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getData method of tools.r fails when the VCF has only a single record #3

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archmageirvine opened this issue Mar 18, 2021 · 0 comments
Open

getData method of tools.r fails when the VCF has only a single record #3

archmageirvine opened this issue Mar 18, 2021 · 0 comments

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@archmageirvine
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For an input VCF containing a single variant and multiple samples, the getData method in tools.r fails with the error message below. I encounter this problem when trying to carry out step5 of the pipeline_1000G_AIMs_noAMR.r script applied to a reduced set of variants.

Error in rownames<-(x, value) : attempt to set 'rownames' on an object with no dimensions Calls: getData -> row.names<- -> row.names<-.default -> rownames<- Execution halted

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@archmageirvine