diff --git a/presentations/faim-wako-searchfirst_overview.pdf b/presentations/faim-wako-searchfirst_overview.pdf new file mode 100644 index 0000000..87a56d3 Binary files /dev/null and b/presentations/faim-wako-searchfirst_overview.pdf differ diff --git a/presentations/faim-wako-searchfirst_overview.pdf.license b/presentations/faim-wako-searchfirst_overview.pdf.license new file mode 100644 index 0000000..a54e119 --- /dev/null +++ b/presentations/faim-wako-searchfirst_overview.pdf.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2023 Friedrich Miescher Institute for Biomedical Research (FMI), Basel (Switzerland) + +SPDX-License-Identifier: MIT diff --git a/scripts/simple_segmentation.py b/scripts/searchfirst.py similarity index 88% rename from scripts/simple_segmentation.py rename to scripts/searchfirst.py index 31a5cf1..2421825 100644 --- a/scripts/simple_segmentation.py +++ b/scripts/searchfirst.py @@ -3,8 +3,8 @@ # SPDX-License-Identifier: MIT """SearchFirst script to run a simple segmentation.""" -import typer as typer -from faim_wako_searchfirst.segment import run +import typer +from faim_wako_searchfirst.main import run def main(folder_path: str): diff --git a/src/faim_wako_searchfirst/sample.py b/src/faim_wako_searchfirst/sample.py index 52ef681..ad40318 100644 --- a/src/faim_wako_searchfirst/sample.py +++ b/src/faim_wako_searchfirst/sample.py @@ -26,7 +26,6 @@ def dense_grid( block_size=(binning_factor, binning_factor), func=np.max, ) - print(downscaled.shape) with open(output_path, "w", newline="") as csv_file: c = csv.writer(csv_file) count = 0