-
Notifications
You must be signed in to change notification settings - Fork 0
/
Olga.tsv
We can make this file beautiful and searchable if this error is corrected: It looks like row 24 should actually have 33 columns, instead of 34 in line 23.
24 lines (24 loc) · 13.3 KB
/
Olga.tsv
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
study barcode disease disease_name sample_type sample_type_name analyte_type library_type center center_name platform platform_name assembly filename files_size checksum analysis_id aliquot_id participant_id sample_id tss_id sample_accession published uploaded modified state side start_time end_time download_attempt_num status overall_rate_(MB/s) pgrr_file_path
TCGA TCGA-61-2111-01A-01R-1568-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina NCBI36_BCCAGSC_variant TCGA-61-2111-01A-01R-1568-13_rnaseq.bam 6742667357 e2402f388a429d0f7bb88eae12bdd2c8 82662c80-ac97-4b3a-94e1-229e1b57af95 25c0888a-25b9-4cc0-a02f-6d363a341e8f 91a17d40-c8cb-4cce-b306-966382a8fe4a b469134f-2528-456e-bf69-c5b5a9268145 61 6/22/2012 6/22/2012 5/16/2013 Live pitt 8/11/14 12:40 PM 8/11/14 12:49 PM 1 Finished 11.9 ov/TCGA-61-2111/TCGA-61-2111-01/RNA_Seq/CGHub_Illumina/82662c80-ac97-4b3a-94e1-229e1b57af95
TCGA TCGA-61-2111-01A-01R-1568-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina GRCh37-lite TCGA-61-2111-01A-01R-1568-13_GRCh37-lite_rnaseq.bam 6748492290 3c6ca82f3dabd4aac75926cb437d11e7 d77187be-6f01-48fc-aefb-91a25608609b 25c0888a-25b9-4cc0-a02f-6d363a341e8f 91a17d40-c8cb-4cce-b306-966382a8fe4a b469134f-2528-456e-bf69-c5b5a9268145 61 12/11/2012 12/11/2012 5/16/2013 Live pitt 8/11/14 12:40 PM 8/11/14 12:49 PM 1 Finished 12 ov/TCGA-61-2111/TCGA-61-2111-01/RNA_Seq/CGHub_Illumina/d77187be-6f01-48fc-aefb-91a25608609b
TCGA TCGA-61-2008-01A-02R-1568-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina NCBI36_BCCAGSC_variant TCGA-61-2008-01A-02R-1568-13_rnaseq.bam 9819716558 a68454af908ada297df7cf56c51aed85 2ceedaa3-622c-4ef5-9e03-8e61968d2138 10271f7f-cce6-44fd-8754-7a4beabfb394 3ac45a71-c463-4f0f-b030-58c475a34418 69d76e7a-e0cb-4a8d-b6cd-67d8702d2af9 61 6/22/2012 6/22/2012 5/16/2013 Live pitt 8/11/14 2:02 PM 8/11/14 2:11 PM 1 Finished 11.9 ov/TCGA-61-2008/TCGA-61-2008-01/RNA_Seq/CGHub_Illumina/2ceedaa3-622c-4ef5-9e03-8e61968
TCGA TCGA-61-2008-01A-02R-1568-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina GRCh37-lite TCGA-61-2008-01A-02R-1568-13_GRCh37-lite_rnaseq.bam 9820017163 0b6ae1adb4de24295c62296436bd7f9e abee696e-f6d4-491e-9854-5212c26ac151 10271f7f-cce6-44fd-8754-7a4beabfb394 3ac45a71-c463-4f0f-b030-58c475a34418 69d76e7a-e0cb-4a8d-b6cd-67d8702d2af9 61 12/11/2012 12/11/2012 5/16/2013 Live pitt 8/11/14 2:49 PM 8/11/14 3:04 PM 1 Finished 10.6 ov/TCGA-61-2008/TCGA-61-2008-01/RNA_Seq/CGHub_Illumina/abee696e-f6d4-491e-9854-5212c26ac15
