Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Sync anvil branch with master, plus update to 24.0 #459

Merged
merged 76 commits into from
Mar 18, 2024
Merged

Sync anvil branch with master, plus update to 24.0 #459

merged 76 commits into from
Mar 18, 2024

Commits on Jun 7, 2021

  1. Documentation of extraFileMappings

    @ksuderman
    ksuderman committed Jun 7, 2021
    Configuration menu
    Copy the full SHA
    62b4f0f View commit details
    Browse the repository at this point in the history

  2. Added note about external files

    @ksuderman
    ksuderman committed Jun 7, 2021
    Configuration menu
    Copy the full SHA
    6ff4339 View commit details
    Browse the repository at this point in the history

Commits on Jun 24, 2021

  1. Merge branch 'galaxyproject:master' into master

    @ksuderman
    ksuderman authored Jun 24, 2021
    Configuration menu
    Copy the full SHA
    fd507b3 View commit details
    Browse the repository at this point in the history

Commits on Jul 8, 2021

  1. Add GTN webhook

    @ksuderman
    ksuderman committed Jul 8, 2021
    Configuration menu
    Copy the full SHA
    50e2e6f View commit details
    Browse the repository at this point in the history

Commits on Dec 19, 2022

  1. Required extra steps to bring down deployment

    @pcm32
    pcm32 authored Dec 19, 2022
    Configuration menu
    Copy the full SHA
    5b2d170 View commit details
    Browse the repository at this point in the history

  2. Add finalizer removal

    @pcm32
    pcm32 authored Dec 19, 2022
    Configuration menu
    Copy the full SHA
    11bd8df View commit details
    Browse the repository at this point in the history

  3. Add removal of postgres secret

    @pcm32
    pcm32 authored Dec 19, 2022
    Configuration menu
    Copy the full SHA
    2f3d712 View commit details
    Browse the repository at this point in the history

  4. Fix deploy name

    @pcm32
    pcm32 authored Dec 19, 2022
    Configuration menu
    Copy the full SHA
    fd2beea View commit details
    Browse the repository at this point in the history

Commits on Feb 15, 2023

  1. Add a flag to enable the hook and parameterize the url

    @ksuderman
    ksuderman committed Feb 15, 2023
    Configuration menu
    Copy the full SHA
    ac78512 View commit details
    Browse the repository at this point in the history

Commits on Mar 28, 2023

  1. First pass at a YamlDoc like utility to generate documentation from c… 

    …omments in the values.yaml file.
    @ksuderman
    ksuderman committed Mar 28, 2023
    Configuration menu
    Copy the full SHA
    eefbc05 View commit details
    Browse the repository at this point in the history

  2. Fix table header in output

    @ksuderman
    ksuderman committed Mar 28, 2023
    Configuration menu
    Copy the full SHA
    ac52769 View commit details
    Browse the repository at this point in the history

  3. New values table

    @ksuderman
    ksuderman committed Mar 28, 2023
    Configuration menu
    Copy the full SHA
    156eb1f View commit details
    Browse the repository at this point in the history

Commits on Apr 10, 2023

  1. Disable the training materials hook by default to preserve existing b… 

    …ehavior.
    @ksuderman
    ksuderman committed Apr 10, 2023
    Configuration menu
    Copy the full SHA
    bc7ad59 View commit details
    Browse the repository at this point in the history

  2. Copy /galaxy/server/tools to the correct path.

    @ksuderman
    ksuderman committed Apr 10, 2023
    Configuration menu
    Copy the full SHA
    fc57175 View commit details
    Browse the repository at this point in the history

  3. Add missing trailing slash

    @ksuderman
    ksuderman committed Apr 10, 2023
    Configuration menu
    Copy the full SHA
    a4867d9 View commit details
    Browse the repository at this point in the history

  4. Update galaxy/templates/_helpers.tpl 

    Co-authored-by: Alexandru Mahmoud <[email protected]>
    @ksuderman @almahmoud
    ksuderman and almahmoud authored Apr 10, 2023
    Configuration menu
    Copy the full SHA
    a6b46bb View commit details
    Browse the repository at this point in the history

