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csouganidis edited this page Nov 25, 2022 · 25 revisions

launchcontainers (draft)

This repository comprises codes to do the following:

convert images from Dicom to Nifti and organized in BIDS structure using BIDScoin (or heudicom docker container).
create symbolic links of data for running containers.
launch containers: anatROIs, RTP-preproc and RTP-pipeline.

More documentation

Steps:

Installation
How to use
Reporting and citation In this wiki page we include examples of how to report and cite RTP and all the included tools, it will change depending on the selected tools.
TO-DO list