TCGA TCGA-61-2008-02A-01R-1568-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TR Recurrent Solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina NCBI36_BCCAGSC_variant TCGA-61-2008-02A-01R-1568-13_rnaseq.bam 5935989771 f948d2fdd0987fffeac55923906e5f87 2ce547e0-4bed-4a66-9c7a-6a6dae2f9e86 b90a4b33-cb6f-4c75-bc26-ff316ea81cce 3ac45a71-c463-4f0f-b030-58c475a34418 9983a90e-9f72-4fe0-9d3b-62d25d3356ee 61 6/22/2012 6/22/2012 5/16/2013 Live pitt 8/11/14 1:10 PM 8/11/14 1:25 PM 1 Finished 10.7 ov/TCGA-61-2008/TCGA-61-2008-02/RNA_Seq/CGHub_Illumina/2ce547e0-4bed-4a66-9c7a-6a6dae2f9e86
TCGA TCGA-61-2008-02A-01R-1568-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TR Recurrent Solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina GRCh37-lite TCGA-61-2008-02A-01R-1568-13_GRCh37-lite_rnaseq.bam 5930400213 7da9d805a742044cc6f05fa189875830 5ddf2058-e2b7-4a67-9ff9-8bf62decd0c0 b90a4b33-cb6f-4c75-bc26-ff316ea81cce 3ac45a71-c463-4f0f-b030-58c475a34418 9983a90e-9f72-4fe0-9d3b-62d25d3356ee 61 12/11/2012 12/11/2012 5/16/2013 Live pitt 8/11/14 1:24 PM 8/11/14 1:34 PM 1 Finished 9.62 ov/TCGA-61-2008/TCGA-61-2008-02/RNA_Seq/CGHub_Illumina/5ddf2058-e2b7-4a67-9ff9-8bf62decd0c0
TCGA TCGA-61-1911-01A-01R-1567-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina NCBI36_BCCAGSC_variant TCGA-61-1911-01A-01R-1567-13_rnaseq.bam 3913360199 6a264e6f80492a1e5c1dda0a7636b7c8 42f17586-c3d6-4b7c-9e01-68361a142aa0 1ec9cbc3-fd76-4d44-be24-8ff296d3c4c9 93095c36-2263-438f-a619-a4a4d6ae13c7 7f7b442a-3985-4f4a-98b1-da82670c957c 61 6/27/2012 6/27/2012 5/16/2013 Live pitt 8/11/14 2:11 PM 8/11/14 2:14 PM 1 Finished 18.9 ov/TCGA-61-1911/TCGA-61-1911-01/RNA_Seq/CGHub_Illumina/42f17586-c3d6-4b7c-9e01-68361a142aa0
TCGA TCGA-61-1911-01A-01R-1567-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina GRCh37-lite TCGA-61-1911-01A-01R-1567-13_GRCh37-lite_rnaseq.bam 3907676731 e2a68d990a5e96cf6ebe845aa4ed8019 864e1169-5a0c-44d4-b5c6-d9162b4e310e 1ec9cbc3-fd76-4d44-be24-8ff296d3c4c9 93095c36-2263-438f-a619-a4a4d6ae13c7 7f7b442a-3985-4f4a-98b1-da82670c957c 61 12/12/2012 12/12/2012 5/16/2013 Live pitt 8/11/14 1:48 PM 8/11/14 1:55 PM 1 Finished 8.45 ov/TCGA-61-1911/TCGA-61-1911-01/RNA_Seq/CGHub_Illumina/864e1169-5a0c-44d4-b5c6-d9162b4e310e