Commits on Apr 26, 2023

  1. Update s3-csi version to 0.35.2 

    xref: CloudVE/helm-charts#4
    @nuwang
    nuwang authored Apr 26, 2023
    Configuration menu
    Copy the full SHA
    7fefa3c View commit details
    Browse the repository at this point in the history

Commits on May 9, 2023

  1. fix non-yaml config template set via values

    @yegortokmakov
    yegortokmakov committed May 9, 2023
    Configuration menu
    Copy the full SHA
    9effe0c View commit details
    Browse the repository at this point in the history

Commits on May 15, 2023

  1. configs template: yaml file extensions, multiline

    @yegortokmakov
    yegortokmakov committed May 15, 2023
    Configuration menu
    Copy the full SHA
    5cbe3e4 View commit details
    Browse the repository at this point in the history

  2. configs template: finemae lowercase

    @yegortokmakov
    yegortokmakov committed May 15, 2023
    Configuration menu
    Copy the full SHA
    31a01df View commit details
    Browse the repository at this point in the history

Commits on May 23, 2023

  1. Do not run toYaml on string object

    @nuwang
    nuwang committed May 23, 2023
    Configuration menu
    Copy the full SHA
    8248cdc View commit details
    Browse the repository at this point in the history

Commits on May 30, 2023

  1. Merge pull request #432 from yegortokmakov/config_template_fix 

    fix non-yaml config template set via values
    @nuwang
    nuwang authored May 30, 2023
    Configuration menu
    Copy the full SHA
    8ab12fe View commit details
    Browse the repository at this point in the history

  2. Automatic Version Bumping from 5.7.1 to 5.7.2

    @actions-user
    actions-user committed May 30, 2023
    Configuration menu
    Copy the full SHA
    b3dbafc View commit details
    Browse the repository at this point in the history

Commits on Jun 6, 2023

  1. Merge pull request #430 from galaxyproject/nuwang-patch-s3fs 

    Update s3-csi version to 0.35.2
    @ksuderman
    ksuderman authored Jun 6, 2023
    Configuration menu
    Copy the full SHA
    072b34b View commit details
    Browse the repository at this point in the history

  2. Remove forcing evaluation to true

    @nuwang
    nuwang authored Jun 6, 2023
    Configuration menu
    Copy the full SHA
    bf40e3f View commit details
    Browse the repository at this point in the history

  3. Merge pull request #404 from galaxyproject/pcm32-patch-2 

    Required extra steps to bring down deployment
    @nuwang
    nuwang authored Jun 6, 2023
    Configuration menu
    Copy the full SHA
    84ef898 View commit details
    Browse the repository at this point in the history

  4. Merge branch 'master' into training-materials

    @nuwang
    nuwang authored Jun 6, 2023
    Configuration menu
    Copy the full SHA
    5ed39d1 View commit details
    Browse the repository at this point in the history

  5. Merge pull request #424 from ksuderman/418-default-tools 

    Fix copying default tools
    @nuwang
    nuwang authored Jun 6, 2023
    Configuration menu
    Copy the full SHA
    5ffc7e9 View commit details
    Browse the repository at this point in the history

  6. Merge pull request #422 from galaxyproject/update-readme 

    Generate documentation from comments in the values.yaml file.
    @nuwang
    nuwang authored Jun 6, 2023
    Configuration menu
    Copy the full SHA
    1ed1233 View commit details
    Browse the repository at this point in the history

  7. Automatic Version Bumping from 5.7.2 to 5.7.3

    @actions-user
    actions-user committed Jun 6, 2023
    Configuration menu
    Copy the full SHA
    17abde2 View commit details
    Browse the repository at this point in the history

  8. Merge branch 'master' into training-materials

    @nuwang
    nuwang authored Jun 6, 2023
    Configuration menu
    Copy the full SHA
    3a3d73f View commit details
    Browse the repository at this point in the history

