| nameOverride |
Partial override of the galaxy.fullname. The .Release.Name will be prepended to generate the fullname. |
| fullnameOverride |
Fully override the galaxy.fullname |
| image.repository |
Repository containing the Galaxy image. |
| image.tag |
Galaxy Docker image tag (generally corresponds to the desired Galaxy version) |
| image.pullPolicy |
Galaxy image pull policy |
| imagePullSecrets |
Secrets used to access a Galaxy image from a private repository |
| trainingHook.enabled |
Enable the GTN webhook to link references to tools in tutorials to the corresponding tool panel in Galaxy. |
| trainingHook.url |
The training material server used to service the training-material webhook. |
| service.type |
The Galaxy service type |
| service.port |
The port Galaxy is listening to |
| service.nodePort |
The external port exposed on each node |
| metrics.enabled |
Enable the metrics server. Defaults to false |
| serviceAccount.create |
Specifies whether a service account should be created |
| serviceAccount.annotations |
Annotations to add to the service account |
| serviceAccount.name |
The name of the service account to use. If not set and create is true, a name is generated using the fullname template |
| rbac.enabled |
Does the cluster use role based access control. |
| securityContext.fsGroup |
Security context and file system group used by jobs. |
| persistence |
Configure the PVC used by Galaxy for local storage. |
| persistence.enabled |
Persistence is enabled by default |
| persistence.name |
Name of the PVC to create |
| persistence.storageClass |
StorageClass for the PVC. Must support ReadWriteMany. |
| persistence.existingClaim |
The name of an existing PVC to use for persistence. |
| setupJob |
tasks to perform once after installation |
| setupJob.createDatabase |
create the database |
| setupJob.securityContext.runAsUser |
the setup jobs will run as this user |
| setupJob.securityContext.runAsGroup |
the runAsUser will belong to this group. |
| setupJob.securityContext.fsGroup |
the filesystem group |
| setupJob.downloadToolConfs.archives.startup |
A tar.gz publicly accessible archive containing AT LEAST conf files and XML tool wrappers. Meant to be enough for Galaxy handlers to startup |
| setupJob.downloadToolConfs.archives.running |
A tar.gz publicly accessible archive containing AT LEAST confs, tool wrappers, and scripts excluding test data. Meant to be enough for Galaxy handlers to run jobs. |
| setupJob.downloadToolConfs.archives.full |
A tar.gz publicly accessible archive containing the full tools directory, including each tool's test data. Meant to be enough to run automated tool-tests, fully mimicking CVMFS setup |
| extraInitContainers |
Allow users to specify extra init containers |
| ingress.enabled |
Should ingress be enabled. Defaults to true |
| ingress.ingressClassName |
|
| resources.requests |
We recommend updating these based on the usage levels of the server. |
| postgresql.deploy |
Whether to deploy the postgresl operator. In general, we recommend installing the operator globally in production. |
| postgresql.existingDatabase |
hostname and port of an existing database to use. |
| refdata |
Configuration block for reference data |
| refdata.enabled |
Whether or not to mount cloud-hosted Galaxy reference data and tools. |
| refdata.type |
s3fs or cvmfs, determines the CSI to use for mounting reference data. cvmfs is the default and recommended for the time being. |
| cvmfs |
Configuration block if cvmfs is used as refdata.type |
| cvmfs.deploy |
Deploy the Galaxy-CVMFS-CSI Helm Chart. This is an optional dependency, and for production scenarios it should be deployed separately as a cluster-wide resource |
| cvmfs.deployPostInstallFix |
Deploy the fix for Galaxy-CVMFS-CSI Helm Chart. |
| s3csi |
Configuration block if s3csi is used as the refdata.type |
| s3csi.deploy |
Deploy the CSI-S3 Helm Chart. This is an optional dependency, and for production scenarios it should be deployed separately as a cluster-wide resource. |
| useSecretConfigs |
When this flag is set to true, all configs will be set in secrets, when it is set to false, all configs will be set in configmaps |
| configs |
All config files will be relative to /galaxy/server/config/ directory |
| configs.galaxy.yml |
Galaxy configuration. See the Galaxy documentation for more information. |
| jobs |
Additional dynamic rules to map into the container. |
| jobs.priorityClass.enabled |
Assign a priorityClass to the dispatched jobs. |