TCGA TCGA-61-1911-01A-01R-1567-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina unaligned TCGA-61-1911-01A-01R-1567-13_rnaseq_fastq.tar 4216514560 7a6412618b347dd77c970c527503a9b7 c8a90505-53d9-4703-8fce-6c5d0c37f0e0 1ec9cbc3-fd76-4d44-be24-8ff296d3c4c9 93095c36-2263-438f-a619-a4a4d6ae13c7 7f7b442a-3985-4f4a-98b1-da82670c957c 61 3/27/2014 3/27/2014 3/27/2014 Live pitt 8/11/14 1:41 PM 8/11/14 1:48 PM 1 Finished 10.2 ov/TCGA-61-1911/TCGA-61-1911-01/RNA_Seq/CGHub_Illumina/c8a90505-53d9-4703-8fce-6c5d0c37f0e0
TCGA TCGA-61-2095-01A-01R-1568-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina GRCh37-lite TCGA-61-2095-01A-01R-1568-13_GRCh37-lite_rnaseq.bam 18599853136 3706ca56524efdb8bbb464b13efc17d2 3b9dbbd0-939c-435d-a46d-ebabc7f303a8 15a11ef0-5e18-44d0-ba50-73cf356b8408 778ce436-a825-4689-81c1-b7c965404163 b2cde517-9404-45b2-bd39-3dedb4e129fc 61 12/9/2012 12/9/2012 5/16/2013 Live pitt 8/11/14 2:24 PM 8/11/14 2:47 PM 1 Finished 13.6 ov/TCGA-61-2095/TCGA-61-2095-01/RNA_Seq/CGHub_Illumina/3b9dbbd0-939c-435d-a46d-ebabc7f303a8
TCGA TCGA-61-2095-01A-01R-1568-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina NCBI36_BCCAGSC_variant TCGA-61-2095-01A-01R-1568-13_rnaseq.bam 18604565540 566b33be3bb75cc78fc2bf6a5e58707f 76adfc3c-18b0-4258-a654-2a615ed23f74 15a11ef0-5e18-44d0-ba50-73cf356b8408 778ce436-a825-4689-81c1-b7c965404163 b2cde517-9404-45b2-bd39-3dedb4e129fc 61 6/23/2012 6/23/2012 5/16/2013 Live pitt 8/11/14 1:35 PM 8/11/14 2:00 PM 1 Finished 12.3 ov/TCGA-61-2095/TCGA-61-2095-01/RNA_Seq/CGHub_Illumina/76adfc3c-18b0-4258-a654-2a615ed23f74
TCGA TCGA-61-2095-01A-01R-1568-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina unaligned TCGA-61-2095-01A-01R-1568-13_rnaseq_fastq.tar 20094986240 3ed888872586716a0b5c45f59d5ee2b4 547debdc-48cb-4d89-a928-726a6303fd72 15a11ef0-5e18-44d0-ba50-73cf356b8408 778ce436-a825-4689-81c1-b7c965404163 b2cde517-9404-45b2-bd39-3dedb4e129fc 61 3/29/2014 3/29/2014 3/29/2014 Live pitt 8/11/14 1:26 PM 8/11/14 1:55 PM 1 Finished 11.5 ov/TCGA-61-2095/TCGA-61-2095-01/RNA_Seq/CGHub_Illumina/547debdc-48cb-4d89-a928-726a6303fd72
TCGA TCGA-61-1914-01A-01R-1567-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina GRCh37-lite TCGA-61-1914-01A-01R-1567-13_GRCh37-lite_rnaseq.bam 9212463757 1822e78bea499925fbead12dfaf3cbe4 5fa9f7e6-b912-43e2-84f0-784a4d6cac1d 0d75483f-eab3-41c8-b2cc-453af29b6f44 8e1b8811-1eb2-4337-852c-c19eaa0ee418 98f6fcfd-df24-422f-a14d-144fd1a02849 61 12/13/2012 12/13/2012 5/16/2013 Live pitt 8/11/14 1:24 PM 8/11/14 1:40 PM 1 Finished 9.16 ov/TCGA-61-1914/TCGA-61-1914-01/RNA_Seq/CGHub_Illumina/5fa9f7e6-b912-43e2-84f0-784a4d6cac1d