  9. Merge pull request #323 from ksuderman/training-materials 

    Training materials web hook
    @nuwang
    nuwang authored Jun 6, 2023
    Configuration menu
    Copy the full SHA
    ce3a42d View commit details
    Browse the repository at this point in the history

  10. Automatic Version Bumping from 5.7.3 to 5.7.4

    @actions-user
    actions-user committed Jun 6, 2023
    Configuration menu
    Copy the full SHA
    a14262e View commit details
    Browse the repository at this point in the history

Commits on Jun 13, 2023

  1. Update the galaxy-cvmfs-csi to fix subPath problems

    @ksuderman
    ksuderman committed Jun 13, 2023
    Configuration menu
    Copy the full SHA
    5b45f9c View commit details
    Browse the repository at this point in the history

  2. Merge pull request #436 from galaxyproject/435-update-cvmfs-csi 

    Update CVMFS
    @nuwang
    nuwang authored Jun 13, 2023
    Configuration menu
    Copy the full SHA
    8a84892 View commit details
    Browse the repository at this point in the history

  3. Automatic Version Bumping from 5.7.4 to 5.7.5

    @actions-user
    actions-user committed Jun 13, 2023
    Configuration menu
    Copy the full SHA
    aa82e5f View commit details
    Browse the repository at this point in the history

Commits on Aug 4, 2023

  1. Disable to tool document cache to avoid race conditions

    @ksuderman
    ksuderman committed Aug 4, 2023
    Configuration menu
    Copy the full SHA
    69f8d16 View commit details
    Browse the repository at this point in the history

  2. Merge pull request #438 from galaxyproject/disable-tool-document-cache 

    Disable to tool document cache to avoid race conditions
    @afgane
    afgane authored Aug 4, 2023
    Configuration menu
    Copy the full SHA
    f33151b View commit details
    Browse the repository at this point in the history

Commits on Aug 18, 2023

  1. Only execute the if CVMFS is actually enabled.

    @ksuderman
    ksuderman committed Aug 18, 2023
    Configuration menu
    Copy the full SHA
    7c489f4 View commit details
    Browse the repository at this point in the history

Commits on Aug 19, 2023

  1. Merge pull request #440 from galaxyproject/439-guard-cvmfs-fix 

    Only execute the hook-cvmfs-fix if CVMFS is actually enabled.
    @nuwang
    nuwang authored Aug 19, 2023
    Configuration menu
    Copy the full SHA
    96508a1 View commit details
    Browse the repository at this point in the history

  2. Automatic Version Bumping from 5.7.5 to 5.7.6

    @actions-user
    actions-user committed Aug 19, 2023
    Configuration menu
    Copy the full SHA
    1d444a5 View commit details
    Browse the repository at this point in the history

Commits on Sep 13, 2023

  1. Update to latest tusd

    @nuwang
    nuwang committed Sep 13, 2023
    Configuration menu
    Copy the full SHA
    eac6d58 View commit details
    Browse the repository at this point in the history

Commits on Sep 14, 2023

  1. Merge pull request #442 from galaxyproject/bump_tusd 

    Update to latest tusd v1.13.0
    @afgane
    afgane authored Sep 14, 2023
    Configuration menu
    Copy the full SHA
    02007fc View commit details
    Browse the repository at this point in the history

  2. Add job to generate GitHub tags and releases to the packaging workflow

    @ksuderman
    ksuderman committed Sep 14, 2023
    Configuration menu
    Copy the full SHA
    afeb930 View commit details
    Browse the repository at this point in the history

  3. Fix version parsing

    @ksuderman
    ksuderman committed Sep 14, 2023
    Configuration menu
    Copy the full SHA
    fdfc431 View commit details
    Browse the repository at this point in the history

  4. Merge pull request #444 from galaxyproject/tag-and-release 

    Generate a GitHub tag and release for every version pushed to Docker and Quay.io.
    @ksuderman
    ksuderman authored Sep 14, 2023
    Configuration menu
    Copy the full SHA
    427a23c View commit details
    Browse the repository at this point in the history

