pyproject.toml

# SPDX-FileCopyrightText: 2023 Friedrich Miescher Institute for Biomedical Research (FMI), Basel (Switzerland)
#
# SPDX-License-Identifier: MIT

[build-system]
requires = ["hatchling", "hatch-vcs"]
build-backend = "hatchling.build"

[project]
name = "faim-wako-searchfirst"
description = ''
readme = "README.md"
requires-python = ">=3.9"
license = "MIT"
keywords = []
authors = [
  { name = "Jan Eglinger", email = "jan.eglinger@fmi.ch" },
]
classifiers = [
  "Development Status :: 4 - Beta",
  "Programming Language :: Python",
  "Programming Language :: Python :: 3.9",
  "Programming Language :: Python :: 3.10",
  "Programming Language :: Python :: 3.11",
  "Programming Language :: Python :: 3.12",
  "Programming Language :: Python :: Implementation :: CPython",
  "Programming Language :: Python :: Implementation :: PyPy",
]
dependencies = [
  "cellpose",
  "confuse",
  "numpy",
  "pandas",
  "rich",
  "scikit-image",
  "tqdm",
  "typer"
]
dynamic = ["version"]

[project.urls]
Documentation = "https://github.com/fmi-faim/faim-wako-searchfirst#readme"
Issues = "https://github.com/fmi-faim/faim-wako-searchfirst/issues"
Source = "https://github.com/fmi-faim/faim-wako-searchfirst"

[tool.hatch.version]
source = "vcs"

[tool.hatch.envs.default]
dependencies = [
  "pandas",
  "pytest",
  "pytest-cov",
]

[tool.hatch.envs.default.scripts]
cov = "pytest --cov-report=term-missing --cov-config=pyproject.toml --cov=faim_wako_searchfirst --cov=tests {args}"
no-cov = "cov --no-cov {args}"

[[tool.hatch.envs.test.matrix]]
python = ["38", "39", "310", "311"]

[tool.coverage.run]
branch = true
parallel = true

[tool.coverage.report]
exclude_lines = [
  "no cov",
  "if __name__ == .__main__.:",
  "if TYPE_CHECKING:",
]

[tool.ruff]
line-length = 120
select = ['A', 'B', 'C', 'D', 'E', 'F', 'I']
target-version = 'py39'