From a7622f289a2d19ef9270f1ab36c7410738580352 Mon Sep 17 00:00:00 2001 From: Alok Thatikunta Date: Fri, 25 Jan 2019 21:49:54 +0530 Subject: [PATCH] Docker quay usage (#70) * Update docker usage --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index c730849..1114673 100644 --- a/README.md +++ b/README.md @@ -138,7 +138,7 @@ The simplest way is to [![install with bioconda](https://img.shields.io/badge/in It can also be installed with `brew` as `brew install brewsci/bio/mosdepth` or used via docker with quay: ``` docker pull quay.io/biocontainers/mosdepth:0.2.4--he527e40_0 -docker run -v /hostpath/:/opt/mount quay.io/biocontainers/mosdepth:0.2.4--he527e40_0 mosdepth -n --fast-mode -t 4 --by 1000 /opt/mount/sample $bam +docker run -v /hostpath/:/opt/mount quay.io/biocontainers/mosdepth:0.2.4--he527e40_0 mosdepth -n --fast-mode -t 4 --by 1000 /opt/mount/sample /opt/mount/$bam ``` Unless you want to install [nim](https://nim-lang.org), simply download the