Commits on Oct 11, 2023

  1. Update app version to 23.1

    @ksuderman
    ksuderman committed Oct 11, 2023
    Configuration menu
    Copy the full SHA
    cff035b View commit details
    Browse the repository at this point in the history

  2. Update the image.tag version

    @ksuderman
    ksuderman committed Oct 11, 2023
    Configuration menu
    Copy the full SHA
    49c054f View commit details
    Browse the repository at this point in the history

  3. Revert the image.tag to trigger another build

    @ksuderman
    ksuderman committed Oct 11, 2023
    Configuration menu
    Copy the full SHA
    d3df0a8 View commit details
    Browse the repository at this point in the history

  4. Back to 23.1

    @ksuderman
    ksuderman committed Oct 11, 2023
    Configuration menu
    Copy the full SHA
    c777429 View commit details
    Browse the repository at this point in the history

Commits on Oct 12, 2023

  1. Allow test to be run on workflow dispatch. Revert to k3s 1.25

    @ksuderman
    ksuderman committed Oct 12, 2023
    Configuration menu
    Copy the full SHA
    444b03c View commit details
    Browse the repository at this point in the history

Commits on Oct 17, 2023

  1. Try testing with the 23.1-auto image

    @ksuderman
    ksuderman committed Oct 17, 2023
    Configuration menu
    Copy the full SHA
    abe0c18 View commit details
    Browse the repository at this point in the history

Commits on Oct 18, 2023

  1. Back to 23.1

    @ksuderman
    ksuderman committed Oct 18, 2023
    Configuration menu
    Copy the full SHA
    cc219e2 View commit details
    Browse the repository at this point in the history

Commits on Nov 16, 2023

  1. Update the path to base css file

    @afgane
    afgane committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    0c30c34 View commit details
    Browse the repository at this point in the history

Commits on Nov 17, 2023

  1. Merge pull request #445 from galaxyproject/update-23.1 

    Update app version to 23.1
    @afgane
    afgane authored Nov 17, 2023
    Configuration menu
    Copy the full SHA
    1c0dd5b View commit details
    Browse the repository at this point in the history

  2. Automatic Version Bumping from 5.7.6 to 5.8.0

    @actions-user
    actions-user committed Nov 17, 2023
    Configuration menu
    Copy the full SHA
    4e12bbb View commit details
    Browse the repository at this point in the history

Commits on Feb 14, 2024

  1. Add short link to the TPV shared database

    @nuwang
    nuwang authored Feb 14, 2024
    Configuration menu
    Copy the full SHA
    fce1ae6 View commit details
    Browse the repository at this point in the history

  2. Merge pull request #449 from galaxyproject/short-url-tpv-shared-db 

    Add short link to the TPV shared database
    @afgane
    afgane authored Feb 14, 2024
    Configuration menu
    Copy the full SHA
    9c6eb6e View commit details
    Browse the repository at this point in the history

Commits on Feb 15, 2024

  1. Exposes job.PriorityClass.value as modifiable value

    @mapk-amazon
    mapk-amazon committed Feb 15, 2024
    Configuration menu
    Copy the full SHA
    9905ab2 View commit details
    Browse the repository at this point in the history

  2. Update galaxy/templates/priorityclass-job.yaml 

    Updated description according to afgane's input.

Co-authored-by: Enis Afgan <[email protected]>
    @mapk-amazon @afgane
    mapk-amazon and afgane authored Feb 15, 2024
    Configuration menu
    Copy the full SHA
    4ed41b3 View commit details
    Browse the repository at this point in the history

  3. Update galaxy/templates/priorityclass-job.yaml 

    Simplifying if/else by default as suggested by nuwang.