TCGA TCGA-61-1914-01A-01R-1567-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina NCBI36_BCCAGSC_variant TCGA-61-1914-01A-01R-1567-13_rnaseq.bam 9215979841 6b6aa123b968d2e02c2b8d6b602167dc a9eee2cf-9c8d-497c-9c4f-54d005963668 0d75483f-eab3-41c8-b2cc-453af29b6f44 8e1b8811-1eb2-4337-852c-c19eaa0ee418 98f6fcfd-df24-422f-a14d-144fd1a02849 61 6/25/2012 6/25/2012 5/16/2013 Live pitt 8/11/14 12:50 PM 8/11/14 1:07 PM 1 Finished 9.33 ov/TCGA-61-1914/TCGA-61-1914-01/RNA_Seq/CGHub_Illumina/a9eee2cf-9c8d-497c-9c4f-54d005963668
TCGA TCGA-61-1914-01A-01R-1567-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina unaligned TCGA-61-1914-01A-01R-1567-13_rnaseq_fastq.tar 10557931520 a13f94fb468788bebc40054ab6b4c9ea 7d4f2b5b-3ec1-4fb2-a9bc-0d660280b35c 0d75483f-eab3-41c8-b2cc-453af29b6f44 8e1b8811-1eb2-4337-852c-c19eaa0ee418 98f6fcfd-df24-422f-a14d-144fd1a02849 61 3/27/2014 3/27/2014 3/27/2014 Live pitt 8/11/14 1:07 PM 8/11/14 1:24 PM 1 Finished 10.4 ov/TCGA-61-1914/TCGA-61-1914-01/RNA_Seq/CGHub_Illumina/7d4f2b5b-3ec1-4fb2-a9bc-0d660280b35c
TCGA TCGA-61-1733-01A-01R-1567-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina NCBI36_BCCAGSC_variant TCGA-61-1733-01A-01R-1567-13_rnaseq.bam 10568592505 f36a6eefe9e790140d7158e72b505844 6e11697e-9683-480f-b8bc-9919787c3b16 e6f856bf-0694-4c21-aecc-0d8dd54761f1 04ecaf38-0232-4dcd-9242-308a22cc1331 a047a512-409f-4293-9585-9933f1503f9d 61 6/29/2012 6/29/2012 5/16/2013 Live pitt 8/11/14 2:47 PM 8/11/14 3:04 PM 1 Finished 10.5 ov/TCGA-61-1733/TCGA-61-1733-01/RNA_Seq/CGHub_Illumina/6e11697e-9683-480f-b8bc-9919787c3b16
TCGA TCGA-61-1733-01A-01R-1567-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina GRCh37-lite TCGA-61-1733-01A-01R-1567-13_GRCh37-lite_rnaseq.bam 10533581808 31d7d9fec05e507d940a32709fcc15d4 e0edaaee-128c-4859-b263-65be480898b2 e6f856bf-0694-4c21-aecc-0d8dd54761f1 04ecaf38-0232-4dcd-9242-308a22cc1331 a047a512-409f-4293-9585-9933f1503f9d 61 12/13/2012 12/13/2012 5/16/2013 Live pitt 8/11/14 2:14 PM 8/11/14 2:24 PM 1 Finished 18.4 ov/TCGA-61-1733/TCGA-61-1733-01/RNA_Seq/CGHub_Illumina/e0edaaee-128c-4859-b263-65be480898b2
TCGA TCGA-61-1733-01A-01R-1567-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina unaligned TCGA-61-1733-01A-01R-1567-13_rnaseq_fastq.tar 11694366720 788104cf44ec43fbfc5da38f60057536 710e992a-a774-4cae-ab05-e03b5aa8cf6b e6f856bf-0694-4c21-aecc-0d8dd54761f1 04ecaf38-0232-4dcd-9242-308a22cc1331 a047a512-409f-4293-9585-9933f1503f9d 61 3/27/2014 3/27/2014 3/27/2014 Live pitt 8/11/14 12:50 PM 8/11/14 1:10 PM 1 Finished 9.88 ov/TCGA-61-1733/TCGA-61-1733-01/RNA_Seq/CGHub_Illumina/710e992a-a774-4cae-ab05-e03b5aa8cf6b
