document-and-deploy.yml

name: document-and-deploy

on:
  push:
  pull_request:
  release:

jobs:
  document-and-deploy:
    # Skip deploy for automated (e.g., documentation) and [no-deploy] commits
    if: "!contains(github.event.head_commit.message, '[automated]') && !contains(github.event.head_commit.message, '[no-deploy]')"
    runs-on: ubuntu-latest

    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - uses: r-lib/actions/setup-pandoc@v2

      - name: Set up R version
        uses: r-lib/actions/setup-r@v2
        with:
          r-version: "oldrel" # As shinyapps.io needs some time to catch up after releases
          use-public-rspm: true

      - name: Set up R Dependencies
        uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: devtools, roxygen2, remotes, rsconnect

      - name: Create documentation
        run: |
          R -e "
            file.remove('NAMESPACE');
            descr <- readLines('DESCRIPTION');
            descr <- stringr::str_replace(descr, '^Date.*$', paste('Date:', Sys.Date()));
            writeLines(descr, 'DESCRIPTION');
            roxygen2::roxygenise();
            try(devtools::build_manual())
          "

      - name: commit
        run: |
          git config --local user.email "actions@github.com"
          git config --local user.name "GitHub Actions"
          git add -f man/\* NAMESPACE
          git commit -m 'Documentation' || echo "No changes to commit"
          git push origin || echo "No changes to commit"

      - name: Deploy to Shiny
        env:
          GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
        run: |
          R -e "
            remotes::install_github('${{ github.repository }}', ref = '${{ github.ref_name }}', force = TRUE);
            rsconnect::setAccountInfo(name='forrt-replications', token=${{secrets.SHINYAPPS_TOKEN}}, secret=${{secrets.SHINYAPPS_SECRET}});
            rsconnect::deployApp(appName = 'fred_annotator', appDir = './inst/fred_annotator', forceUpdate = TRUE);
            rsconnect::deployApp(appName = 'fred_explorer', appDir = './inst/fred_explorer', forceUpdate = TRUE);
          "

      - name: Deploy release version conditionally
        if: github.event_name == 'release' && github.event.release.tag_name != '*test*'
        run: |
          R -e "
              rsconnect::deployApp(appName = 'fred_explorer_release', appDir = './inst/fred_explorer', forceUpdate = TRUE);
              rsconnect::deployApp(appName = 'fred_annotator_release', appDir = './inst/fred_annotator', forceUpdate = TRUE);
          "

      - name: Create pkgdown
        env:
          GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
        run: |
          R -e "
            if (!require(FReD) remotes::install_local(force = TRUE);
            options(pkgdown.internet = TRUE)
            pkgdown::build_site_github_pages(new_process = FALSE)
          "

      - name: Deploy to GitHub pages 🚀
        if: ${{ github.ref_name }} == 'main'
        uses: JamesIves/github-pages-deploy-action@v4
        with:
          clean: true
          branch: gh-pages
          folder: docs