 concentration

- - -
conc2
-

drug_2 concentration

- -
-
-

Value

- - -

list with axis grid positions

-
-
-

Details

-

drug_1 is diluted along the rows as the y-axis and -drug_2 is diluted along the columns and will be the x-axis.

-
- -
- - -
- - - - - - - diff --git a/docs/reference/do_skip_step.html b/docs/reference/do_skip_step.html index 69442cdb..0f6c84ca 100644 --- a/docs/reference/do_skip_step.html +++ b/docs/reference/do_skip_step.html @@ -10,7 +10,7 @@ gDRcore - 1.1.20 + 1.1.22 + + + + + +
+
+
+

Retrieve the cell line annotation from the annotated dt input

+ Source: R/add_annotation.R +
get_cellline_annotation_from_dt.Rd
+
+ +
+

Retrieve the cell line annotation from the annotated dt input

+
+ +
+

Usage

+ 
get_cellline_annotation_from_dt(dt)
+
+ +
+

Arguments

+
dt
+

annotated data.table

+ +
+
+

Value

+ + +

data.table with cell line annotation

+
+ +
+

Examples

+ 
dt <- data.table::data.table(Gnumber = "A",
+clid = "CL123",
+CellLineName = "cl name",
+Tissue = "Bone",
+parental_identifier = "some cl",
+subtype = "cortical",
+ReferenceDivisionTime = 5)
+get_cellline_annotation_from_dt(dt)
+#>    cell_line_identifier cell_line_name primary_tissue parental_identifier
+#>                  <char>         <char>         <char>              <char>
+#> 1:                CL123        cl name           Bone             some cl
+#>     subtype doubling_time
+#>      <char>         <num>
+#> 1: cortical             5
+
+
+
+ + +
+ + + + + + + diff --git a/docs/reference/get_default_nested_identifiers.html b/docs/reference/get_default_nested_identifiers.html index 5071901a..a45c57f2 100644 --- a/docs/reference/get_default_nested_identifiers.html +++ b/docs/reference/get_default_nested_identifiers.html @@ -10,7 +10,7 @@ gDRcore - 1.1.20 + 1.1.22 + + + + + +
+
+
+

Retrieve the drug annotation from the annotated dt input

+ Source: R/add_annotation.R +
get_drug_annotation_from_dt.Rd
+
+ +
+

Retrieve the drug annotation from the annotated dt input

+
+ +
+

Usage

+ 
get_drug_annotation_from_dt(dt)
+
+ +
+

Arguments

+
dt
+

annotated data.table

+ +
+
+

Value

+ + +

data.table with drug annotation

+
+ +
+

Examples

+ 
dt <- data.table::data.table(Gnumber = "A",
+DrugName = "drugA",
+drug_moa = "drug_moa_A")
+get_drug_annotation_from_dt(dt)
+#>    gnumber drug_name   drug_moa
+#>     <char>    <char>     <char>
+#> 1:       A     drugA drug_moa_A
+
+
+
+ + +
+ + + + + + + diff --git a/docs/reference/get_mae_from_intermediate_data.html b/docs/reference/get_mae_from_intermediate_data.html index c35ec84f..bd71d458 100644 --- a/docs/reference/get_mae_from_intermediate_data.html +++ b/docs/reference/get_mae_from_intermediate_data.html @@ -10,7 +10,7 @@ gDRcore - 1.1.20 + 1.1.22 - - - - - -
-
-
-

Round concentration to ndigit significant digits

- Source: R/utils.R -
round_concentration.Rd
-
- -
-

Round concentration to ndigit significant digits

-
- -
-

Usage

- 
round_concentration(x, ndigit = 3)
-
- -
-

Arguments

-
x
-

value to be rounded.

- - -
ndigit
-

number of significant digits (default = 4).

- -
-
-

Value

- - -

rounded x

-
- -
-

Examples

- 
round_concentration(x = c(0.00175,0.00324,0.0091), ndigit = 1)
-#> [1] 0.002 0.003 0.010
-
-
-
-
- - -
- - - - - - - diff --git a/docs/reference/runDrugResponseProcessingPipelineFxns.html b/docs/reference/runDrugResponseProcessingPipelineFxns.html index 60eee22d..9232a3d1 100644 --- a/docs/reference/runDrugResponseProcessingPipelineFxns.html +++ b/docs/reference/runDrugResponseProcessingPipelineFxns.html @@ -16,7 +16,7 @@ gDRcore - 1.1.20 + 1.1.22