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Add option to pre-process CATMAID neuron before nblasting #6

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schlegelp opened this issue Mar 4, 2017 · 6 comments
Open

Add option to pre-process CATMAID neuron before nblasting #6

schlegelp opened this issue Mar 4, 2017 · 6 comments

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@schlegelp
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Possible options:

  • pruning of small branches
  • Strahler index?
@jefferis
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jefferis commented Mar 4, 2017

See natverse/elmr#19

@schlegelp
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Would be straight forward to run these commands from via the R bindings, I guess.
How do you pass the processed neuron to nblast then?

@schlegelp
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Easiest way would probably to add an option to preprocess to the nblast_fafb package?

@jefferis
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jefferis commented Mar 4, 2017

The easiest would be to allow nblast_fafb to have extra arg(s) to run some additional processing functions.

@jefferis
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jefferis commented Mar 4, 2017

Snap.

@jefferis
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jefferis commented Mar 4, 2017

For info, if you look at that issue, you'll see that there are a couple of things that need some sigificant speedups (nat::resample and nat::strahler_order). I've done nat::strahler_order but resample is a bit more fiddly.

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