TCGA TCGA-61-2012-01A-01R-1568-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina GRCh37-lite TCGA-61-2012-01A-01R-1568-13_GRCh37-lite_rnaseq.bam 8893579689 300a7ed0e5f6b0b97fab459cb52fe381 bafd8fee-e348-43a1-947d-a7ab099eb14e 929c2bc4-4cee-4f82-b336-918fe041a588 20c6be4d-7baf-4ea0-93e2-a5212f2e9b9c 0befd656-457c-4fa2-81c0-6c5a56f70196 61 12/11/2012 12/11/2012 5/16/2013 Live pitt 8/11/14 1:07 PM 8/11/14 1:23 PM 1 Finished 9.24 ov/TCGA-61-2012/TCGA-61-2012-01/RNA_Seq/CGHub_Illumina/bafd8fee-e348-43a1-947d-a7ab099eb14e
TCGA TCGA-61-2012-01A-01R-1568-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC BCCAGSC ILLUMINA Illumina NCBI36_BCCAGSC_variant TCGA-61-2012-01A-01R-1568-13_rnaseq.bam 8897024814 5d249bc413462e4d203e5cad7fbad37f f78e700e-ad69-45a4-bab8-ab55b6daef37 929c2bc4-4cee-4f82-b336-918fe041a588 20c6be4d-7baf-4ea0-93e2-a5212f2e9b9c 0befd656-457c-4fa2-81c0-6c5a56f70196 61 6/22/2012 6/22/2012 5/16/2013 Live pitt 8/11/14 12:50 PM 8/11/14 1:07 PM 1 Finished 9.13 ov/TCGA-61-2012/TCGA-61-2012-01/RNA_Seq/CGHub_Illumina/f78e700e-ad69-45a4-bab8-ab55b6daef37
TCGA TCGA-29-1770-02A-01R-1567-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TR Recurrent Solid Tumor RNA RNA-Seq BCCAGSC ILLUMINA Illumina NCBI36_BCCAGSC_variant TCGA-29-1770-02A-01R-1567-13_rnaseq.bam 17707416191 bbd436217e040b7b362aca341cb6afc3 0367df2d-bf6d-4fc4-8aae-6e252bdd1015 ea119111-5217-4b8a-88e0-36dc77782241 5abb6d80-fc39-49a4-8db5-3db24543feb6 a22ee89e-b248-496c-bd1c-90d09d4433e1 29 6/23/2012 6/23/2012 5/16/2013 Live 10/10/14 07:59 PM 10/10/14 08:02 PM 1 Finished 39.00 ov/TCGA-29-1770/TCGA-29-1770-02/RNA-Seq/CGHub_Illumina/0367df2d-bf6d-4fc4-8aae-6e252bdd1015
TCGA TCGA-57-1583-01A-01R-1566-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC ILLUMINA Illumina GRCh37-lite TCGA-57-1583-01A-01R-1566-13_GRCh37-lite_rnaseq.bam 12782569529 7d0fa0f84ccd1b4be5011c195331235a 03df64fb-f75c-405a-aa8d-81f51ee0a0fc 3a37e320-0301-4f2b-bf09-f102c12502b1 76cc2d21-eebc-4f09-9bc7-dbf7af0aafa8 04b379ac-220b-4582-84c8-be370d5ad619 57 12/12/2012 12/12/2012 5/16/2013 Live 10/10/14 08:06 PM 10/10/14 08:10 PM 1 Finished 36.00 ov/TCGA-57-1583/TCGA-57-1583-01/RNA-Seq/CGHub_Illumina/03df64fb-f75c-405a-aa8d-81f51ee0a0fc
TCGA TCGA-61-2008-01A-02R-1568-13 OV OVARIAN SEROUS CYSTADENOCARCINOMA TP Primary solid Tumor RNA RNA-Seq BCCAGSC ILLUMINA Illumina unaligned TCGA-61-2008-01A-02R-1568-13_rnaseq_fastq.tar 10377472000 58582a97b0a1e0fe3747d23fe3a56bc4 44834428-dad5-4fb9-9bbf-7913daa9e333 10271f7f-cce6-44fd-8754-7a4beabfb394 3ac45a71-c463-4f0f-b030-58c475a34418 69d76e7a-e0cb-4a8d-b6cd-67d8702d2af9 61 3/28/2014 3/28/2014 3/28/2014 suppressed suppressed 0