_pkgdown.yml

url: https://gdrplatform.github.io/gDRcore/
template:
  bootstrap: 5

reference:
- title: Pipeline
  desc: >
    Run different components of the gDR drug response processing pipeline.
    Either create a SummarizedExperiment and normalize raw treated and control 
    data (create_and_normalize_SE), average data (average_SE), or fit the 
    processed data (fit_SE). 
- contents:
  - has_keyword("runDrugResponseProcessingPipeline")
- title: Merging data
- contents:
  - has_keyword("merge_data")
- title: Combination helpers
- contents:
  - has_keyword("combinations")
- title: Annotation
- contents:
  - has_keyword("annotation")
- title: Calculating GR
- contents:
  - has_keyword("calculate_GR")
- title: Converting to raw data
- contents:
  - has_keyword("convert_to_raw_data")
- title: Data type
- contents:
  - has_keyword("data_type")
- title: Preparing input
- contents:
  - has_keyword("prepare_input")
- title: Mappping
- contents:
  - has_keyword("map_df")
- title: Utils
- contents:
  - has_keyword("utils")
- title: Test utils
- contents:
  - has_keyword("test_utils")