Co-authored-by: Nuwan Goonasekera <[email protected]>
    @mapk-amazon @nuwang
    mapk-amazon and nuwang authored Feb 15, 2024
    Configuration menu
    Copy the full SHA
    dcf1770 View commit details
    Browse the repository at this point in the history

  4. Update galaxy/templates/priorityclass-job.yaml 

    Fixing last line chomp.

Co-authored-by: Nuwan Goonasekera <[email protected]>
    @mapk-amazon @nuwang
    mapk-amazon and nuwang authored Feb 15, 2024
    Configuration menu
    Copy the full SHA
    cdd1f39 View commit details
    Browse the repository at this point in the history

Commits on Feb 16, 2024

  1. Merge pull request #451 from mapk-amazon/exposing_priorityClass_value… 

    …s_for_jobs

Exposes job.PriorityClass.value as modifiable value
    @nuwang
    nuwang authored Feb 16, 2024
    Configuration menu
    Copy the full SHA
    adfda49 View commit details
    Browse the repository at this point in the history

  2. Automatic Version Bumping from 5.8.0 to 5.9.0

    @actions-user
    actions-user committed Feb 16, 2024
    Configuration menu
    Copy the full SHA
    b66b2bf View commit details
    Browse the repository at this point in the history

Commits on Feb 19, 2024

  1. Ensure that one of the dependent jobs succeeded.

    @ksuderman
    ksuderman committed Feb 19, 2024
    Configuration menu
    Copy the full SHA
    29f01e6 View commit details
    Browse the repository at this point in the history

Commits on Feb 20, 2024

  1. Mark the last release as the --latest

    @ksuderman
    ksuderman committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    0a2fdd8 View commit details
    Browse the repository at this point in the history

  2. Merge pull request #453 from ksuderman/452-tag-and-release 

    Ensure that one of the dependent jobs succeeded.
    @nuwang
    nuwang authored Feb 20, 2024
    Configuration menu
    Copy the full SHA
    1b40fda View commit details
    Browse the repository at this point in the history

  3. Add more notes on product deployments and chart installations

    @nuwang
    nuwang committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    24920ed View commit details
    Browse the repository at this point in the history

  4. Merge pull request #454 from galaxyproject/update_docs 

    Add more notes on product deployments and chart installations
    @afgane
    afgane authored Feb 20, 2024
    Configuration menu
    Copy the full SHA
    3e3d1b5 View commit details
    Browse the repository at this point in the history

Commits on Feb 21, 2024

  1. This is the script I have been using to tag and release prior versions.

    @ksuderman
    ksuderman committed Feb 21, 2024
    Configuration menu
    Copy the full SHA
    54d93c8 View commit details
    Browse the repository at this point in the history

Commits on Feb 23, 2024

  1. Generate notes and command line parsing

    @ksuderman
    ksuderman committed Feb 23, 2024
    Configuration menu
    Copy the full SHA
    ba4a0e9 View commit details
    Browse the repository at this point in the history

  2. Add Press Q to quit to the help message

    @ksuderman
    ksuderman committed Feb 23, 2024
    Configuration menu
    Copy the full SHA
    5752ec6 View commit details
    Browse the repository at this point in the history

  3. Fix typo in help. Handle invalid options

    @ksuderman
    ksuderman committed Feb 23, 2024
    Configuration menu
    Copy the full SHA
    1f4240d View commit details
    Browse the repository at this point in the history

  4. Merge pull request #455 from ksuderman/tag-and-release-script 

    Add tag and release script
    @nuwang
    nuwang authored Feb 23, 2024
    Configuration menu
    Copy the full SHA
    0afe341 View commit details
    Browse the repository at this point in the history

Commits on Mar 18, 2024

  1. Merge branch 'master'

    @afgane
    afgane committed Mar 18, 2024
    Configuration menu
    Copy the full SHA
    85e2f4b View commit details
    Browse the repository at this point in the history

  2. Use anvil's image

    @afgane
    afgane committed Mar 18, 2024
    Configuration menu
    Copy the full SHA
    174f5a8 View commit details
    Browse the repository at this point in the history