example_output_parsed.json

{
    "anat_dir": "/black/localhome/glerma/TESTDATA/FS/17_CAMINO_6835_docker/pipeline/input/anatomical",
    "bval_dir": "/black/localhome/glerma/TESTDATA/FS/17_CAMINO_6835_docker/pipeline/input/bval",
    "bvec_dir": "/black/localhome/glerma/TESTDATA/FS/17_CAMINO_6835_docker/pipeline/input/bvec",
    "fs_dir": "/black/localhome/glerma/TESTDATA/FS/17_CAMINO_6835_docker/pipeline/input/fs",
    "input_dir": "/black/localhome/glerma/TESTDATA/FS/17_CAMINO_6835_docker/pipeline/input",
    "nifti_dir": "/black/localhome/glerma/TESTDATA/FS/17_CAMINO_6835_docker/pipeline/input/dwi",
    "output_dir": "/black/localhome/glerma/TESTDATA/FS/17_CAMINO_6835_docker/pipeline/output",
    "params": {
        "fiberWeighting": 1,
        "input_dir": "/black/localhome/glerma/TESTDATA/FS/17_CAMINO_6835_docker/pipeline/input",
        "numberOfNodes": 100,
        "outdir": [],
        "outname": "afq_output",
        "output_dir": "/black/localhome/glerma/TESTDATA/FS/17_CAMINO_6835_docker/pipeline/output",
        "phaseEncodeDir": 2,
        "run_mode": [
            []
        ],
        "track": {
            "ET_angleValues": [
                45.0,
                45.0,
                45.0,
                25.0,
                25.0,
                25.0,
                10.0,
                10.0
            ],
            "ET_maxlength": [
                100.0,
                150.0,
                200.0,
                100.0,
                150.0,
                200.0,
                150.0,
                200.0
            ],
            "ET_minlength": 20,
            "ET_numberFibers": 2000000,
            "ET_stepSizeMm": 999,
            "faFodThresh": 0.05,
            "faMaskThresh": 0.2,
            "get_vofparc": true,
            "sift_runSift": true,
            "sift_nFibers": 500000,
            "life_runLife": false,
            "life_discretization": 360,
            "life_num_iterations": 10,
            "life_saveOutput": false,
            "life_test": false,
            "life_writePDB": false,
            "mrTrixAlgo": "iFOD2",
            "mrtrix_autolmax": true,
            "mrtrix_lmax": 6,
            "mrtrix_useACT": false
        }
    },
    "tractparams_dir": "/black/localhome/glerma/TESTDATA/FS/17_CAMINO_6835_docker/pipeline/input/tractparams"
}